def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`barcode`.
if not self.barcode is None:
slug = slug_from_string(self.barcode)
else:
slug = None
return slug
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`barcode`.
if not self.barcode is None:
slug = slug_from_string(self.barcode)
else:
slug = None
return slug
def test_init(self, request, iso_fac_name):
iso_fac = request.getfuncargvalue(iso_fac_name)
iso = iso_fac()
check_attributes(iso, iso_fac.init_kw)
assert len(iso.iso_stock_racks) == 0
assert len(iso.iso_sector_stock_racks) == 0
assert len(iso.iso_preparation_plates) == 0
assert len(iso.iso_aliquot_plates) == 0
if iso_fac_name == 'stock_sample_creation_iso_fac':
assert len(iso.iso_sector_preparation_plates) == 0
else:
assert len(iso.final_plates) == 0
assert iso.slug == slug_from_string(iso.label)
def test_init(self, request, iso_fac_name):
iso_fac = request.getfuncargvalue(iso_fac_name)
iso = iso_fac()
check_attributes(iso, iso_fac.init_kw)
assert len(iso.iso_stock_racks) == 0
assert len(iso.iso_sector_stock_racks) == 0
assert len(iso.iso_preparation_plates) == 0
assert len(iso.iso_aliquot_plates) == 0
if iso_fac_name == 'stock_sample_creation_iso_fac':
assert len(iso.iso_sector_preparation_plates) == 0
else:
assert len(iso.final_plates) == 0
assert iso.slug == slug_from_string(iso.label)
def test_init(self, species_fac):
spec = species_fac()
check_attributes(spec, species_fac.init_kw)
assert spec.slug == slug_from_string(spec.common_name)
def slug(self):
"""
The slug is derived from the :attr:`hash_value`.
"""
return slug_from_string(self._hash_value)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`common_name`.
return slug_from_string(self.common_name)
def test_init(self, reservoir_specs_fac):
rs = reservoir_specs_fac()
check_attributes(rs, reservoir_specs_fac.init_kw)
assert rs.slug == slug_from_string(rs.name)
def slug(self):
#: The slug for instances of this class is derived from the
#: :attr:`name`.
return slug_from_string(self.name)
def slug(self):
"""
The slug of a reservoir spec is its :class:`name`.
"""
return slug_from_string(self._name)
def test_init(self, user_fac):
user = user_fac()
check_attributes(user, user_fac.init_kw)
assert user.slug == slug_from_string(user.directory_user_id)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`common_name`.
return slug_from_string(self.common_name)
def slug(self):
#: For instance of this class the slug is composed as follows:
#: [:attr:`domain` \: :attr:`predicate` \= :attr:`value`\]
#: (without white space around the special characters).
return slug_from_string("%s:%s=%s" %
(self.domain, self.predicate, self.value))
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`username`.
return slug_from_string(self.user.username + '_' + self.app_name)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`username`.
return slug_from_string(self.directory_user_id)
def test_init(self, reservoir_specs_fac):
rs = reservoir_specs_fac()
check_attributes(rs, reservoir_specs_fac.init_kw)
assert rs.slug == slug_from_string(rs.name)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`accession`.
return slug_from_string(self.accession)
def slug(self):
"""
The slug for molecule design libraries is derived from the
:attr:`label`.
"""
return slug_from_string(self.label)
def test_basic(self):
str_input = "spaces with_underscore AND CAPS"
str_as_slug = "spaces-with-underscore-and-caps"
slug = slug_from_string(str_input)
self.assert_equal(slug, str_as_slug)
def reservoir_specs_std96():
agg = get_root_aggregate(IReservoirSpecs)
return agg.get_by_slug(slug_from_string(RESERVOIR_SPECS_NAMES.STANDARD_96))
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`username`.
return slug_from_string(self.directory_user_id)
def reservoir_specs_std96():
agg = get_root_aggregate(IReservoirSpecs)
return agg.get_by_slug(
slug_from_string(RESERVOIR_SPECS_NAMES.STANDARD_96))
def slug(self):
"""
The slug of a planned transfer is its :attr:`name`.
