def __init__(self, **kwd): """ A Fastsearch Index consists of a binary file with the fingerprints and a pointer the actual molecule file. """ Binary.__init__(self, **kwd) self.add_composite_file('molecule.fs', is_binary=True, description='OpenBabel Fastsearch Index') self.add_composite_file('molecule.sdf', optional=True, is_binary=False, description='Molecule File') self.add_composite_file('molecule.smi', optional=True, is_binary=False, description='Molecule File') self.add_composite_file('molecule.inchi', optional=True, is_binary=False, description='Molecule File') self.add_composite_file('molecule.mol2', optional=True, is_binary=False, description='Molecule File') self.add_composite_file('molecule.cml', optional=True, is_binary=False, description='Molecule File')
def __init__(self, **kwd): Binary.__init__(self, **kwd) # Binary model self.add_composite_file('model.hmm.h3m', is_binary=True) # SSI index for binary model self.add_composite_file('model.hmm.h3i', is_binary=True) # Profiles (MSV part) self.add_composite_file('model.hmm.h3f', is_binary=True) # Profiles (remained) self.add_composite_file('model.hmm.h3p', is_binary=True)
def __init__(self, **kwd): Binary.__init__(self, **kwd) """The metadata""" self.add_composite_file('imzml', description='The imzML metadata component.', is_binary=False) """The mass spectral data""" self.add_composite_file( 'ibd', description='The mass spectral data component.', is_binary=True)
def __init__(self, **kwd): Binary.__init__(self, **kwd) self.add_composite_file( 'wiff', description='AB SCIEX files in .wiff format. This can contain all needed information or only metadata.', is_binary=True) self.add_composite_file( 'wiff_scan', description='AB SCIEX spectra file (wiff.scan), if the corresponding .wiff file only contains metadata.', optional='True', is_binary=True)
def __init__(self, **kwd): Binary.__init__(self, **kwd) """The header file. Provides information about dimensions, identification, and processing history.""" self.add_composite_file('hdr', description='The Analyze75 header file.', is_binary=False) """The image file. Image data, whose data type and ordering are described by the header file.""" self.add_composite_file('img', description='The Analyze75 image file.', is_binary=True) """The optional t2m file.""" self.add_composite_file('t2m', description='The Analyze75 t2m file.', optional='True', is_binary=True)
def __init__(self, **kwd): Binary.__init__(self, **kwd) self.add_composite_file('shapefile.shp', description='Geometry File (shp)', is_binary=True, optional=False) self.add_composite_file('shapefile.shx', description='Geometry index File (shx)', is_binary=True, optional=False) self.add_composite_file('shapefile.dbf', description='Columnar attributes for each shape (dbf)', is_binary=True, optional=False) # optional self.add_composite_file('shapefile.prj', description='Projection description (prj)', is_binary=False, optional=True) self.add_composite_file('shapefile.sbn', description='Spatial index of the features (sbn)', is_binary=True, optional=True) self.add_composite_file('shapefile.sbx', description='Spatial index of the features (sbx)', is_binary=True, optional=True) self.add_composite_file('shapefile.fbn', description='Read only spatial index of the features (fbn)', is_binary=True, optional=True) self.add_composite_file('shapefile.fbx', description='Read only spatial index of the features (fbx)', is_binary=True, optional=True) self.add_composite_file('shapefile.ain', description='Attribute index of the active fields in a table (ain)', is_binary=True, optional=True) self.add_composite_file('shapefile.aih', description='Attribute index of the active fields in a table (aih)', is_binary=True, optional=True) self.add_composite_file('shapefile.atx', description='Attribute index for the dbf file (atx)', is_binary=True, optional=True) self.add_composite_file('shapefile.ixs', description='Geocoding index (ixs)', is_binary=True, optional=True) self.add_composite_file('shapefile.mxs', description='Geocoding index in ODB format (mxs)', is_binary=True, optional=True) self.add_composite_file('shapefile.shp.xml', description='Geospatial metadata in XML format (xml)', is_binary=False, optional=True)
