Python GenericDialogPlus.getStringFields Examples

Example #1

File: fluo_count.py Project: ToniWestbrook/imagej-plugins

def optionsDialog():
    dialog = GenericDialogPlus("Fluorescent Cell Counting")
    dialog.addDirectoryField("Image Directory", "")
    dialog.addFileField("Training Model", "")
    dialog.addStringField("Output Subdirectory", "output", 20)
    dialog.addStringField("Probability Threshold", "0.67", 20)
    dialog.addStringField("Minimum Pixel Size", "2", 20)
    dialog.showDialog()

    # Check if canceled
    if dialog.wasCanceled(): return None

    textVals = [x.text for x in dialog.getStringFields()]

    return textVals

Example #2

File: weka_percentage.py Project: ToniWestbrook/imagej-plugins

def optionsDialog():
    dialog = GenericDialogPlus("Automated Weka Percentages")
    dialog.addDirectoryField("Image Directory", "")
    dialog.addFileField("Training Model", "")
    dialog.addStringField("Output Subdirectory", "output", 20)
    dialog.addStringField("Probability Threshold", "0.75", 20)
    dialog.showDialog()

    # Check if canceled
    if dialog.wasCanceled(): return None

    textVals = [x.text for x in dialog.getStringFields()]
    #boolVals = [x.getState() for x in dialog.getCheckboxes()]

    return textVals

Example #3

def optionsDialog():
    dialog = GenericDialogPlus("Cilia Sizes")
    dialog.addDirectoryField("Image Directory", DEFAULT_DIR)
    dialog.addFileField("Training Model", DEFAULT_TRAIN)
    dialog.addStringField("Output Subdirectory", "output", 20)
    dialog.addStringField("Confocal Channel", "1", 20)
    dialog.addStringField("Probability Threshold", "0.67", 20)
    dialog.addStringField("Minimum Pixel Size", "2", 20)
    dialog.showDialog()

    # Check if canceled
    if dialog.wasCanceled(): return None

    textVals = [x.text for x in dialog.getStringFields()]

    return textVals

Example #4

def optionsDialog():
	dialog = GenericDialogPlus("Automated Size Analysis")
	dialog.addDirectoryField("Image Directory", "")
	dialog.addStringField("Output Subdirectory", "output", 20)
	dialog.addStringField("Minimum Pixel Size", "50000", 20)
	dialog.addStringField("Minimum Roundness", "0.4", 20)
	dialog.addStringField("Gaussian Blur", "6", 20)
	dialog.addStringField("Rotation Steps", "3", 20)
        dialog.addStringField("Thresholds", ",".join(THRESHOLDS), 20)
	dialog.addCheckbox("Rotate Images", True)
	dialog.addCheckbox("Multiple Thresholds", True)
	dialog.showDialog()

	# Check if canceled
	if dialog.wasCanceled(): return None

	textVals = [x.text for x in dialog.getStringFields()]
	boolVals = [x.getState() for x in dialog.getCheckboxes()]

	return textVals + boolVals

Example #5

File: CMTK_Registration_GUI.py Project: erichamc/fiji-cmtk-gui

gd = GenericDialogPlus('CMTK Registration GUI')

# 0.1) Identify path to CMTK binaries
bindir=cmtkgui.install_dir()
print 'bindir is ' + bindir
# 0.1) Identify path to munger.pl script
#munger='/Users/jefferis/bin/munger.pl'
munger=cmtkgui.tool_path('munger')
print 'munger is ' + munger
gd.addHelp("http://flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:registration_gui")

dirFieldWidth=50
gdMargin=130
gd.addDirectoryField("Registration Folder",None,dirFieldWidth)
regrootf = gd.getStringFields().get(0)
# reference brain
gd.addFileField("Reference Brain", "",dirFieldWidth)
# input directory/image
gd.addDirectoryOrFileField("Input Image or Image Directory",None,dirFieldWidth)
imgdirf = gd.getStringFields().get(2)

gd.setInsets(10,gdMargin,10)
gd.addMessage("Output folders:")
outputf=gd.getMessage()

# what to do: affine/warp/reformat
gd.setInsets(10,200,10)
gd.addCheckboxGroup(3,2,["affine","01","warp","02","reformat","03"],[True,True,True,True,True,True],["Registration Actions","Reformat Channels"])
#gd.addCheckboxGroup(1,3,["01","02","03"],[True,True,True],["Reformat Channels"])

Example #6

    # 0.1) Identify path to CMTK binaries
    bindir = cmtkgui.install_dir()
    print 'bindir is ' + bindir
    # 0.1) Identify path to munger.pl script
    #munger='/Users/jefferis/bin/munger.pl'
    munger = cmtkgui.tool_path('munger')
    print 'munger is ' + munger
    gd.addHelp(
        "http://flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:registration_gui"
    )

    dirFieldWidth = 50
    gdMargin = 130
    gd.addDirectoryField("Registration Folder", None, dirFieldWidth)
    regrootf = gd.getStringFields().get(0)
    # reference brain
    gd.addFileField("Reference Brain", "", dirFieldWidth)
    # input directory/image
    gd.addDirectoryOrFileField("Input Image or Image Directory", None,
                               dirFieldWidth)
    imgdirf = gd.getStringFields().get(2)

    gd.setInsets(10, gdMargin, 10)
    gd.addMessage("Output folders:")
    outputf = gd.getMessage()

    # what to do: affine/warp/reformat
    gd.setInsets(10, 200, 10)
    gd.addCheckboxGroup(3, 2, ["affine", "01", "warp", "02", "reformat", "03"],
                        [True, True, True, True, True, True],