def testOthersByDir(fileName, algorithmName, flag=1):
precisions = []
recalls = []
accuracys = []
allPredictLabels = []
allRealLabels = []
model = None
for i in range(5):
normTrainingMat, normTestMat, hmLabels, \
chmLabels, minVals, maxVals = loadFileData(fileName, i)
if algorithmName == 'SVM':
model = ar.testSVM(flag)
elif algorithmName == 'RF':
model = ar.testRandomForest()
elif algorithmName == 'Bayes':
model = ar.testBayes(flag)
elif algorithmName == 'Tree':
model = ar.testDecisionTree()
else:
pass
if model is None:
raise NameError('algorithm input error')
model.fit(normTrainingMat, hmLabels)
predictLabels = model.predict(normTestMat)
precision, recall, accuracy = evaluate.evaluateClassifier(
predictLabels, chmLabels)
allPredictLabels.extend(predictLabels)
allRealLabels.extend(chmLabels)
precisions.append(precision)
recalls.append(recall)
accuracys.append(accuracy)
avgPrecision, avgRecall, avgAccuracy = evaluate.output(
precisions, recalls, accuracys)
return \
avgPrecision, avgRecall, avgAccuracy, allPredictLabels, allRealLabels
def testKNNByFile(fileName, algorithmName, kValue=5):
dataMat, labels, features = file2matrix(fileName)
precisions = []
recalls = []
accuracys = []
allPredictLabels = []
allRealLabels = []
classifierResult = None
for j in range(10):
normTrainingMat, normTestMat, hmLabels, chmLabels = crossAuth(
dataMat, labels, j)
minVals = normTrainingMat.min(0)
maxVals = normTrainingMat.max(0)
normTrainingMat = autoNorm(minVals, maxVals, normTrainingMat)
normTestMat = autoNorm(minVals, maxVals, normTestMat)
errorCount = 0.0
m = len(normTestMat)
predictLabels = []
for i in range(m):
if algorithmName == 'KNN':
classifierResult = ar.kNNClassify(normTestMat[i, :],
normTrainingMat, hmLabels,
kValue)
elif algorithmName == 'IPDC_KNN':
classifierResult = ar.IPDCKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
elif algorithmName == 'IPDS_KNN':
classifierResult = ar.IPDSKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
elif algorithmName == 'IPDCS_KNN':
classifierResult = ar.IPDCSKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
elif algorithmName == 'IPNC_KNN':
classifierResult = ar.IPNCKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
else:
pass
if classifierResult is None:
raise NameError('algorithm input error')
if (classifierResult != chmLabels[i]):
errorCount += 1.0
predictLabels.append(classifierResult)
precision, recall, accuracy = evaluate.evaluateClassifier(
predictLabels, chmLabels)
allPredictLabels.extend(predictLabels)
allRealLabels.extend(chmLabels)
precisions.append(precision)
recalls.append(recall)
accuracys.append(accuracy)
avgPrecision, avgRecall, avgAccuracy = evaluate.output(
precisions, recalls, accuracys)
return \
avgPrecision, avgRecall, avgAccuracy, allPredictLabels, allRealLabels
def testKNNByDir(fileName, algorithmName, kValue=5):
precisions = []
recalls = []
accuracys = []
allPredictLabels = []
allRealLabels = []
classifierResult = None
for j in range(5):
normTrainingMat, normTestMat, hmLabels, \
chmLabels, minVals, maxVals = loadFileData(fileName, j)
errorCount = 0.0
m = len(normTestMat)
predictLabels = []
for i in range(m):
if algorithmName == 'KNN':
classifierResult = ar.kNNClassify(normTestMat[i, :],
normTrainingMat, hmLabels,
kValue)
elif algorithmName == 'IPDC_KNN':
classifierResult = ar.IPDCKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
elif algorithmName == 'IPDS_KNN':
classifierResult = ar.IPDSKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
elif algorithmName == 'IPDCS_KNN':
classifierResult = ar.IPDCSKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
elif algorithmName == 'IPNC_KNN':
classifierResult = ar.IPNCKNNClassify(normTestMat[i, :],
normTrainingMat,
hmLabels, kValue)
else:
pass
if classifierResult is None:
raise NameError('algorithm input error')
if (classifierResult != chmLabels[i]):
errorCount += 1.0
predictLabels.append(classifierResult)
precision, recall, accuracy = evaluate.evaluateClassifier(
predictLabels, chmLabels)
allPredictLabels.extend(predictLabels)
allRealLabels.extend(chmLabels)
precisions.append(precision)
recalls.append(recall)
accuracys.append(accuracy)
avgPrecision, avgRecall, avgAccuracy = evaluate.output(
precisions, recalls, accuracys)
return \
avgPrecision, avgRecall, avgAccuracy, allPredictLabels, allRealLabels
def cotraining (model_one, model_two, n_iter = 100) :
"""
"""
data, train_number, val_number, test_number, unlabel_number, label, uid = datahandler.clean_data ()
train = data[:train_number,:]
