Python ExperimentCompoundId Examples

Example #1

File: test_compound_ids.py Project: Philip-Wu/server

 def testExperiment(self):
     readGroup = self.getReadGroup()
     readGroupSet = readGroup.getParentContainer()
     dataset = readGroupSet.getParentContainer()
     localId = "experiment"
     cid = datamodel.ExperimentCompoundId(readGroup.getCompoundId(),
                                          localId)
     self.assertRaises(ValueError, datamodel.ExperimentCompoundId,
                       readGroup.getCompoundId())
     self.assertEqual(cid.dataset, dataset.getLocalId())
     self.assertEqual(cid.read_group_set, readGroupSet.getLocalId())
     self.assertEqual(cid.read_group, readGroup.getLocalId())
     self.assertEqual(cid.experiment, localId)

Example #2

File: reads.py Project: snehitp/server

 def getExperimentId(self):
     """
     Returns the id of the experiment used for this read group
     """
     return str(
         datamodel.ExperimentCompoundId(self.getCompoundId(), 'experiment'))