Example #1
0
def get_estimator(epochs=20,
                  batch_size=4,
                  max_train_steps_per_epoch=None,
                  max_eval_steps_per_epoch=None,
                  save_dir=tempfile.mkdtemp(),
                  log_steps=20,
                  data_dir=None):
    # step 1
    csv = montgomery.load_data(root_dir=data_dir)
    pipeline = fe.Pipeline(
        train_data=csv,
        eval_data=csv.split(0.2),
        batch_size=batch_size,
        ops=[
            ReadImage(inputs="image",
                      parent_path=csv.parent_path,
                      outputs="image",
                      color_flag='gray'),
            ReadImage(inputs="mask_left",
                      parent_path=csv.parent_path,
                      outputs="mask_left",
                      color_flag='gray',
                      mode='!infer'),
            ReadImage(inputs="mask_right",
                      parent_path=csv.parent_path,
                      outputs="mask_right",
                      color_flag='gray',
                      mode='!infer'),
            CombineLeftRightMask(inputs=("mask_left", "mask_right"),
                                 outputs="mask",
                                 mode='!infer'),
            Delete(keys=["mask_left", "mask_right"], mode='!infer'),
            Resize(image_in="image", width=512, height=512),
            Resize(image_in="mask", width=512, height=512, mode='!infer'),
            Sometimes(numpy_op=HorizontalFlip(
                image_in="image", mask_in="mask", mode='train')),
            Sometimes(numpy_op=Rotate(image_in="image",
                                      mask_in="mask",
                                      limit=(-10, 10),
                                      border_mode=cv2.BORDER_CONSTANT,
                                      mode='train')),
            Minmax(inputs="image", outputs="image"),
            Minmax(inputs="mask", outputs="mask", mode='!infer'),
            Reshape(shape=(1, 512, 512), inputs="image", outputs="image"),
            Reshape(shape=(1, 512, 512),
                    inputs="mask",
                    outputs="mask",
                    mode='!infer')
        ])

    # step 2
    model = fe.build(
        model_fn=lambda: UNet(input_size=(1, 512, 512)),
        optimizer_fn=lambda x: torch.optim.Adam(params=x, lr=0.0001),
        model_name="lung_segmentation")

    network = fe.Network(ops=[
        ModelOp(inputs="image", model=model, outputs="pred_segment"),
        CrossEntropy(
            inputs=("pred_segment", "mask"), outputs="loss", form="binary"),
        UpdateOp(model=model, loss_name="loss")
    ])

    # step 3
    traces = [
        Dice(true_key="mask", pred_key="pred_segment"),
        BestModelSaver(model=model,
                       save_dir=save_dir,
                       metric='Dice',
                       save_best_mode='max')
    ]

    estimator = fe.Estimator(
        network=network,
        pipeline=pipeline,
        epochs=epochs,
        log_steps=log_steps,
        traces=traces,
        max_train_steps_per_epoch=max_train_steps_per_epoch,
        max_eval_steps_per_epoch=max_eval_steps_per_epoch)
    return estimator
Example #2
0
def get_estimator(max_len=20,
                  epochs=10,
                  batch_size=64,
                  train_steps_per_epoch=None,
                  eval_steps_per_epoch=None,
                  save_dir=tempfile.mkdtemp(),
                  pretrained_model='bert-base-uncased',
                  data_dir=None):
    # step 1 prepare data
    train_data, eval_data, data_vocab, label_vocab = mitmovie_ner.load_data(
        root_dir=data_dir)
    tokenizer = BertTokenizer.from_pretrained(pretrained_model,
                                              do_lower_case=True)
    tag2idx = char2idx(label_vocab)
    pipeline = fe.Pipeline(train_data=train_data,
                           eval_data=eval_data,
                           batch_size=batch_size,
                           ops=[
                               Tokenize(inputs="x",
                                        outputs="x",
                                        tokenize_fn=tokenizer.tokenize),
                               WordtoId(
                                   inputs="x",
                                   outputs="x",
                                   mapping=tokenizer.convert_tokens_to_ids),
                               WordtoId(inputs="y",
                                        outputs="y",
                                        mapping=tag2idx),
                               PadSequence(max_len=max_len,
                                           inputs="x",
                                           outputs="x"),
                               PadSequence(max_len=max_len,
                                           value=len(tag2idx),
                                           inputs="y",
                                           outputs="y"),
                               AttentionMask(inputs="x", outputs="x_masks")
                           ])

