def test_neo_rawio_sources():
#~ from neo.rawio.tdtrawio import TdtRawIO
#~ local_tdt_folder = get_tdt_test_files()
#~ neorawio = TdtRawIO(dirname=local_tdt_folder)
#~ neorawio.parse_header()
#~ print(neorawio)
from neo.rawio.blackrockrawio import BlackrockRawIO
filename = get_blackrock_files()
neorawio = BlackrockRawIO(filename=filename)
neorawio.parse_header()
print(neorawio)
sources = ephyviewer.get_sources_from_neo_rawio(neorawio)
#~ print(sources)
for s in sources['signal']:
print(s.t_start, s.nb_channel, s.sample_rate)
print(s.get_chunk(i_start=0, i_stop=1024).shape)
for s in sources['epoch']:
print(s.t_start, s.nb_channel)
#~ print(s.get_chunk(i_start=0, i_stop=1024).shape)
print(s.get_chunk_by_time(chan=0, t_start=None, t_stop=None))
for s in sources['spike']:
print(s.t_start, s.nb_channel)
print(s.get_chunk_by_time(chan=0, t_start=None, t_stop=None))
def test_neoviewer():
#TODO make autorun neo tdtrawio test before
from neo.rawio.tdtrawio import TdtRawIO
dirname = '/tmp/files_for_testing_neo/tdt/aep_05/'
neorawio = TdtRawIO(dirname=dirname)
neorawio.parse_header()
print(neorawio)
sources = ephyviewer.get_sources_from_neo_rawio(neorawio)
app = ephyviewer.mkQApp()
win = ephyviewer.MainViewer(debug=True, show_auto_scale=True)
for i, sig_source in enumerate(sources['signal']):
view = ephyviewer.TraceViewer(source=sig_source, name='signal {}'.format(i))
win.add_view(view)
for i, ep_source in enumerate(sources['epoch']):
view = ephyviewer.EpochViewer(source=ep_source, name='epochs')
win.add_view(view)
win.show()
app.exec_()
def test_neoviewer(interactive=False):
#~ from neo.rawio.tdtrawio import TdtRawIO
#~ local_tdt_folder = get_tdt_test_files()
#~ neorawio = TdtRawIO(dirname=local_tdt_folder)
#~ neorawio.parse_header()
#~ print(neorawio)
from neo.rawio.blackrockrawio import BlackrockRawIO
filename = get_blackrock_files()
neorawio = BlackrockRawIO(filename=filename)
neorawio.parse_header()
print(neorawio)
sources = ephyviewer.get_sources_from_neo_rawio(neorawio)
print(sources)
app = ephyviewer.mkQApp()
win = ephyviewer.MainViewer(debug=True, show_auto_scale=True)
for i, sig_source in enumerate(sources['signal']):
view = ephyviewer.TraceViewer(source=sig_source,
name='signal {}'.format(i))
win.add_view(view)
for i, ep_source in enumerate(sources['epoch']):
view = ephyviewer.EpochViewer(source=ep_source, name='epochs')
win.add_view(view)
if interactive:
win.show()
app.exec_()
else:
# close thread properly
win.close()
def open_ephyviewer(self):
if self.win_viewer is not None:
self.win_viewer.close()
self.win_viewer = None
if self.dataio is None:
return
if not hasattr(self.dataio.datasource, 'rawios'):
return
sources = ephyviewer.get_sources_from_neo_rawio(
self.dataio.datasource.rawios[0])
self.win_viewer = ephyviewer.MainViewer()
for i, sig_source in enumerate(sources['signal']):
view = ephyviewer.TraceViewer(source=sig_source,
name='signal {}'.format(i))
view.params['scale_mode'] = 'same_for_all'
view.params['display_labels'] = True
view.auto_scale()
if i == 0:
self.win_viewer.add_view(view)
else:
self.win_viewer.add_view(view,
tabify_with='signal {}'.format(i - 1))
self.win_viewer.show()
def test_neoviewer(interactive=False):
from neo.rawio.tdtrawio import TdtRawIO
local_test_dir = get_tdt_test_files()
dirname = os.path.join(local_test_dir, 'aep_05')
neorawio = TdtRawIO(dirname=dirname)
neorawio.parse_header()
print(neorawio)
sources = ephyviewer.get_sources_from_neo_rawio(neorawio)
app = ephyviewer.mkQApp()
win = ephyviewer.MainViewer(debug=True, show_auto_scale=True)
for i, sig_source in enumerate(sources['signal']):
view = ephyviewer.TraceViewer(source=sig_source,
name='signal {}'.format(i))
win.add_view(view)
for i, ep_source in enumerate(sources['epoch']):
view = ephyviewer.EpochViewer(source=ep_source, name='epochs')
win.add_view(view)
if interactive:
win.show()
app.exec_()
else:
# close thread properly
win.close()
def test_neo_rawio_sources():
from neo.rawio.tdtrawio import TdtRawIO
local_test_dir = get_tdt_test_files()
dirname = os.path.join(local_test_dir, 'aep_05')
neorawio = TdtRawIO(dirname=dirname)
neorawio.parse_header()
print(neorawio)
sources = ephyviewer.get_sources_from_neo_rawio(neorawio)
#~ print(sources)
for s in sources['signal']:
print(s.t_start, s.nb_channel, s.sample_rate)
print(s.get_chunk(i_start=0, i_stop=1024).shape)
for s in sources['epoch']:
print(s.t_start, s.nb_channel)
#~ print(s.get_chunk(i_start=0, i_stop=1024).shape)
print(s.get_chunk_by_time(chan=0, t_start=None, t_stop=None))
for s in sources['spike']:
print(s.t_start, s.nb_channel)
print(s.get_chunk_by_time(chan=0, t_start=None, t_stop=None))
def test_neo_rawio_sources():
#TODO make autorun neo tdtrawio test before
from neo.rawio.tdtrawio import TdtRawIO
dirname = '/tmp/files_for_testing_neo/tdt/aep_05/'
neorawio = TdtRawIO(dirname=dirname)
neorawio.parse_header()
print(neorawio)
sources = ephyviewer.get_sources_from_neo_rawio(neorawio)
#~ print(sources)
for s in sources['signal']:
print(s.t_start, s.nb_channel, s.sample_rate)
print(s.get_chunk(i_start=0, i_stop=1024).shape)
for s in sources['epoch']:
print(s.t_start, s.nb_channel)
#~ print(s.get_chunk(i_start=0, i_stop=1024).shape)
print(s.get_chunk_by_time(chan=0, t_start=None, t_stop=None))
for s in sources['spike']:
print(s.t_start, s.nb_channel)
print(s.get_chunk_by_time(chan=0, t_start=None, t_stop=None))