def write_one_fcs(track_nextdata) :
nextdata, newfname = fcsparser.rewrite(path, '.', dataset_start=track_nextdata)
print newfname
if (nextdata ==0 ):
return -1;
else:
return track_nextdata+ nextdata
################### write csv metadata file ###################
def genCSVMetadataFile(target, sample):
f = open(target+"_m.csv", 'w')
meta=sample.meta
## remove __original__ and __header__
del meta['__header__']
del meta['__original__']
k=sample.meta.keys()
writer = csv.DictWriter(f,k)
writer.writeheader()
writer.writerow(sample.meta)
f.close()
####################MAIN###################################
if __name__ == "__main__":
rankid=1
if oneOnly :
nextdata, newfile = fcsparser.rewrite(datafile, outdir, dataset_start=0)
processOne(newfile)
else:
n=0
nextdata=-1
file_size = os.path.getsize(datafile)
while (nextdata != 0 and n < file_size):
nextdata, newfile=fcsparser.rewrite(datafile, outdir, dataset_start=n)
n=nextdata+n
processOne(newfile)
rankid=rankid+1