    # step 2. prepare model
    model = fe.build(
        model_fn=lambda: ner_model(max_len, pretrained_model, label_vocab),
        optimizer_fn=lambda: tf.optimizers.Adam(1e-5))
    network = fe.Network(ops=[
        ModelOp(model=model, inputs=["x", "x_masks"], outputs="y_pred"),
        Reshape(inputs="y", outputs="y", shape=(-1, )),
        Reshape(inputs="y_pred",
                outputs="y_pred",
                shape=(-1, len(label_vocab) + 1)),
        CrossEntropy(inputs=("y_pred", "y"), outputs="loss"),
        UpdateOp(model=model, loss_name="loss")
    ])

    traces = [
        Accuracy(true_key="y", pred_key="y_pred"),
        BestModelSaver(model=model, save_dir=save_dir)
    ]

    # step 3 prepare estimator
    estimator = fe.Estimator(network=network,
                             pipeline=pipeline,
                             epochs=epochs,
                             traces=traces,
                             train_steps_per_epoch=train_steps_per_epoch,
                             eval_steps_per_epoch=eval_steps_per_epoch)

    return estimator
Example #3
0
def get_estimator(epochs=20, batch_size=128, max_train_steps_per_epoch=None, save_dir=tempfile.mkdtemp()):
    # Dataset Creation
    (x_train, y_train), (x_eval, y_eval) = tf.keras.datasets.mnist.load_data()
    x_eval0, y_eval0 = x_eval[np.where((y_eval == 1))], np.ones(y_eval[np.where((y_eval == 1))].shape)
    x_eval1, y_eval1 = x_eval[np.where((y_eval != 1))], y_eval[np.where((y_eval != 1))]

    # Ensuring outliers comprise 50% of the dataset
    index = np.random.choice(x_eval1.shape[0], int(x_eval0.shape[0]), replace=False)
    x_eval1, y_eval1 = x_eval1[index], np.zeros(y_eval1[index].shape)

    x_train, y_train = x_train[np.where((y_train == 1))], np.zeros(y_train[np.where((y_train == 1))].shape)
    train_data = fe.dataset.NumpyDataset({"x": x_train, "y": y_train})

    x_eval, y_eval = np.concatenate([x_eval0, x_eval1]), np.concatenate([y_eval0, y_eval1])
    eval_data = fe.dataset.NumpyDataset({"x": x_eval, "y": y_eval})

    pipeline = fe.Pipeline(
        train_data=train_data,
        eval_data=eval_data,
        batch_size=batch_size,
        ops=[
            ExpandDims(inputs="x", outputs="x"),
            Normalize(inputs="x", outputs="x", mean=1.0, std=1.0, max_pixel_value=127.5),
            LambdaOp(fn=lambda x: x + np.random.normal(loc=0.0, scale=0.155, size=(28, 28, 1)).astype(np.float32),
                     inputs="x",
                     outputs="x_w_noise",
                     mode="train"),
            ChannelTranspose(inputs="x", outputs="x"),
            ChannelTranspose(inputs="x_w_noise", outputs="x_w_noise", mode="train")
        ])

    recon_model = fe.build(model_fn=reconstructor,
                           optimizer_fn=lambda x: torch.optim.RMSprop(x, lr=2e-4),
                           model_name="reconstructor")
    disc_model = fe.build(model_fn=discriminator,
                          optimizer_fn=lambda x: torch.optim.RMSprop(x, lr=1e-4),
                          model_name="discriminator")

    network = fe.Network(ops=[
        ModelOp(model=recon_model, inputs="x_w_noise", outputs="x_fake", mode="train"),
        ModelOp(model=recon_model, inputs="x", outputs="x_fake", mode="eval"),
        ModelOp(model=disc_model, inputs="x_fake", outputs="fake_score"),
        ModelOp(model=disc_model, inputs="x", outputs="true_score"),
        RLoss(inputs=("fake_score", "x_fake", "x"), outputs="rloss"),
        UpdateOp(model=recon_model, loss_name="rloss"),
        DLoss(inputs=("true_score", "fake_score"), outputs="dloss"),
        UpdateOp(model=disc_model, loss_name="dloss"),
    ])

