def get_bboxes(union_bbox,
chunk_size,
overlap=(0, 0, 0),
back_shift_small=False,
backend='cloudvolume'):
'''Use ffn subbox calculator to generate sequential overlapping bboxes'''
if isinstance(union_bbox, Bbox):
ffn_style_bbox = bounding_box.BoundingBox(np.array(union_bbox.minpt),
np.array(union_bbox.size3()))
else:
ffn_style_bbox = union_bbox
calc = bounding_box.OrderlyOverlappingCalculator(
outer_box=ffn_style_bbox,
sub_box_size=chunk_size,
overlap=overlap,
include_small_sub_boxes=True,
back_shift_small_sub_boxes=back_shift_small)
bbs = list(calc.generate_sub_boxes())
if backend == 'ffn':
pass
elif backend == 'cloudvolume':
bbs = [Bbox(a=bb.start, b=bb.start + bb.size) for bb in bbs]
else:
raise ValueError('Use either ffn or cloudvolume')
return bbs
def get_chunk_bboxes(union_bbox, chunk_size):
ffn_style_bbox = bounding_box.BoundingBox(
np.array(union_bbox.minpt), np.array(union_bbox.size3()))
calc = bounding_box.OrderlyOverlappingCalculator(
outer_box=ffn_style_bbox,
sub_box_size=chunk_size,
overlap=[0,0,0],
include_small_sub_boxes=True,
back_shift_small_sub_boxes=False)
bbs = [ffn_bb for ffn_bb in calc.generate_sub_boxes()]
for ffn_bb in bbs:
logging.warning('sub_bb: %s', ffn_bb)
return bbs
def divide_bounding_box(bbox, subvolume_size, overlap):
"""divide up into valid subvolumes."""
# deal with parsed bbox missing "end" attr
start = geom_utils.ToNumpy3Vector(bbox.start)
size = geom_utils.ToNumpy3Vector(bbox.size)
bbox = bounding_box.BoundingBox(start, size)
calc = bounding_box.OrderlyOverlappingCalculator(
outer_box=bbox,
sub_box_size=subvolume_size,
overlap=overlap,
include_small_sub_boxes=True,
back_shift_small_sub_boxes=False)
return [bb for bb in calc.generate_sub_boxes()]
def get_chunk_bboxes(union_bbox,
chunk_size,
overlap,
include_small_sub_boxes=True,
back_shift_small_sub_boxes=False):
ffn_style_bbox = bounding_box.BoundingBox(np.array(union_bbox.minpt),
np.array(union_bbox.size2()))
calc = bounding_box.OrderlyOverlappingCalculator(
outer_box=ffn_style_bbox,
sub_box_size=chunk_size,
overlap=overlap,
include_small_sub_boxes=include_small_sub_boxes,
back_shift_small_sub_boxes=back_shift_small_sub_boxes)
bbs = [ffn_to_cv(ffn_bb) for ffn_bb in calc.generate_sub_boxes()]
return bbs