def getReadGroup(self, id_):
"""
Returns the ReadGroup with the specified id if it exists in this
ReadGroupSet, or raises a ReadGroupNotFoundException otherwise.
"""
if id_ not in self._readGroupIdMap:
raise exceptions.ReadGroupNotFoundException(id_)
return self._readGroupIdMap[id_]
def getReadGroupSet(self, id_):
"""
Returns the ReadGroupSet with the specified name, or raises
a ReadGroupSetNotFoundException otherwise.
"""
if id_ not in self._readGroupSetIdMap:
raise exceptions.ReadGroupNotFoundException(id_)
return self._readGroupSetIdMap[id_]
def _getContainer(self):
if len(self._request.readGroupIds) != 1:
if len(self._request.readGroupIds) == 0:
msg = "Read search requires a readGroup to be specified"
else:
msg = "Read search over multiple readGroups not supported"
raise exceptions.NotImplementedException(msg)
readGroupId = self._request.readGroupIds[0]
try:
readGroup = self._containerIdMap[self._request.readGroupIds[0]]
except KeyError:
raise exceptions.ReadGroupNotFoundException(readGroupId)
return readGroup