    traces = [
        F1AUCScores(true_key="y", pred_key="fake_score", mode="eval", output_name=["auc_score", "f1_score"]),
        BestModelSaver(model=recon_model, save_dir=save_dir, metric='f1_score', save_best_mode='max'),
        BestModelSaver(model=disc_model, save_dir=save_dir, metric='f1_score', save_best_mode='max'),
    ]

    estimator = fe.Estimator(pipeline=pipeline,
                             network=network,
                             epochs=epochs,
                             traces=traces,
                             max_train_steps_per_epoch=max_train_steps_per_epoch,
                             log_steps=50)

    return estimator
def get_estimator(batch_size=8,
                  epochs=25,
                  max_train_steps_per_epoch=None,
                  max_eval_steps_per_epoch=None,
                  save_dir=tempfile.mkdtemp(),
                  data_dir=None):
    # load CUB200 dataset.
    train_data = cub200.load_data(root_dir=data_dir)
    eval_data = train_data.split(0.3)
    test_data = eval_data.split(0.5)

    # step 1, pipeline
    pipeline = fe.Pipeline(batch_size=batch_size,
                           train_data=train_data,
                           eval_data=eval_data,
                           test_data=test_data,
                           ops=[
                               ReadImage(inputs="image",
                                         outputs="image",
                                         parent_path=train_data.parent_path),
                               Normalize(inputs="image",
                                         outputs="image",
                                         mean=1.0,
                                         std=1.0,
                                         max_pixel_value=127.5),
                               ReadMat(file='annotation',
                                       keys="seg",
                                       parent_path=train_data.parent_path),
                               Delete(keys="annotation"),
                               LongestMaxSize(max_size=512,
                                              image_in="image",
                                              image_out="image",
                                              mask_in="seg",
                                              mask_out="seg"),
                               PadIfNeeded(min_height=512,
                                           min_width=512,
                                           image_in="image",
                                           image_out="image",
                                           mask_in="seg",
                                           mask_out="seg",
                                           border_mode=cv2.BORDER_CONSTANT,
                                           value=0,
                                           mask_value=0),
                               ShiftScaleRotate(
                                   image_in="image",
                                   mask_in="seg",
                                   image_out="image",
                                   mask_out="seg",
                                   mode="train",
                                   shift_limit=0.2,
                                   rotate_limit=15.0,
                                   scale_limit=0.2,
                                   border_mode=cv2.BORDER_CONSTANT,
                                   value=0,
                                   mask_value=0),
                               Sometimes(
                                   HorizontalFlip(image_in="image",
                                                  mask_in="seg",
                                                  image_out="image",
                                                  mask_out="seg",
                                                  mode="train")),
                               ChannelTranspose(inputs="image",
                                                outputs="image"),
                               Reshape(shape=(1, 512, 512),
                                       inputs="seg",
                                       outputs="seg")
                           ])

    # step 2, network
    resunet50 = fe.build(model_fn=ResUnet50,
                         model_name="resunet50",
                         optimizer_fn=lambda x: torch.optim.Adam(x, lr=1e-4))
    uncertainty = fe.build(model_fn=UncertaintyLossNet,
                           model_name="uncertainty",
                           optimizer_fn=lambda x: torch.optim.Adam(x, lr=1e-5))

    network = fe.Network(ops=[
        ModelOp(inputs='image',
                model=resunet50,
                outputs=["label_pred", "mask_pred"]),
        CrossEntropy(inputs=["label_pred", "label"],
                     outputs="cls_loss",
                     form="sparse",
                     average_loss=False),
        CrossEntropy(inputs=["mask_pred", "seg"],
                     outputs="seg_loss",
                     form="binary",
                     average_loss=False),
        ModelOp(inputs=["cls_loss", "seg_loss"],
                model=uncertainty,
                outputs="total_loss"),
        ReduceLoss(inputs="total_loss", outputs="total_loss"),
        UpdateOp(model=resunet50, loss_name="total_loss"),
        UpdateOp(model=uncertainty, loss_name="total_loss")
    ])

