def importCherryPickingTaq(self):
"""Taq"""
title = "Choose cherrypicking file..."
cherryFile, f = QtGui.QFileDialog.getOpenFileName(self, title, self.path)
title = "Choose lightcycler files..."
filter_mask = "Lightcycler text files (*.txt)"
lightFileNames, f = QtGui.QFileDialog.getOpenFileNames(self, title, self.path, filter_mask)
fileDataLists, ok = LCDialog.importLC(lightFileNames)
lc = pd.read_excel(cherryFile, sheetname="All")
lc = lc[["Source plate", "Dest plate", "Source Well", "Destination Well"]]
lc.columns = ["Plate ID", "CP Plate", "Well", "CP Well"]
lc["LC Well"] = ""
lc["Result"] = ""
lc["Experiment"] = ""
lc = lc.set_index(["CP Plate", "CP Well"])
for fDL in fileDataLists:
name, plate, exp, robot, pos = fDL
lcFrame = pd.read_table(name, sep="\t", header=1)
lcFrame = lcFrame.drop(["Include", "Color", "Name", "Status", "465-510", "533-580", "Score"], 1)
lcFrame["Experiment"] = exp
lcFrame["CP Plate"] = plate
lcFrame["CP Well"] = lcFrame["Pos"].map(lambda x: convert[robot][pos].get(x, ""))
lcFrame["Call"] = lcFrame["Call"].astype(str)
lcFrame.columns = ["LC Well", "Result", "Experiment", "CP Plate", "CP Well"]
lcFrame = lcFrame[lcFrame["CP Well"] != ""]
lcFrame = lcFrame.set_index(["CP Plate", "CP Well"])
lc.update(lcFrame)
lc = lc.set_index(["Plate ID", "Well"])
lc = lc[lc["Result"] != ""]
self.resultsTable.table = self.resultsTable.table.set_index(["Plate ID", "Well"])
self.resultsTable.table.update(lc)
self.resultsTable.table = self.resultsTable.table.reset_index()
self.__updateView()
def importTaqmanFile(self):
"""Imports Taqman .txt files and adds the results, locating samples
by plate name (taken from filename) and well."""
title = "Import Taqman file(s)..."
filter_mask = "Taqman text files (*.txt)"
lightFileNames, f = QtGui.QFileDialog.getOpenFileNames(self, title, self.path, filter_mask)
fileDataLists, ok = LCDialog.importLC(lightFileNames)
if ok:
self.resultsTable.addTaqFiles(fileDataLists)
self.__updateView()