"""
return slug_from_string(self._name)
def test_get_slug_from_string(self):
self.assert_equal(slug_from_string('a b_C'), 'a-b-c')
def test_init(self, gene_fac):
gene = gene_fac()
assert gene.slug == slug_from_string(gene.accession)
check_attributes(gene, gene_fac.init_kw)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`hash_value`.
return slug_from_string(self._hash_value)
def test_get_slug_from_string(self):
self.assert_equal(slug_from_string('a b_C'), 'a-b-c')
def slug(self):
return slug_from_string("%s-%s" % (self.last_name, self.first_name))
def slug(self):
"""
The slug of a reservoir spec is its :class:`name`.
"""
return slug_from_string(self._name)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`hash_value`.
return slug_from_string(self._hash_value)
def slug(self):
"""
The slug of a planned transfer is its :attr:`name`.
"""
return slug_from_string(self._name)
def test_init(self, organization_fac):
org = organization_fac()
check_attributes(org, organization_fac.init_kw)
assert org.slug == slug_from_string(org.name)
def test_init(self, molecule_type_fac):
mt = molecule_type_fac()
check_attributes(mt, molecule_type_fac.init_kw)
assert mt.slug == slug_from_string(mt.name)
def slug(self):
return slug_from_string(self.name)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`label`.
return slug_from_string(self.label)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`accession`.
return slug_from_string(self.accession)
def __get_structure_type(self):
agg = get_root_aggregate(IChemicalStructureType)
return agg.get_by_slug(slug_from_string(self.structure_type_id))
def test_init(self, barcoded_location_fac):
bl = barcoded_location_fac()
check_attributes(bl, barcoded_location_fac.init_kw)
assert bl.rack is None
assert bl.slug == slug_from_string(bl.name)
def test_init(self, user_preferences_fac):
up = user_preferences_fac()
check_attributes(up, user_preferences_fac.init_kw)
assert up.slug == slug_from_string("%s_%s"
% (up.user.username, up.app_name))
def slug(self):
"""
The slug for molecule design libraries is derived from the
:attr:`label`.
"""
return slug_from_string(self.label)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`label`.
return slug_from_string(self.label)
def test_init(self, barcoded_location_fac):
bl = barcoded_location_fac()
check_attributes(bl, barcoded_location_fac.init_kw)
assert bl.rack is None
assert bl.slug == slug_from_string(bl.name)
def slug(self):
#: For instances of this class, the slug is derived from the
#: :attr:`username`.
return slug_from_string(self.user.username + '_' + self.app_name)
def slug(self):
return slug_from_string(
"%s-%s-%s-%s"
% (self.genus_name, self.species_name,
'' if self.cultivar is None else self.cultivar,
'' if self.author is None else self.author))
def slug(self):
"""
The slug is derived from the :attr:`hash_value`.
"""
return slug_from_string(self._hash_value)
def test_init(self, organization_fac):
org = organization_fac()
check_attributes(org, organization_fac.init_kw)
assert org.slug == slug_from_string(org.name)
def test_init(self, item_status_fac):
its = item_status_fac()
check_attributes(its, item_status_fac.init_kw)
assert its.slug == slug_from_string(its.name)
def slug(self):
return slug_from_string("%s-%s" %
(self.last_name, self.first_name))
def test_init(self, project_fac):
proj = project_fac()
check_attributes(proj, project_fac.init_kw)
assert proj.slug == slug_from_string(proj.label)
def test_init(self, user_preferences_fac):
up = user_preferences_fac()
check_attributes(up, user_preferences_fac.init_kw)
assert up.slug == slug_from_string("%s_%s" %
(up.user.username, up.app_name))
def test_init(self, user_fac):
user = user_fac()
check_attributes(user, user_fac.init_kw)
assert user.slug == slug_from_string(user.directory_user_id)
def test_init(self, tag_fac):
tag = tag_fac()
check_attributes(tag, tag_fac.init_kw)
assert tag.slug == \
slug_from_string("%s:%s=%s" %
(tag.domain, tag.predicate, tag.value))