    # step 3, estimator
    traces = [
        Accuracy(true_key="label", pred_key="label_pred"),
        Dice(true_key="seg", pred_key='mask_pred'),
        BestModelSaver(model=resunet50,
                       save_dir=save_dir,
                       metric="total_loss",
                       save_best_mode="min"),
        LRScheduler(model=resunet50,
                    lr_fn=lambda step: cosine_decay(
                        step, cycle_length=13200, init_lr=1e-4))
    ]
    estimator = fe.Estimator(
        network=network,
        pipeline=pipeline,
        traces=traces,
        epochs=epochs,
        max_train_steps_per_epoch=max_train_steps_per_epoch,
        max_eval_steps_per_epoch=max_eval_steps_per_epoch,
        log_steps=500)

    return estimator
Example #5
0
def get_estimator(target_size=128,
                  epochs=55,
                  save_dir=tempfile.mkdtemp(),
                  max_train_steps_per_epoch=None,
                  data_dir=None):
    # assert growth parameters
    num_grow = np.log2(target_size) - 2
    assert num_grow >= 1 and num_grow % 1 == 0, "need exponential of 2 and greater than 8 as target size"
    num_phases = int(2 * num_grow + 1)
    assert epochs % num_phases == 0, "epoch must be multiple of {} for size {}".format(
        num_phases, target_size)
    num_grow, phase_length = int(num_grow), int(epochs / num_phases)
    event_epoch = [1, 1 + phase_length] + [
        phase_length * (2 * i + 1) + 1 for i in range(1, num_grow)
    ]
    event_size = [4] + [2**(i + 3) for i in range(num_grow)]
    # set up data schedules
    dataset = nih_chestxray.load_data(root_dir=data_dir)
    resize_map = {
        epoch: Resize(image_in="x", image_out="x", height=size, width=size)
        for (epoch, size) in zip(event_epoch, event_size)
    }
    resize_low_res_map1 = {
        epoch: Resize(image_in="x",
                      image_out="x_low_res",
                      height=size // 2,
                      width=size // 2)
        for (epoch, size) in zip(event_epoch, event_size)
    }
    resize_low_res_map2 = {
        epoch: Resize(image_in="x_low_res",
                      image_out="x_low_res",
                      height=size,
                      width=size)
        for (epoch, size) in zip(event_epoch, event_size)
    }
    batch_size_map = {
        epoch: 512 // size * get_num_devices() if size <= 128 else 4 *
        get_num_devices()
        for (epoch, size) in zip(event_epoch, event_size)
    }
    batch_scheduler = EpochScheduler(epoch_dict=batch_size_map)
    pipeline = fe.Pipeline(
        batch_size=batch_scheduler,
        train_data=dataset,
        drop_last=True,
        ops=[
            ReadImage(inputs="x", outputs="x", color_flag='gray'),
            EpochScheduler(epoch_dict=resize_map),
            EpochScheduler(epoch_dict=resize_low_res_map1),
            EpochScheduler(epoch_dict=resize_low_res_map2),
            Normalize(inputs=["x", "x_low_res"],
                      outputs=["x", "x_low_res"],
                      mean=1.0,
                      std=1.0,
                      max_pixel_value=127.5),
            LambdaOp(fn=lambda: np.random.normal(size=[512]).astype('float32'),
                     outputs="z")
        ])
    # now model schedule
    fade_in_alpha = tf.Variable(initial_value=1.0,
                                dtype='float32',
                                trainable=False)
    d_models = fe.build(
        model_fn=lambda: build_D(fade_in_alpha,
                                 target_resolution=int(np.log2(target_size)),
                                 num_channels=1),
        optimizer_fn=[
            lambda: Adam(0.001, beta_1=0.0, beta_2=0.99, epsilon=1e-8)
        ] * len(event_size),
        model_name=["d_{}".format(size) for size in event_size])
    g_models = fe.build(
        model_fn=lambda: build_G(fade_in_alpha,
                                 target_resolution=int(np.log2(target_size)),
                                 num_channels=1),
        optimizer_fn=[
            lambda: Adam(0.001, beta_1=0.0, beta_2=0.99, epsilon=1e-8)
        ] * len(event_size) + [None],
        model_name=["g_{}".format(size) for size in event_size] + ["G"])
    fake_img_map = {
        epoch: ModelOp(inputs="z", outputs="x_fake", model=model)
        for (epoch, model) in zip(event_epoch, g_models[:-1])
    }
    fake_score_map = {
        epoch: ModelOp(inputs="x_fake", outputs="fake_score", model=model)
        for (epoch, model) in zip(event_epoch, d_models)
    }
    real_score_map = {
        epoch: ModelOp(inputs="x_blend", outputs="real_score", model=model)
        for (epoch, model) in zip(event_epoch, d_models)
    }
    interp_score_map = {
        epoch: ModelOp(inputs="x_interp", outputs="interp_score", model=model)
        for (epoch, model) in zip(event_epoch, d_models)
    }
    g_update_map = {
        epoch: UpdateOp(loss_name="gloss", model=model)
        for (epoch, model) in zip(event_epoch, g_models[:-1])
    }
    d_update_map = {
        epoch: UpdateOp(loss_name="dloss", model=model)
        for (epoch, model) in zip(event_epoch, d_models)
    }
    network = fe.Network(ops=[
        EpochScheduler(fake_img_map),
        EpochScheduler(fake_score_map),
        ImageBlender(
            alpha=fade_in_alpha, inputs=("x", "x_low_res"), outputs="x_blend"),
        EpochScheduler(real_score_map),
        Interpolate(inputs=("x_fake", "x"), outputs="x_interp"),
        EpochScheduler(interp_score_map),
        GradientPenalty(inputs=("x_interp", "interp_score"), outputs="gp"),
        GLoss(inputs="fake_score", outputs="gloss"),
        DLoss(inputs=("real_score", "fake_score", "gp"), outputs="dloss"),
        EpochScheduler(g_update_map),
        EpochScheduler(d_update_map)
    ])
    traces = [
        AlphaController(alpha=fade_in_alpha,
                        fade_start_epochs=event_epoch[1:],
                        duration=phase_length,
                        batch_scheduler=batch_scheduler,
                        num_examples=len(dataset)),
        ModelSaver(model=g_models[-1],
                   save_dir=save_dir,
                   frequency=phase_length),
        ImageSaving(epoch_model_map={
            epoch - 1: model
            for (epoch,
                 model) in zip(event_epoch[1:] + [epochs + 1], g_models[:-1])
        },
                    save_dir=save_dir)
    ]
    estimator = fe.Estimator(
        pipeline=pipeline,
        network=network,
        epochs=epochs,
        traces=traces,
        max_train_steps_per_epoch=max_train_steps_per_epoch)
    return estimator
Example #6
0
def get_estimator(batch_size=4,
                  epochs=2,
                  max_train_steps_per_epoch=None,
                  log_steps=100,
                  style_weight=5.0,
                  content_weight=1.0,
                  tv_weight=1e-4,
                  save_dir=tempfile.mkdtemp(),
                  style_img_path='Vassily_Kandinsky,_1913_-_Composition_7.jpg',
                  data_dir=None):
    train_data, _ = mscoco.load_data(root_dir=data_dir,
                                     load_bboxes=False,
                                     load_masks=False,
                                     load_captions=False)

