def vital_unit_validation(field_name, resource, system_url):
path = field_name.split('.')
path.pop(0)
systems_to_validate = utils.traverse(resource, path + ["system"])
codes_to_validate = utils.traverse(resource, path + ["code"])
resource_components = utils.traverse(resource, ["component"])
values_to_validate = [resource] + (resource_components or [])
if not isinstance(systems_to_validate, list):
systems_to_validate = [systems_to_validate]
if not isinstance(codes_to_validate, list):
codes_to_validate = [codes_to_validate]
if any(system != system_url for system in systems_to_validate):
return {"resource": resource, "status": "Wrong System"}
if any(not in_value_set({"code": code}, system_url) for code in codes_to_validate):
return {"resource": resource, "status": "Invalid Code"}
for value in values_to_validate:
codes_with_unit_requirements = [c["code"] for c in value["code"]["coding"]
if c["code"] in vitals_code_lookup]
for code_with_unit_requirement in codes_with_unit_requirements:
required_code_list = vitals_code_lookup[code_with_unit_requirement]
if not value["valueQuantity"]["code"] in required_code_list:
return {"resource": resource, "status": "Mismatched vital unit and vital type"}
return None
def step_impl(context, system_url, field_name):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
resources = get_resources(context.response.json(), filter_type)
bad_resource_results = []
for res in resources:
if ArgonautObservationDecider(res).should_validate():
found = utils.traverse(res, path)
if found:
vital_validation_status = vital_unit_validation(field_name, res, system_url)
if vital_validation_status:
bad_resource_results.append(vital_validation_status)
assert len(bad_resource_results) == 0, utils.bad_response_assert_with_resource(
response=context.response,
message=ERROR_UCUM_CODES,
resource=bad_resource_results,
field_name=field_name)
def step_impl(context, field_name, value):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
resources = get_resources(context.response.json(), filter_type)
for res in resources:
if ArgonautObservationDecider(res).should_validate():
found = utils.traverse(res, path)
assert found, utils.bad_response_assert_with_resource(
response=context.response,
message=ERROR_FIELD_NOT_PRESENT,
resource=res,
field=field_name,
json=json.dumps(res, indent=2))
assert value in found, utils.bad_response_assert_with_resource(
response=context.response,
message=ERROR_WRONG_FIXED,
resource=res,
values=found,
value=value)
def step_impl(context, resource_type, field_name):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
resources = get_resources(context.response.json(), filter_type)
for res in resources:
try:
reference = utils.traverse(res, path).get('reference')
# Validate the reference for FHIR compliance formatting.
# http://hl7.org/fhir/references.html
reference_regex = r'((http|https)://([A-Za-z0-9\\\.\:\%\$]\/)*)?(' + \
resource_type + r')\/[A-Za-z0-9\-\.]{1,64}(\/_history\/[A-Za-z0-9\-\.]{1,64})?'
compiled_regex = re.compile(reference_regex)
regex_search_results = compiled_regex.search(reference)
except AttributeError:
reference = ''
assert regex_search_results, \
utils.bad_response_assert(context.response,
ERROR_REFERENCE_MATCH,
reference=reference,
resource_type=resource_type)
def step_impl(context, field_name, sub_field):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
sub_path = sub_field.split('.')
sub_type = sub_path.pop(0)
resources = get_resources(context.response.json(), filter_type)
for res in resources:
found = utils.traverse(res, path)
for item in found:
match = utils.traverse(item, sub_path)
assert match is not None, \
utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_REQUIRED,
resource=res,
name=sub_type)
def step_impl(context, name, field_name):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
resources = get_resources(context.response.json(), filter_type)
for res in resources:
found = utils.traverse(res, path)
assert len(found) > 0, utils.bad_response_assert(context.response,
ERROR_REQUIRED,
name=name)
def step_impl(context, name, field_one_name, field_two_name):
if not StepDecider(context).should_run_test():
return
path_one = field_one_name.split('.')
path_two = field_two_name.split('.')
filter_type = path_one.pop(0)
assert filter_type == path_two.pop(0)
resources = get_resources(context.response.json(), filter_type)
for res in resources:
found_one = utils.traverse(res, path_one)
found_two = utils.traverse(res, path_two)
assert (found_one is not None) or (found_two is not None), \
utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_REQUIRED,
resource=res,
name=name
)
def step_impl(context, field_name, value_set_url_one, value_set_url_two):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
resources = get_resources(context.response.json(), filter_type)
system_names = '{0} or {1}'.format(value_set_url_one, value_set_url_two)
for res in resources:
found = utils.traverse(res, path)
if isinstance(found, str):
found = [found]
elif isinstance(found, dict):
assert 'coding' in found, \
utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_CODING_MISSING,
resource=res,
field_name=field_name,
json=json.dumps(found, indent=2))
found = [
coding.get('code') for coding in found.get('coding')
if in_value_set(coding, value_set_url_one)
or in_value_set(coding, value_set_url_two)
]
assert found, \
utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_MISSING_SYSTEM_CODING,
resource=res,
field_name=field_name,
system=system_names)
for code in found:
try:
valid = systems.validate_code(code, value_set_url_one) or \
systems.validate_code(code, value_set_url_two)
except systems.SystemNotRecognized:
valid = False
assert valid, utils.bad_response_assert_with_resource(
response=context.response,
message=ERROR_INVALID_BINDING,
resource=res,
code=code,
system=system_names,
json=json.dumps(res, indent=2))
def found_at_least_one(resources, path, value):
"""
Return a boolean indicating if we found a resource with
the specified path declared, having the specified value.
:param resources: A list of dictionaries.
:param path: A list representing the steps in the path, top element is NOT the resource type.
:param value: The value you want the last element in the path to have.
:return: Boolean
"""
for res in resources:
found_path = utils.traverse(res, path)
if found_path and value in found_path:
return True
return False
def step_impl(context, field_name, value_set_url_one, value_set_url_two):
if not StepDecider(context).should_run_test():
return
path = field_name.split('.')
filter_type = path.pop(0)
resources = get_resources(context.response.json(), filter_type)
system_names = '{0} or {1}'.format(value_set_url_one, value_set_url_two)
for res in resources:
found = utils.traverse(res, path)
if isinstance(found, str):
found = [found]
elif isinstance(found, dict):
assert 'coding' in found, \
utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_CODING_MISSING,
resource=res,
field_name=field_name,
json=json.dumps(found, indent=2))
found = [coding.get('code') for coding in found.get('coding')
if in_value_set(coding, value_set_url_one) or
in_value_set(coding, value_set_url_two)]
assert found, \
utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_MISSING_SYSTEM_CODING,
resource=res,
field_name=field_name,
system=system_names)
for code in found:
try:
valid = systems.validate_code(code, value_set_url_one) or \
systems.validate_code(code, value_set_url_two)
except systems.SystemNotRecognized:
valid = False
assert valid, utils.bad_response_assert_with_resource(response=context.response,
message=ERROR_INVALID_BINDING,
resource=res,
code=code,
system=system_names,
json=json.dumps(res, indent=2))
