def do_test(self, fname):
from fhirtordf.loaders.fhirresourceloader import FHIRResource
json_file = fname + ".json"
turtle_file = fname + ".ttl"
target = FHIRResource(self.fhir_ontology,
os.path.join(self.base_dir, json_file),
"http://hl7.org/fhir/")
turtle_fname = os.path.join(self.base_dir, turtle_file)
source = PrettyGraph()
source.load(turtle_fname, format="turtle")
self.maxDiff = None
self.assertEqual(
*rdf_compare_split(source, target.graph, ignore_owl_version=False))
def test_data_entry(self):
save_output = False
from fhirtordf.loaders.fhirresourceloader import FHIRResource
with open(
os.path.join(self.base_dir, 'synthea_data',
'Adams301_Keyshawn30_74.json')) as f:
collection = load(f)
source = FHIRResource(self.fhir_ontology,
None,
"http://standardhealthrecord.org/fhir/",
data=collection.entry[0].resource)
turtle_fname = os.path.join(self.base_dir, 'synthea_data',
'Adams301_Keyshawn30_74_entry0.ttl')
if save_output:
with open(turtle_fname, 'w') as output:
output.write(str(source))
target = PrettyGraph()
target.load(turtle_fname, format="turtle")
# Note: This will fail if we use the pure turtle serializer (vs our changes in this package)
self.maxDiff = None
self.assertEqual(
'', rdf_compare(source.graph, target, ignore_owl_version=True))
self.assertFalse(save_output, "Update output file always fails")