def setUp(self):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
# return user password to use when necessary in subclasses
self.user, self.user_passwd = create_user(Group.objects.all())
self.client.login(
username=self.user.username, password=self.user_passwd
)
# create experiment/experimental protocol/group
self.experiment = ObjectsFactory.create_experiment(
ObjectsFactory.create_research_project(self.user)
)
self.root_component = ObjectsFactory.create_block(self.experiment)
self.group = ObjectsFactory.create_group(
self.experiment, self.root_component
)
# create patient/subject/subject_of_group
self.patient = UtilTests().create_patient(changed_by=self.user)
subject = ObjectsFactory.create_subject(self.patient)
self.subject_of_group = \
ObjectsFactory.create_subject_of_group(self.group, subject)
def test_send_experiment_to_portal(self, mockRestApiClientClass):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
user, user_passwd = create_user(Group.objects.all())
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
ScheduleOfSending.objects.create(
experiment=experiment,
responsible=user,
status='scheduled',
send_participant_age=False,
reason_for_resending='Ein guter Grund')
send_experiment_to_portal(experiment)
api_fields = {
'nes_id', 'title', 'description', 'data_acquisition_done',
'project_url', 'ethics_committee_url', 'ethics_committee_file',
'release_notes'
}
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
self.assertTrue(
set(kwargs['params'].keys()).issubset(api_fields),
str(set(kwargs['params'].keys())) + ' not in ' + str(api_fields))
def setUp(self):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
# return user password to use when necessary in subclasses
self.user, self.user_passwd = create_user(Group.objects.all())
self.client.login(
username=self.user.username, password=self.user_passwd
)
# create experiment/experimental protocol/group
self.experiment = ObjectsFactory.create_experiment(
ObjectsFactory.create_research_project(self.user)
)
self.root_component = ObjectsFactory.create_block(self.experiment)
self.group = ObjectsFactory.create_group(
self.experiment, self.root_component
)
# create patient/subject/subject_of_group
self.patient = UtilTests().create_patient_mock(changed_by=self.user)
subject = ObjectsFactory.create_subject(self.patient)
self.subject_of_group = \
ObjectsFactory.create_subject_of_group(self.group, subject)
def test_send_experiment_to_portal(self, mockRestApiClientClass):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
user, user_passwd = create_user(Group.objects.all())
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
ScheduleOfSending.objects.create(
experiment=experiment, responsible=user, status='scheduled',
send_participant_age=False, reason_for_resending='Ein guter Grund'
)
send_experiment_to_portal(experiment)
api_fields = {
'nes_id', 'title', 'description', 'data_acquisition_done',
'project_url', 'ethics_committee_url', 'ethics_committee_file',
'release_notes'
}
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
self.assertTrue(
set(kwargs['params'].keys()).issubset(api_fields),
str(set(kwargs['params'].keys())) + ' not in ' + str(api_fields)
)
def test_Schedule_of_Sending_List_is_valid(self):
# Check if list of research projects is empty before inserting any.
response = self.client.get(reverse('research_project_list'))
self.assertEqual(response.status_code, 200)
self.assertEqual(len(response.context['research_projects']), 0)
ObjectsFactory.create_research_project()
# Check if list of research projects returns one item after inserting one.
response = self.client.get(reverse('research_project_list'))
self.assertEqual(response.status_code, 200)
self.assertEqual(len(response.context['research_projects']), 1)
can_send_to_portal = False
if settings.PORTAL_API['URL'] and settings.SHOW_SEND_TO_PORTAL_BUTTON:
can_send_to_portal = True
# Check if list of research projects returns one item after inserting one.
response = self.client.get(reverse('schedule_of_sending_list'))
self.assertEqual(response.status_code, 200)
def test_send_researcher_to_portal(self, mockRestApiClientClass):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
researcher = ObjectsFactory.create_experiment_researcher(experiment)
send_researcher_to_portal(research_project.id, researcher.researcher)
api_fields = {'id', 'first_name', 'last_name', 'email', 'citation_name'}
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
self.assertTrue(
set(kwargs['params'].keys()).issubset(api_fields),
str(set(kwargs['params'].keys())) + ' not in ' + str(api_fields)
)
def setUp(self):
exec(open('add_initial_data.py').read())
self.user = User.objects.create_user(username='******',
email='*****@*****.**',
password='******')
user_profile = self.user.user_profile
user_profile.login_enabled = True
user_profile.force_password_change = False
user_profile.save()
for group in Group.objects.all():
# for group in Group.objects.filter(name='Attendant'):
group.user_set.add(self.user)
self.client.login(username=self.user.username, password='******')
self.research_project = ObjectsFactory.create_research_project()
self.experiment = ObjectsFactory.create_experiment(
self.research_project)
def test_send_researcher_to_portal(self, mockRestApiClientClass):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
researcher = ObjectsFactory.create_experiment_researcher(experiment)
send_researcher_to_portal(research_project.id, researcher.researcher)
api_fields = {
'id', 'first_name', 'last_name', 'email', 'citation_name'
}
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
self.assertTrue(
set(kwargs['params'].keys()).issubset(api_fields),
str(set(kwargs['params'].keys())) + ' not in ' + str(api_fields))
def test_send_questionnaire_to_portal_has_correct_metadata_columns(
self, mockServerClass, mockRestApiClientClass):
# Create the groups of users and their permissions
exec(open('add_initial_data.py').read())
# Create objects necessary to send questionnaire step to portal
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
experimental_protocol = ObjectsFactory.create_block(experiment)
group = ObjectsFactory.create_group(experiment, experimental_protocol)
survey = create_survey(212121) # fake number
questionnaire_step = ObjectsFactory.create_component(
experiment, Component.QUESTIONNAIRE, kwargs={'survey': survey})
ObjectsFactory.create_component_configuration(experimental_protocol,
questionnaire_step)
tree = get_block_tree(group.experimental_protocol, 'en')
# Mock methods used in test calling methods
survey_languages = {'language': 'en', 'additional_languages': None}
mockServerClass.return_value.get_survey_properties.return_value = survey_languages
mockServerClass.return_value.export_responses.return_value = \
b'ImlkIiwic3VibWl0ZGF0ZSIsImxhc3RwYWdlIiwic3RhcnRsYW5ndWFn' \
b'ZSIsInRva2VuIiwicmVzcG9uc2libGVpZCIsImZha2VRdWVzdGlvbiIKI' \
b'jgiLCIxOTgwLTAxLTAxIDAwOjAwOjAwIiwiMiIsImVuIiwieDQ0cmRxeT' \
b'RhMGxoYjRMIiwiMiIsNSIsInRleHRvIGxvbmdvIgoK'
mockServerClass.return_value.get_language_properties.return_value = \
{'surveyls_title': 'Ein wunderbar Titel'}
mockServerClass.return_value.list_questions.return_value = [{
'id': {
'qid': 1
}
}]
# Mock get_question_properties LimeSurvey API method using
# ABCSearchEngine.QUESTION_PROPERTIES constant list with fake values
question_order = 21
group_id = 981
question_properties = dict(
zip(ABCSearchEngine.QUESTION_PROPERTIES,
[
group_id, 'Question Title', question_order,
'No available answers', 'No available answer options',
'fakeQuestion', 'N', 'No available attributes',
{'hidden', '1'}, 'N'
]))
mockServerClass.return_value.get_question_properties.return_value = \
question_properties
# mock list_groups LimeSurvey API method (fake values)
language = 'en'
mockServerClass.return_value.list_groups.return_value = [{
'randomization_group':
'',
'id': {
'gid': group_id,
'language': language
},
'group_name':
'Grupo 1',
'description':
'',
'group_order':
1,
'sid':
survey.lime_survey_id,
'gid':
group_id,
'language':
language,
'grelevance':
''
}]
send_steps_to_portal(21, tree, None, None, None, None, 'en')
# use mockRestApiClientClass to get metadata value that will be sent
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
for field in HEADER_EXPLANATION_FIELDS:
self.assertIn(field, kwargs['params']['survey_metadata'])
survey_metadata = csv.reader(
StringIO(kwargs['params']['survey_metadata']))
for row in survey_metadata:
self.assertEqual(len(row), len(HEADER_EXPLANATION_FIELDS))
def test_send_questionnaire_to_portal_has_correct_metadata_columns(
self, mockServerClass, mockRestApiClientClass):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
# create objects necessary to send questionnaire step to portal
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
experimental_protocol = ObjectsFactory.create_block(experiment)
group = ObjectsFactory.create_group(experiment, experimental_protocol)