validation = data[train_number:train_number+val_number:,:]
test = data[train_number+val_number:-unlabel_number,:]
unlabel = data[-unlabel_number:,:]
train, validation, test, unlabel = decomposition.gbdt_dimreduce_threshold (train, label, validation, test, unlabel)
# train, validation, test, unlabel = split.split_continuum_value_tvt (train, validation, test, unlabel)
# train_number = 100
# unlabel_number = 1000
#
# train = train[:100,:]
# unlabel = unlabel[:1000,:]
# label = label[:100]
train_one = copy.deepcopy (train)
label_one = copy.deepcopy (label)
train_two = copy.deepcopy (train)
label_two = copy.deepcopy (label)
model_one.fit (train_one, label_one)
model_two.fit (train_two, label_two)
for iter in xrange (1 , n_iter + 1 , 1) :
logging.info ('#%d iter for co-training :' % iter)
unlabel_label = [-1] * unlabel_number
unlabel_index = range (0, unlabel_number)
step = 0
while len (unlabel_index) > 0 :
step += 1
logging.info ('co-training step #%d , reamining unlabel: %d' % (step, len (unlabel_index)))
model_one, model_two, unlabel_label, unlabel_index, train_two, label_two = training (model_one, model_two, unlabel, unlabel_label, unlabel_index, train_two, label_two)
model_two, model_one, unlabel_label, unlabel_index, train_one, label_one = training (model_two, model_one, unlabel, unlabel_label, unlabel_index, train_one, label_one)
evaluate.get_auc (model_one.predict_proba (validation)[:,1])
evaluate.get_auc (model_two.predict_proba (validation)[:,1])
evaluate.get_auc ((model_one.predict_proba (validation)[:,1] + model_two.predict_proba (validation)[:,1]) / 2.0)
joblib.dump (model_one, ROOT + '/result/model/model_one_%d_%d.pkl' % (iter, step))
joblib.dump (model_two, ROOT + '/result/model/model_two_%d_%d.pkl' % (iter, step))
evaluate.output (uid, (model_one.predict_proba (test)[:,1] + model_two.predict_proba (test)[:,1]) / 2.0, ROOT + '/result/predict/cotraining_%d_%d.csv' % (iter, step))
evaluate.output (uid, model_one.predict_proba (test)[:,1], ROOT + '/result/predict/model_one_%d_%d.csv' % (iter, step))
evaluate.output (uid, model_two.predict_proba (test)[:,1], ROOT + '/result/predict/model_two_%d_%d.csv' % (iter, step))
# train_data = train_data[:100,:]
# validation = validation[:100,:]
# test = test[:100,:]
# train_label = train_label[:100]
train_data, validation, test, unlabel = feature_extract(train_data, train_label, validation, test, unlabel)
# print new_train_data.shape
train_data, validation, test, unlabel = feature_handler(train_data, validation, test, unlabel)
rf = RandomForestClassifier(warm_start=True, n_jobs=2, n_estimators=2000, max_depth=3, min_samples_split=50)
rf.fit(train_data, train_label)
# joblib.dump (rf, ROOT + '/result/rf.pkl')
evaluate.get_auc(rf.predict_proba(validation)[:, 1])
return rf.predict_proba(train_data)[:, 1]
if __name__ == "__main__":
data, train_number, val_number, test_number, unlabel_number, label, uid = datahandler.clean_data()
assert data.shape[0] == train_number + test_number + val_number + unlabel_number
predict = rf_solver(
data[:train_number, :],
label,
data[train_number : train_number + val_number, :],
data[train_number + val_number : -unlabel_number, :],
data[-unlabel_number:, :],
decomposition.gbdt_dimreduce_threshold,
split.undo,
)
evaluate.output(uid, predict, ROOT + "/result/rf.csv")
sys.path.insert (0, '../..')
from configure import *
def knn_solver(train_data, train_label, validation, test, dimreduce, convertbinary):
"""
"""
logging.info('begin to train the knn classifier')
# train_data = train_data[:100,:]
# validation = validation[:100,:]
# test = test[:100,:]
# train_label = train_label[:100]
train_data, validation, test = dimreduce(train_data, train_label, validation, test)
# print new_train_data.shape
# train_data, validation, test = convertbinary(train_data, validation, test)
knn = KNeighborsClassifier (algorithm = 'auto', n_neighbors = 10, p = 3)
knn.fit (train_data , train_label)
tools.get_auc (knn.predict_proba (validation)[:,1])
return knn.predict_proba (test)[:,1]
if __name__ == "__main__" :
data, train_number, val_number, test_number, label, uid = datahandler.clean_data ()
assert data.shape[0] == train_number + test_number + val_number
predict = knn_solver (data[:train_number,:], label, data[train_number:-test_number,:], data[-test_number:,:], decomposition.gbdt_dimreduce_threshold, split.split_continuum_value_tvt)
evaluate.output (uid, predict, ROOT + '/result/knn.csv')
"""
This evaluates how a differing symmetric window size affects the evaluation results.