    style_img = cv2.imread(style_img_path)
    assert style_img is not None, "cannot load the style image, please go to the folder with style image"
    style_img = cv2.resize(style_img, (256, 256))
    style_img = (style_img.astype(np.float32) - 127.5) / 127.5

    pipeline = fe.Pipeline(train_data=train_data,
                           batch_size=batch_size,
                           ops=[
                               ReadImage(inputs="image", outputs="image"),
                               Normalize(inputs="image",
                                         outputs="image",
                                         mean=1.0,
                                         std=1.0,
                                         max_pixel_value=127.5),
                               Resize(height=256,
                                      width=256,
                                      image_in="image",
                                      image_out="image"),
                               LambdaOp(fn=lambda: style_img,
                                        outputs="style_image"),
                           ])

    model = fe.build(model_fn=StyleTransferNet,
                     model_name="style_transfer_net",
                     optimizer_fn=lambda: tf.optimizers.Adam(1e-3))

    network = fe.Network(ops=[
        ModelOp(inputs="image", model=model, outputs="image_out"),
        ExtractVGGFeatures(inputs="style_image", outputs="y_style"),
        ExtractVGGFeatures(inputs="image", outputs="y_content"),
        ExtractVGGFeatures(inputs="image_out", outputs="y_pred"),
        StyleContentLoss(style_weight=style_weight,
                         content_weight=content_weight,
                         tv_weight=tv_weight,
                         inputs=('y_pred', 'y_style', 'y_content',
                                 'image_out'),
                         outputs='loss'),
        UpdateOp(model=model, loss_name="loss")
    ])