def __init__(self, **kwd): Binary.__init__(self, **kwd)
def __init__(self, **kwd): """Initialize binary datatype""" Binary.__init__(self, **kwd)
def __init__(self, **kwd): Binary.__init__(self, **kwd) self.add_composite_file('analysis.baf', description='analysis.baf file.', optional='False', is_binary=True) self.add_composite_file('analysis.baf_idx', description='analysis.baf file.', optional='False', is_binary=True) self.add_composite_file('analysis.baf_xtr', description='analysis.baf file.', optional='False', is_binary=True) self.add_composite_file('analysis.content', description='analysis.content file.', optional='False', is_binary=True) self.add_composite_file( 'analysis.0.DataAnalysis.method', description='analysis.0.DataAnalysis.method file.', optional='False', is_binary=True) self.add_composite_file('analysis.0.result_c', description='analysis.0.result_c file.', optional='False', is_binary=True) self.add_composite_file('calib.bin', description='calib.bin file.', optional='False', is_binary=True) self.add_composite_file( 'desktop.ini', description='desktop.ini file that contains some metadata.', optional='True', is_binary=False) self.add_composite_file('ms-waters-pda.hss', description='ms-waters-pda.hss file.', optional='False', is_binary=False) self.add_composite_file('*.hdx', description='any .hdx file.', optional='False', is_binary=True) self.add_composite_file('*.u2', description='any .u2 file.', optional='False', is_binary=True) self.add_composite_file('*.und', description='any .und file.', optional='False', is_binary=True) self.add_composite_file('*.m', description='any .m folder.', optional='False', is_binary=True) self.add_composite_file('*.m/DataAnalysis.Method', description='DataAnalysis.Method file.', optional='False', is_binary=True) self.add_composite_file('*.m/desktop.ini', description='*.m/desktop.ini file.', optional='True', is_binary=False) self.add_composite_file('*.m/hystar.method', description='*.m/hystar.method file.', optional='True', is_binary=True) self.add_composite_file( '*.m/microTOFQAcquisition.method', description='*.m/microTOFQAcquisition.method file.', optional='False', is_binary=True) self.add_composite_file('*.m/submethods.xml', description='*.m/submethods.xml file.', optional='False', is_binary=True) self.add_composite_file('*.mcf', description='any .mcf file.', optional='False', is_binary=True) self.add_composite_file('*.mcf_idx', description='any .mcf_idx file.', optional='False', is_binary=True) self.add_composite_file('Storage.mcf_idx', description='Storage.mcf_idx file.', optional='False', is_binary=True) self.add_composite_file( 'SampleInfo.xml', description='SampleInfo.xml file that contains some metadata.', optional='False', is_binary=False) self.add_composite_file('NuGenesisTemplate.txt', description='NuGenesisTemplate.txt file.', optional='True', is_binary=False) self.add_composite_file('LCParms.txt', description='LCParms.txt file.', optional='False', is_binary=False) self.add_composite_file('HS_columns.xmc', description='HS_columns.xmc file.', optional='False', is_binary=True) self.add_composite_file('BackgroundLineNeg.ami', description='BackgroundLineNeg.ami file.', optional='True', is_binary=True) self.add_composite_file('BackgroundUV.ami', description='BackgroundUV.ami file.', optional='True', is_binary=True) self.add_composite_file('Calibrator.ami', description='Calibrator.ami file.', optional='False', is_binary=True) self.add_composite_file('DensViewNeg.ami', description='DensViewNeg.ami file.', optional='True', is_binary=True) self.add_composite_file('DensViewNegBgnd.ami', description='DensViewNegBgnd.ami file.', optional='True', is_binary=True)
def __init__(self, **kwd): Binary.__init__(self, **kwd) log.info('Creating cummeRbund CuffDataDB')