def test_multi_region_all_empty(self):
''' Make sure multiple regions that are all empty work '''
mock_d = {'1': [], '2': []}
self.make_ddir(mock_d)
drds(self.tempdir, fixtures.RUNFILE_PATH)
result = fixtures.mock_demultiplex_directory(self.tempdir)
expect = {1: [], 2: []}
common.ere(expect, result)
def test_single_region_single(self):
''' Make sure a single region with single file works '''
mock_d = {'1': ['454Reads.' + fixtures.MIDPREFIX + 'RL1.sff']}
self.make_ddir(mock_d)
drds(self.tempdir, fixtures.RUNFILE_PATH)
expect = {1: ['Sample1__1__RL1__2013_05_01__pH1N1.sff']}
result = fixtures.mock_demultiplex_directory(self.tempdir)
common.ere(expect, result)
def test_missingfromrunfile( self ):
''' Make sure sff files in the directory that are not in runfile are ignored '''
mock_d = {'1':['454Reads.'+fixtures.MIDPREFIX+'RL1.sff','454Reads.'+fixtures.MIDPREFIX+'IX1.sff']}
self.make_ddir( mock_d )
drds( self.tempdir, fixtures.RUNFILE_PATH )
result = fixtures.mock_demultiplex_directory( self.tempdir )
expect = {1:['Sample1__1__RL1__2013_05_01__pH1N1.sff','454Reads.'+fixtures.MIDPREFIX+'IX1.sff']}
common.ere( expect[1], result[1] )
def test_multi_region_all_empty( self ):
''' Make sure multiple regions that are all empty work '''
mock_d = {'1':[],'2':[]}
self.make_ddir( mock_d )
drds( self.tempdir, fixtures.RUNFILE_PATH )
result = fixtures.mock_demultiplex_directory( self.tempdir )
expect = {1:[],2:[]}
common.ere( expect, result )
def test_single_region_single( self ):
''' Make sure a single region with single file works '''
mock_d = {'1':['454Reads.'+fixtures.MIDPREFIX+'RL1.sff']}
self.make_ddir( mock_d )
drds( self.tempdir, fixtures.RUNFILE_PATH )
expect = {1:['Sample1__1__RL1__2013_05_01__pH1N1.sff']}
result = fixtures.mock_demultiplex_directory( self.tempdir )
common.ere( expect, result )
def test_multi_region_all_single( self ):
''' Make sure multiple regions that have single files work '''
mp = fixtures.MIDPREFIX
mock_d = {'1':['454Reads.'+mp+'RL1.sff'],'2':['454Reads.'+mp+'TI1.sff']}
self.make_ddir( mock_d )
drds( self.tempdir, fixtures.RUNFILE_PATH )
result = fixtures.mock_demultiplex_directory( self.tempdir )
expect = {1:['Sample1__1__RL1__2013_05_01__pH1N1.sff'],2:['Sample52__2__TI1__2013_05_01__Den4.sff']}
common.ere( expect, result )
def test_multi_region_all_single(self):
''' Make sure multiple regions that have single files work '''
mp = fixtures.MIDPREFIX
mock_d = {
'1': ['454Reads.' + mp + 'RL1.sff'],
'2': ['454Reads.' + mp + 'TI1.sff']
}
self.make_ddir(mock_d)
drds(self.tempdir, fixtures.RUNFILE_PATH)
result = fixtures.mock_demultiplex_directory(self.tempdir)
expect = {
1: ['Sample1__1__RL1__2013_05_01__pH1N1.sff'],
2: ['Sample52__2__TI1__2013_05_01__Den4.sff']
}
common.ere(expect, result)
def test_missingfromrunfile(self):
''' Make sure sff files in the directory that are not in runfile are ignored '''
mock_d = {
'1': [
'454Reads.' + fixtures.MIDPREFIX + 'RL1.sff',
'454Reads.' + fixtures.MIDPREFIX + 'IX1.sff'
]
}
self.make_ddir(mock_d)
drds(self.tempdir, fixtures.RUNFILE_PATH)
result = fixtures.mock_demultiplex_directory(self.tempdir)
expect = {
1: [
'Sample1__1__RL1__2013_05_01__pH1N1.sff',
'454Reads.' + fixtures.MIDPREFIX + 'IX1.sff'
]
}
common.ere(expect[1], result[1])