    estimator = fe.Estimator(
        network=network,
        pipeline=pipeline,
        traces=ModelSaver(model=model, save_dir=save_dir, frequency=1),
        epochs=epochs,
        max_train_steps_per_epoch=max_train_steps_per_epoch,
        log_steps=log_steps)

    return estimator
Example #7
0
def get_estimator(epochs=200,
                  batch_size=128,
                  train_steps_per_epoch=None,
                  eval_steps_per_epoch=None,
                  save_dir=tempfile.mkdtemp(),
                  data_dir=None):
    # step 1. prepare pipeline
    train_data, eval_data = omniglot.load_data(root_dir=data_dir)
    test_data = eval_data.split(0.5)

    pipeline = fe.Pipeline(
        train_data=train_data,
        eval_data=eval_data,
        test_data=test_data,
        batch_size=batch_size,
        ops=[
            ReadImage(inputs="x_a", outputs="x_a", color_flag='gray'),
            ReadImage(inputs="x_b", outputs="x_b", color_flag='gray'),
            Sometimes(
                ShiftScaleRotate(image_in="x_a",
                                 image_out="x_a",
                                 shift_limit=0.05,
                                 scale_limit=0.2,
                                 rotate_limit=10,
                                 mode="train"),
                prob=0.89),
            Sometimes(
                ShiftScaleRotate(image_in="x_b",
                                 image_out="x_b",
                                 shift_limit=0.05,
                                 scale_limit=0.2,
                                 rotate_limit=10,
                                 mode="train"),
                prob=0.89),
            Minmax(inputs="x_a", outputs="x_a"),
            Minmax(inputs="x_b", outputs="x_b")
        ])

    # step 2. prepare model
    model = fe.build(model_fn=siamese_network, model_name="siamese_net", optimizer_fn="adam")

    network = fe.Network(ops=[
        ModelOp(inputs=["x_a", "x_b"], model=model, outputs="y_pred"),
        CrossEntropy(inputs=("y_pred", "y"), outputs="loss", form="binary"),
        UpdateOp(model=model, loss_name="loss")
    ])

    # step 3.prepare estimator
    traces = [
        LRScheduler(model=model, lr_fn=lr_schedule),
        Accuracy(true_key="y", pred_key="y_pred"),
        OneShotAccuracy(dataset=eval_data, model=model, output_name='one_shot_accuracy'),
        BestModelSaver(model=model, save_dir=save_dir, metric="one_shot_accuracy", save_best_mode="max"),
        EarlyStopping(monitor="one_shot_accuracy", patience=20, compare='max', mode="eval")
    ]

    estimator = fe.Estimator(network=network,
                             pipeline=pipeline,
                             epochs=epochs,
                             traces=traces,
                             train_steps_per_epoch=train_steps_per_epoch,
                             eval_steps_per_epoch=eval_steps_per_epoch)
    return estimator
Example #8
0
def get_estimator(epsilon=0.04,
                  epochs=20,
                  batch_size=32,
                  code_length=16,
                  train_steps_per_epoch=None,
                  eval_steps_per_epoch=None,
                  save_dir=tempfile.mkdtemp()):
    # step 1
    train_data, eval_data = cifair10.load_data()
    test_data = eval_data.split(0.5)
    pipeline = fe.Pipeline(train_data=train_data,
                           eval_data=eval_data,
                           test_data=test_data,
                           batch_size=batch_size,
                           ops=[
                               Normalize(inputs="x",
                                         outputs="x",
                                         mean=(0.4914, 0.4822, 0.4465),
                                         std=(0.2471, 0.2435, 0.2616)),
                               Hadamard(inputs="y",
                                        outputs="y_code",
                                        n_classes=10)
                           ])

    # step 2
    model = fe.build(model_fn=lambda: ecc_lenet(code_length=code_length),
                     optimizer_fn='adam')

