def run(self):
if self._settings is None:
self.callback(None, np.nan,
FocusError("Settings not initialised!"))
return
if self._checkid is None:
lockid = self._md.lock()
if lockid is None:
self.callback(None, np.nan,
MotionError("Unable to lock the movement"))
return
else:
lockid = self._checkid
try:
data, z_best, error = self._zcorrector.focus(
self._settings,
checkid=lockid,
change_coordinates=self._change_coordinates)
self._md.unlock()
self.callback(data, z_best, error)
except (FocusError, MotionError, CameraError) as e:
logError()
self.callback(None, np.nan, e)
finally:
self._md.unlock()
self._settings = None
def run(self):
HW = None
try:
HW = self._newConnection()
except:
logError()
raise
finally:
self._callback(HW)
def set_velocity(self, V):
V = V / 1000
try:
velocity_parameters = self._kCubeDCServoMotor.GetVelocityParams()
velocity_parameters.MaxVelocity = Decimal(float(V))
self._kCubeDCServoMotor.SetVelocityParams(velocity_parameters)
except Thorlabs.MotionControl.DeviceManagerCLI.DeviceException as exc:
logError()
print("Can't set velocity {}".format(V))
def get_image(self, Ntries=3):
try:
im = self.cam.grab()
except PxLerror:
logError()
if Ntries <= 0:
raise HardwareError(f"Failed to grab")
print(f"Grab fail, retrying")
self.restart_streaming()
return self.get_image(Ntries - 1)
if self.flip_image:
im = im[::-1, ::-1]
return im
def run(self):
try:
self._parser.parse(self._filename)
except FileNotFoundError:
print("Can't open", self._filename)
self.error.emit(f"Can't find {self._filename}")
except (ScriptError, ParseError) as e:
logError()
self.error.emit(f"Error: {e}")
except BaseException as e:
print("Parse failed")
print(e)
raise
def try_connect(fconnect, Error, max_tests=20):
connected = False
Ntests = 0
while not connected and Ntests < max_tests:
try:
fconnect()
connected = True
except Error:
logError()
time.sleep(1)
Ntests += 1
if Ntests == max_tests:
raise
def restart_streaming(self, Ntries=10):
try:
next_state = False
self.cam.streaming = False
next_state = True
self.cam.streaming = True
except PxLerror:
logError()
if Ntries <= 0:
raise HardwareError(
f"Failed to restart streaming ({next_state})")
print(f"Restart fail, retrying ({next_state})")
warnings.warn(
RuntimeWarning(f"Can't restart Camera ({next_state})"))
self.nuclear_option()
self.restart_streaming(Ntries - 1)
def show_frame(self, frame=None):
try:
if frame is None:
frame = self.get_frame()
extent = (0, frame.shape[1] * self._pixelSize,
frame.shape[0] * self._pixelSize, 0)
self.update_image(frame,
vmin=self._vmin,
vmax=self._vmax,
extent=extent)
except self._parent.camera_delegate.error:
logError()
pass
except BaseException as e:
print("Can't show frame", e)
def MOVVEL(self, X, V):
if V[0] < 1e-3:
return
elif V[0] < 5:
V[0] = 5
print("Speed too small")
# Reverse z
Z = -X[0]
self.set_velocity(V[0])
try:
self._move_to(Z)
except MoveToInvalidPositionException:
logError()
raise MotionError(f"{Z} is out of range!")
except MoveTimeoutException:
logError()
raise MotionError(f"The motion was too slow with speed {V}")
def focus(piezo):
if piezo:
stage = application_delegate.movement_delegate.piezo
else:
stage = application_delegate.movement_delegate.motor
try:
self.fd.focus(start_offset=float(back_input.text()),
stop_offset=float(forth_input.text()),
step=float(step_input.text()),
stage=stage,
intensity=float(intensity_input.text()),
Nloops=int(float(Nloops_input.text())),
speed=float(speed_input.text()),
quick=quick_input.isChecked())
except FocusError as e:
logError()
print(e)
application_delegate.error.emit(f"Focus Error: {e}")
def run(self):
try:
start, stop, step = self._range
positions = []
for i, corner in enumerate(self._pos):
corner[2] = start
self._stage.goto_position(corner,
speed=1000,
wait=True,
checkid=self.checkid)
self._fd.focus(start_offset=0,
stop_offset=(stop - start),
step=step,
stage=self._stage,
wait=True,
checkid=self.checkid,
change_coordinates=False,
quick=False,
speed=1000)
data, z_best, error = self._fd.get_result()
if error is None:
positions.append(self._stage.get_position(raw=True))
if len(positions) < 3:
raise FocusError('Need at least 3 successful focus.')
corrections = self._stage.corrections
offset, rotation_angles = solve_z(
positions,
offset=corrections["offset"],
rotation_angles=corrections["rotation angles"])
corrections["offset"] = offset
corrections["rotation angles"] = rotation_angles
self._stage.corrections = corrections
except (FocusError, MotionError) as e:
logError()
self.error = e
self.error_signal.emit(f"Plane Error {e}")
def parse_line(self, fun, args):
try:
fun(*args)
except BaseException as e:
logError()
self.handle_error(e)