survey = create_survey(212121) # fake number
questionnaire_step = ObjectsFactory.create_component(
experiment, Component.QUESTIONNAIRE, kwargs={'sid': survey.id})
ObjectsFactory.create_component_configuration(experimental_protocol,
questionnaire_step)
tree = get_block_tree(group.experimental_protocol, 'en')
# mock methods used in test calling methods
survey_languages = {'language': 'en', 'additional_languages': None}
mockServerClass.return_value.get_survey_properties.return_value = \
survey_languages
mockServerClass.return_value.export_responses.return_value = \
b'"id","submitdate","lastpage","startlanguage","token",' \
b'"responsibleid","fakeQuestion"\n' \
b'"8","1980-01-01 00:00:00","2","en","x44rdqy4a0lhb4L","2",' \
b'"5","texto longo"\n\n'
mockServerClass.return_value.get_language_properties.return_value = \
{'surveyls_title': 'Ein wunderbar Titel'}
mockServerClass.return_value.list_questions.return_value = [{
'id': {
'qid': 1
}
}]
# Mock get_question_properties LimeSurvey API method using
# ABCSearchEngine.QUESTION_PROPERTIES constant list with fake values
question_order = 21
group_id = 981
question_properties = dict(
zip(ABCSearchEngine.QUESTION_PROPERTIES,
[
group_id, 'Question Title', question_order,
'No available answers', 'No available answer options',
'fakeQuestion', 'N', 'No available attributes',
{'hidden', '1'}, 'N'
]))
mockServerClass.return_value.get_question_properties.return_value = \
question_properties
# mock list_groups LimeSurvey API method (fake values)
language = 'en'
mockServerClass.return_value.list_groups.return_value = \
[{'randomization_group': '',
'id': {'gid': group_id, 'language': language},
'group_name': 'Grupo 1', 'description': '', 'group_order': 1,
'sid': survey.lime_survey_id, 'gid': group_id,
'language': language, 'grelevance': ''}]
send_steps_to_portal(21, tree, None, None, None, None, 'en')
# use mockRestApiClientClass to get metadata value that will be sent
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
for field in HEADER_EXPLANATION_FIELDS:
self.assertIn(field, kwargs['params']['survey_metadata'])
survey_metadata = csv.reader(
StringIO(kwargs['params']['survey_metadata']))
for row in survey_metadata:
self.assertEqual(len(row), len(HEADER_EXPLANATION_FIELDS))
def test_send_questionnaire_to_portal_has_correct_metadata_columns(
self, mockServerClass, mockRestApiClientClass):
# create the groups of users and their permissions
exec(open('add_initial_data.py').read())
# create objects necessary to send questionnaire step to portal
research_project = ObjectsFactory.create_research_project()
experiment = ObjectsFactory.create_experiment(research_project)
experimental_protocol = ObjectsFactory.create_block(experiment)
group = ObjectsFactory.create_group(experiment, experimental_protocol)
survey = create_survey(212121) # fake number
questionnaire_step = ObjectsFactory.create_component(
experiment, Component.QUESTIONNAIRE,
kwargs={'survey': survey}
)
ObjectsFactory.create_component_configuration(
experimental_protocol, questionnaire_step
)
tree = get_block_tree(group.experimental_protocol, 'en')
# mock methods used in test calling methods
survey_languages = {'language': 'en', 'additional_languages': None}
mockServerClass.return_value.get_survey_properties.return_value = \
survey_languages
mockServerClass.return_value.export_responses.return_value = \
b'"id","submitdate","lastpage","startlanguage","token",' \
b'"responsibleid","fakeQuestion"\n' \
b'"8","1980-01-01 00:00:00","2","en","x44rdqy4a0lhb4L","2",' \
b'"5","texto longo"\n\n'
mockServerClass.return_value.get_language_properties.return_value = \
{'surveyls_title': 'Ein wunderbar Titel'}
mockServerClass.return_value.list_questions.return_value = [
{'id': {'qid': 1}}
]
# Mock get_question_properties LimeSurvey API method using
# ABCSearchEngine.QUESTION_PROPERTIES constant list with fake values
question_order = 21
group_id = 981
question_properties = dict(
zip(
ABCSearchEngine.QUESTION_PROPERTIES,
[group_id, 'Question Title', question_order,
'No available answers', 'No available answer options',
'fakeQuestion', 'N', 'No available attributes',
{'hidden', '1'}, 'N']
)
)
mockServerClass.return_value.get_question_properties.return_value = \
question_properties
# mock list_groups LimeSurvey API method (fake values)
language = 'en'
mockServerClass.return_value.list_groups.return_value = \
[{'randomization_group': '',
'id': {'gid': group_id, 'language': language},
'group_name': 'Grupo 1', 'description': '', 'group_order': 1,
'sid': survey.lime_survey_id, 'gid': group_id,
'language': language, 'grelevance': ''}]
send_steps_to_portal(21, tree, None, None, None, None, 'en')
# use mockRestApiClientClass to get metadata value that will be sent
(api_schema, action_keys), kwargs = \
mockRestApiClientClass.return_value.client.action.call_args
for field in HEADER_EXPLANATION_FIELDS:
self.assertIn(field, kwargs['params']['survey_metadata'])
survey_metadata = csv.reader(
StringIO(kwargs['params']['survey_metadata'])
)
for row in survey_metadata:
self.assertEqual(len(row), len(HEADER_EXPLANATION_FIELDS))