'--overlays',
type=bool,
required=False,
default=False,
help='turn on overlays to plot wing angles and distance bars')
args = parser.parse_args()
zoom_fmf = args.zoom
wide_fmf = args.wide
savedir = args.savedir
overlays_value = args.overlays
#os.system(ffmpeg -f image2 -r 15 -i _tmp%05d.png -vcodec mpeg4 -y (_VIDEO_DIR + '/flymad_annotated.mp4'))
vid = data_movies.FlyPanel(zoom_fmf, savedir,
utilities.parse_fmftime(zoom_fmf)[0],
overlays_value)
image_height = vid.get_frame(0)[0].shape[0]
image_width = vid.get_frame(0)[0].shape[1]
for frame_number in range(vid.get_n_frames()):
if os.path.exists(savedir + '/temp_png/_tmp%05d.png' % (frame_number)):
continue
fig = plt.figure(figsize=(image_width / 100, image_height * 1.2 / 100),
dpi=200.399,
frameon=False)
make_panel(vid, 0, 0, frame_number)
'--bottomlabel',
type=str,
required=False,
default="Experiment",
help=
'Label for bottom data. example: P1>CsCHRIMSON & $\mathregular{SHIBIRE^{TS}}$'
)
args = parser.parse_args()
top_fmf = args.topfmf
bottom_fmf = args.bottomfmf
savedir = args.savedir
#os.system(ffmpeg -f image2 -r 15 -i _tmp%05d.png -vcodec mpeg4 -y (_VIDEO_DIR + '/flymad_annotated.mp4'))
ctrlfly = data_movies.FlyPanel(top_fmf, savedir,
utilities.parse_fmftime(top_fmf)[0])
expfly = data_movies.FlyPanel(bottom_fmf, savedir,
utilities.parse_fmftime(bottom_fmf)[0])
image_height = ctrlfly.get_frame(0)[0].shape[0] + expfly.get_frame(
0)[0].shape[0]
image_width = expfly.get_frame(0)[0].shape[1] * 3
for frame_number in range(9450): #ctrlfly.get_n_frames()):
if os.path.exists(savedir + '/temp_png/_tmp%05d.png' % (frame_number)):
continue
fig = plt.figure(figsize=(image_width / 100, image_height / 100),
dpi=200.399)
parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument('--fmf', type=str, required=True,
help='path to fmf directory')
parser.add_argument('--savedir', type=str, required=True,
help='path to save directory')
parser.add_argument('--label', type=str, required=False, default="Control",
help='label for top data')
args = parser.parse_args()
fmf = args.fmf
savedir = args.savedir
#os.system(ffmpeg -f image2 -r 15 -i _tmp%05d.png -vcodec mpeg4 -y (_VIDEO_DIR + '/flymad_annotated.mp4'))
fly = data_movies.FlyPanel(fmf, savedir, utilities.parse_fmftime(fmf)[0])
image_height = (fly.get_frame(0)[0].shape[0] )*2
image_width = fly.get_frame(0)[0].shape[1] *2:
if not os.path.exists(savedir + '/temp_png):
os.makedirs(savedir + '/temp_png)
for frame_number in range(fly.get_n_frames()):
if os.path.exists(savedir + '/temp_png/_tmp%05d.png'%(frame_number)):
continue
fig = plt.figure(figsize=(image_width/100, image_height/100), dpi=200.399 )
make_panel(fly, 0, 0, frame_number, args.label)
#plt.show()