"""
from config import base
import evaluate as e
config = base.get_config()
config['test_filepath'] = 'resources/test/teddev/data-with-doc.csv'
window_sizes = [(0, 0), (1, 1), (2, 2), (3, 3), (4, 4), (5, 5), (6, 6), (7, 7), (8, 8), (9, 9), (10, 10)]
for window_size in window_sizes:
print("Running {}".format(window_size))
config['window_size'] = window_size
config['no_embeddings'] = 2 * (window_size[0] + window_size[1]) + 1 + config['n_tags'] * 2
predictions = e.evaluate(config)
test_data = e.load_data(config['test_filepath'])
e.output(predictions, test_data, config['classes'],
'results/base.dev.window_size.{}+{}.txt'.format(window_size[0], window_size[1]))
print("Saving {}".format(window_size))
"""
This evaluates how the number of preceding POS tags affects the evaluation results.
"""
from config import base
import evaluate as e
config = base.get_config()
config['test_filepath'] = 'resources/test/teddev/data-with-doc.csv'
ignores = ['ignore_pos_tags', 'ignore_target_context', 'ignore_source_context']
n_embeddings = {'ignore_pos_tags': config['n_tags'] * 2,
'ignore_target_context': config['window_size'][0] + config['window_size'][1],
'ignore_source_context': config['window_size'][0] + config['window_size'][1] + 1}
for ignore in ignores:
print("Running {}".format(ignore))
config[ignore] = True
config['no_embeddings'] = sum(n_embeddings[feature] for feature in n_embeddings if not config.get(feature, False))
print("no_embeddings: {}".format(config['no_embeddings']))
print(config)
predictions = e.evaluate(config)
test_data = e.load_data(config['test_filepath'])
e.output(predictions, test_data, config['classes'],
'results/base.dev.ignore.{}.txt'.format(ignore))
print("Saving {}".format(ignore))
config[ignore] = False
"""
This evaluates how the number of preceding POS tags affects the evaluation results.
"""
from config import base
import evaluate as e
config = base.get_config()
config['test_filepath'] = 'resources/test/teddev/data-with-doc.csv'
n_tags = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
for n_tag in n_tags:
print("Running {}".format(n_tag))
config['n_tags'] = n_tag
config['no_embeddings'] = 2 * (config['window_size'][0] + config['window_size'][1]) + 1 + n_tag * 2
predictions = e.evaluate(config)
test_data = e.load_data(config['test_filepath'])
e.output(predictions, test_data, config['classes'],
'results/base.dev.n_tags.{}.txt'.format(n_tag))
print("Saving {}".format(n_tag))
from configure import *
def nb_solver(train_data, train_label, validation, test, classifier, dimreduce, convertbinary):
"""
"""
logging.info('begin to train the naive bayes classifier')
# train_data = train_data[:100,:]
# validation = validation[:100,:]
# test = test[:100,:]
# train_label = train_label[:100]
train_data, validation, test = dimreduce(train_data, train_label, validation, test)
# print new_train_data.shape
train_data, validation, test = convertbinary(train_data, validation, test)
nb = classifier ()
nb.fit(train_data , train_label)
evaluate.get_auc (nb.predict_proba (validation)[:,1])
return nb.predict_proba (test)[:,1]
if __name__ == "__main__" :
data, train_number, val_number, test_number, label, uid = datahandler.clean_data ()
assert data.shape[0] == train_number + test_number + val_number
predict = nb_solver (data[:train_number,:], label, data[train_number:-test_number,:], data[-test_number:,:], BernoulliNB, decomposition.undo, split.undo)
evaluate.output (uid, predict, ROOT + '/result/naivebayes.csv')
"""
This runs the final configuration as reported in the paper.
"""
from config import base
import evaluate as e
config = base.get_config()
output_path = 'results/final.output.txt'
print("Running configuration: {}".format(config))
predictions = e.evaluate(config)
test_data = e.load_data(config['test_filepath'])
e.output(predictions, test_data, config['classes'],
output_path)
print("Saved output to {}".format(output_path))