def read_te_fasta(self, fasta_file):
from fastaIO import FastaReader
seq_dict1 = {}
seq_dict2 = {}
ct = 1
handle = FastaReader(fasta_file)
for seq_id, seq in handle:
seq_dict1[ct] = seq_id
seq_dict2[ct] = seq
ct = ct + 1
handle.close()
return seq_dict1, seq_dict2
def read_chesis_fasta(self, fasta_file):
from fastaIO import FastaReader
seq_dict = {}
ct = 1
handle = FastaReader(fasta_file)
seq_id = ""
seq_length = 0
chr_seq = ""
for seq_id, seq in handle:
seq_length = len(seq)
chr_seq = seq
handle.close()
return seq_id, seq_length, chr_seq