def testTopLevelIdsUnique(self):
datasetId = "a"
idStr = "b"
dataset = datasets.Dataset(datasetId)
readGroupSet = reads.AbstractReadGroupSet(dataset, idStr)
variantSet = variants.AbstractVariantSet(dataset, idStr)
self.assertNotEqual(readGroupSet.getId(), variantSet.getId())
def setUp(self):
self.request = protocol.SearchReadsRequest()
self.request.referenceId = "chr1"
self.backend = backend.SimulatedBackend()
self.datasetId = self.backend.getDatasetIds()[0]
self.dataset = self.backend.getDataset(self.datasetId)
self.readGroupSetLocalId = "aReadGroupSet"
self.readGroupLocalId = "aReadGroup"
self.readGroupSet = reads.AbstractReadGroupSet(
self.dataset, self.readGroupSetLocalId)
def testGetReadGroup(self):
path = "/readgroups"
for dataset in self.backend.getDatasets():
for readGroupSet in dataset.getReadGroupSets():
for readGroup in readGroupSet.getReadGroups():
responseObject = self.sendGetObject(
path, readGroup.getId(), protocol.ReadGroup)
self.verifyReadGroupsEqual(responseObject, readGroup)
for badId in self.getBadIds():
readGroup = reads.AbstractReadGroup(readGroupSet, badId)
self.verifyGetMethodFails(path, readGroup.getId())
for badId in self.getBadIds():
readGroupSet = reads.AbstractReadGroupSet(dataset, badId)
self.verifyGetMethodFails(path, readGroupSet.getId())
for badId in self.getBadIds():
self.verifyGetMethodFails(path, badId)
def getReadGroupSet(self):
return reads.AbstractReadGroupSet(self.getDataset(), "readGroupSet")