    network = fe.Network(ops=[
        Watch(inputs="x", mode=('eval', 'test')),
        ModelOp(model=model, inputs="x", outputs="y_pred_code"),
        Hinge(inputs=("y_pred_code", "y_code"), outputs="base_hinge"),
        UpdateOp(model=model, loss_name="base_hinge"),
        UnHadamard(inputs="y_pred_code",
                   outputs="y_pred",
                   n_classes=10,
                   mode=('eval', 'test')),
        # The adversarial attack:
        FGSM(data="x",
             loss="base_hinge",
             outputs="x_adverse_hinge",
             epsilon=epsilon,
             mode=('eval', 'test')),
        ModelOp(model=model,
                inputs="x_adverse_hinge",
                outputs="y_pred_adv_hinge_code",
                mode=('eval', 'test')),
        Hinge(inputs=("y_pred_adv_hinge_code", "y_code"),
              outputs="adv_hinge",
              mode=('eval', 'test')),
        UnHadamard(inputs="y_pred_adv_hinge_code",
                   outputs="y_pred_adv_hinge",
                   n_classes=10,
                   mode=('eval', 'test')),
    ])
    # step 3
    traces = [
        Accuracy(true_key="y", pred_key="y_pred", output_name="base_accuracy"),
        Accuracy(true_key="y",
                 pred_key="y_pred_adv_hinge",
                 output_name="adversarial_accuracy"),
        BestModelSaver(model=model,
                       save_dir=save_dir,
                       metric="base_hinge",
                       save_best_mode="min",
                       load_best_final=True)
    ]
    estimator = fe.Estimator(pipeline=pipeline,
                             network=network,
                             epochs=epochs,
                             traces=traces,
                             train_steps_per_epoch=train_steps_per_epoch,
                             eval_steps_per_epoch=eval_steps_per_epoch,
                             monitor_names=["adv_hinge"])
    return estimator
Example #9
0
def get_estimator(epochs=24,
                  batch_size=128,
                  lr_epochs=100,
                  max_train_steps_per_epoch=None,
                  save_dir=tempfile.mkdtemp()):
    # step 1: prepare dataset
    train_data, test_data = load_data()
    pipeline = fe.Pipeline(train_data=train_data,
                           eval_data=test_data,
                           batch_size=batch_size,
                           ops=[
                               Normalize(inputs="x",
                                         outputs="x",
                                         mean=(0.4914, 0.4822, 0.4465),
                                         std=(0.2471, 0.2435, 0.2616)),
                               PadIfNeeded(min_height=40,
                                           min_width=40,
                                           image_in="x",
                                           image_out="x",
                                           mode="train"),
                               RandomCrop(32,
                                          32,
                                          image_in="x",
                                          image_out="x",
                                          mode="train"),
                               Sometimes(
                                   HorizontalFlip(image_in="x",
                                                  image_out="x",
                                                  mode="train")),
                               CoarseDropout(inputs="x",
                                             outputs="x",
                                             mode="train",
                                             max_holes=1),
                               Onehot(inputs="y",
                                      outputs="y",
                                      mode="train",
                                      num_classes=10,
                                      label_smoothing=0.2)
                           ])

    # step 2: prepare network
    model = fe.build(model_fn=ResNet9, optimizer_fn="sgd")
    network = fe.Network(ops=[
        ModelOp(model=model, inputs="x", outputs="y_pred"),
        CrossEntropy(inputs=("y_pred", "y"), outputs="ce"),
        UpdateOp(model=model, loss_name="ce")
    ])

    # get the max learning rate
    lr_max = search_max_lr(pipeline=pipeline,
                           model=model,
                           network=network,
                           epochs=lr_epochs)
    lr_min = lr_max / 40
    print(f"The maximum LR: {lr_max}, and minimun LR: {lr_min}")
    mid_step = int(epochs * 0.45 * len(train_data) / batch_size)
    end_step = int(epochs * len(train_data) / batch_size)

    # reinitialize the model
    model = fe.build(model_fn=ResNet9, optimizer_fn="sgd")
    network = fe.Network(ops=[
        ModelOp(model=model, inputs="x", outputs="y_pred"),
        CrossEntropy(inputs=("y_pred", "y"), outputs="ce"),
        UpdateOp(model=model, loss_name="ce")
    ])

    # step 3: prepare estimator
    traces = [
        Accuracy(true_key="y", pred_key="y_pred"),
        BestModelSaver(model=model,
                       save_dir=save_dir,
                       metric="accuracy",
                       save_best_mode="max"),
        LRScheduler(model=model,
                    lr_fn=lambda step: super_schedule(step, lr_max, lr_min,
                                                      mid_step, end_step))
    ]
    estimator = fe.Estimator(
        pipeline=pipeline,
        network=network,
        epochs=epochs,
        traces=traces,
        max_train_steps_per_epoch=max_train_steps_per_epoch)
    return estimator