def api(initialize_databases):
session = ERT_STORAGE.Session()
api = RdbApi(session=session)
try:
yield api
finally:
session.rollback()
session.close()
def db_api(populated_database):
db_lookup = populated_database
session = ERT_STORAGE.Session()
api = RdbApi(session=session)
try:
yield api, db_lookup
finally:
session.rollback()
session.close()
def session(self):
"""Provide a transactional scope around a series of operations."""
session = ERT_STORAGE.Session()
try:
yield StorageApi(session)
session.commit()
except:
session.rollback()
raise
finally:
session.close()
def storage_api(db_api):
api, db_lookup = db_api
yield StorageApi(session=ERT_STORAGE.Session()), db_lookup
def populated_database(initialize_databases):
session = ERT_STORAGE.Session()
api = RdbApi(session=session)
db_lookup = {}
prior_key1 = api.add_prior("group", "key1", "function",
["paramA", "paramB"], [0.1, 0.2])
prior_key2 = api.add_prior("group", "key2", "function",
["paramA", "paramB"], [0.3, 0.4])
prior_key3 = api.add_prior("group", "key3", "function",
["paramA", "paramB"], [0.5, 0.6])
prior_a = api.add_prior("G", "A", "function", ["paramA", "paramB"],
[0.5, 0.6])
######## add ensemble ########
ensemble = api.add_ensemble(name="ensemble_name",
priors=[prior_key1, prior_key2, prior_key3])
db_lookup["ensemble"] = ensemble.id
db_lookup["ensemble_timestamp"] = ensemble.time_created
######## add parameteredefinitionss ########
parameter_def_A_G = api.add_parameter_definition("A",
"G",
"ensemble_name",
prior=prior_a)
parameter_def_B_G = api.add_parameter_definition("B", "G", "ensemble_name")
parameter_def_key1_group = api.add_parameter_definition("key1",
"group",
"ensemble_name",
prior=prior_key1)
db_lookup["parameter_def_A_G"] = parameter_def_A_G.id
db_lookup["parameter_def_key1_group"] = parameter_def_key1_group.id
######## add observations ########
observation_one = api.add_observation(
name="observation_one",
key_indices=[0, 3],
data_indices=[2, 3],
values=[10.1, 10.2],
errors=[1, 3],
)
observation_one.add_attribute("region", "1")
observation_two_first = api.add_observation(
name="observation_two_first",
key_indices=["2000-01-01 20:01:01"],
data_indices=[4],
values=[10.3],
errors=[2],
)
observation_two_second = api.add_observation(
name="observation_two_second",
key_indices=["2000-01-02 20:01:01"],
data_indices=[5],
values=[10.4],
errors=[2.5],
)
######## add response definitions ########
response_definition_one = api.add_response_definition(
name="response_one",
indices=[3, 5, 8, 9],
ensemble_name=ensemble.name,
)
response_definition_two = api.add_response_definition(
name="response_two",
indices=[
"2000-01-01 20:01:01",
"2000-01-02 20:01:01",
"2000-01-02 20:01:01",
"2000-01-02 20:01:01",
"2000-01-02 20:01:01",
"2000-01-02 20:01:01",
],
ensemble_name=ensemble.name,
)
db_lookup["response_definition_one"] = response_definition_one.id
######## observation response definition links ########
obs_res_def_link = api._add_observation_response_definition_link(
observation_id=observation_one.id,
response_definition_id=response_definition_one.id,
active=[True, False],
update_id=None,
)
api._add_observation_response_definition_link(
observation_id=observation_two_first.id,
response_definition_id=response_definition_two.id,
active=[True],
update_id=None,
)
api._add_observation_response_definition_link(
observation_id=observation_two_second.id,
response_definition_id=response_definition_two.id,
active=[True],
update_id=None,
)
######## add realizations ########
realization_0 = api.add_realization(0, ensemble.name)
realization_1 = api.add_realization(1, ensemble.name)
db_lookup["realization_0"] = realization_0.id
def add_data(realization, ens):
response_one = api.add_response(
name="response_one",
values=[11.1, 11.2, 9.9, 9.3],
realization_index=realization.index,
ensemble_name=ens.name,
)
api._add_misfit(200, obs_res_def_link.id, response_one.id)
api.add_response(
name="response_two",
values=[12.1, 12.2, 11.1, 11.2, 9.9, 9.3],
realization_index=realization.index,
ensemble_name=ens.name,
)
api.add_parameter("A", "G", 1, realization.index, "ensemble_name")
api.add_parameter("B", "G", 2, realization.index, "ensemble_name")
api.add_parameter("key1", "group", 2, realization.index,
"ensemble_name")
add_data(realization_0, ens=ensemble)
add_data(realization_1, ens=ensemble)
session.commit()
session.close()
yield db_lookup