def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('blastdb.nhr',
is_binary=True) # sequence headers
self.add_composite_file('blastdb.nin', is_binary=True) # index file
self.add_composite_file('blastdb.nsq',
is_binary=True) # nucleotide sequences
# alias ( -gi_mask option of makeblastdb)
self.add_composite_file('blastdb.nal', is_binary=False, optional=True)
# sorted sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file('blastdb.nhd', is_binary=True, optional=True)
# index of sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file('blastdb.nhi', is_binary=True, optional=True)
# sorted GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file('blastdb.nnd', is_binary=True, optional=True)
# index of GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file('blastdb.nni', is_binary=True, optional=True)
# OID->GI lookup file ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nog', is_binary=True, optional=True)
# sorted sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nsd', is_binary=True, optional=True)
# index of sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nsi', is_binary=True, optional=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('blastdb.nhr', is_binary=True) # sequence headers
self.add_composite_file('blastdb.nin', is_binary=True) # index file
self.add_composite_file('blastdb.nsq', is_binary=True) # nucleotide sequences
# alias ( -gi_mask option of makeblastdb)
self.add_composite_file('blastdb.nal', is_binary=False, optional=True)
# sorted sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file('blastdb.nhd', is_binary=True, optional=True)
# index of sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file('blastdb.nhi', is_binary=True, optional=True)
# sorted GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file('blastdb.nnd', is_binary=True, optional=True)
# index of GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file('blastdb.nni', is_binary=True, optional=True)
# OID->GI lookup file ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nog', is_binary=True, optional=True)
# sorted sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nsd', is_binary=True, optional=True)
# index of sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nsi', is_binary=True, optional=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('neostore', is_binary=True)
self.add_composite_file('neostore.id', is_binary=True)
self.add_composite_file('neostore.counts.db.a', is_binary=True)
self.add_composite_file('neostore.counts.db.b', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db.id', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db.names', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db.names.id', is_binary=True)
self.add_composite_file('neostore.nodestore.db', is_binary=True)
self.add_composite_file('neostore.nodestore.db.id', is_binary=True)
self.add_composite_file('neostore.nodestore.db.labels', is_binary=True)
self.add_composite_file('neostore.nodestore.db.labels.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db', is_binary=True)
self.add_composite_file('neostore.propertystore.db.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.arrays', is_binary=True)
self.add_composite_file('neostore.propertystore.db.arrays.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index.keys', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index.keys.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.strings', is_binary=True)
self.add_composite_file('neostore.propertystore.db.strings.id', is_binary=True)
self.add_composite_file('neostore.relationshipgroupstore.db', is_binary=True)
self.add_composite_file('neostore.relationshipgroupstore.db.id', is_binary=True)
self.add_composite_file('neostore.relationshipstore.db', is_binary=True)
self.add_composite_file('neostore.relationshipstore.db.id', is_binary=True)
self.add_composite_file('neostore.relationshiptypestore.db.names', is_binary=True)
self.add_composite_file('neostore.relationshiptypestore.db.names.id', is_binary=True)
self.add_composite_file('neostore.schemastore.db', is_binary=True)
self.add_composite_file('neostore.schemastore.db.id', is_binary=True)
self.add_composite_file('neostore.transaction.db.0', is_binary=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('neostore', is_binary=True)
self.add_composite_file('neostore.id', is_binary=True)
self.add_composite_file('neostore.counts.db.a', is_binary=True)
self.add_composite_file('neostore.counts.db.b', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db.id', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db.names', is_binary=True)
self.add_composite_file('neostore.labeltokenstore.db.names.id', is_binary=True)
self.add_composite_file('neostore.nodestore.db', is_binary=True)
self.add_composite_file('neostore.nodestore.db.id', is_binary=True)
self.add_composite_file('neostore.nodestore.db.labels', is_binary=True)
self.add_composite_file('neostore.nodestore.db.labels.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db', is_binary=True)
self.add_composite_file('neostore.propertystore.db.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.arrays', is_binary=True)
self.add_composite_file('neostore.propertystore.db.arrays.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index.keys', is_binary=True)
self.add_composite_file('neostore.propertystore.db.index.keys.id', is_binary=True)
self.add_composite_file('neostore.propertystore.db.strings', is_binary=True)
self.add_composite_file('neostore.propertystore.db.strings.id', is_binary=True)
self.add_composite_file('neostore.relationshipgroupstore.db', is_binary=True)
self.add_composite_file('neostore.relationshipgroupstore.db.id', is_binary=True)
self.add_composite_file('neostore.relationshipstore.db', is_binary=True)
self.add_composite_file('neostore.relationshipstore.db.id', is_binary=True)
self.add_composite_file('neostore.relationshiptypestore.db.names', is_binary=True)
self.add_composite_file('neostore.relationshiptypestore.db.names.id', is_binary=True)
self.add_composite_file('neostore.schemastore.db', is_binary=True)
self.add_composite_file('neostore.schemastore.db.id', is_binary=True)
self.add_composite_file('neostore.transaction.db.0', is_binary=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('blastdb.phr', is_binary=True)
self.add_composite_file('blastdb.pin', is_binary=True)
self.add_composite_file('blastdb.psq', is_binary=True)
self.add_composite_file('blastdb.freq', is_binary=True, optional=True)
self.add_composite_file('blastdb.loo', is_binary=True, optional=True)
self.add_composite_file('blastdb.psd', is_binary=True, optional=True)
self.add_composite_file('blastdb.psi', is_binary=True, optional=True)
self.add_composite_file('blastdb.rps', is_binary=True, optional=True)
self.add_composite_file('blastdb.aux', is_binary=True, optional=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('blastdb.phr', is_binary=True)
self.add_composite_file('blastdb.pin', is_binary=True)
self.add_composite_file('blastdb.psq', is_binary=True)
self.add_composite_file('blastdb.freq', is_binary=True, optional=True)
self.add_composite_file('blastdb.loo', is_binary=True, optional=True)
self.add_composite_file('blastdb.psd', is_binary=True, optional=True)
self.add_composite_file('blastdb.psi', is_binary=True, optional=True)
self.add_composite_file('blastdb.rps', is_binary=True, optional=True)
self.add_composite_file('blastdb.aux', is_binary=True, optional=True)
def __init__(self, **kwd):
"""Construct object from input files."""
Data.__init__(self, **kwd)
self.add_composite_file(
'se.rds',
is_binary=True,
description="Summarized experiment RDS object",
)
self.add_composite_file(
'assays.h5',
is_binary=True,
description="Summarized experiment data array",
)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
# Component file comments are as in BlastNucDb except where noted
self.add_composite_file('blastdb.phr', is_binary=True)
self.add_composite_file('blastdb.pin', is_binary=True)
self.add_composite_file('blastdb.psq', is_binary=True) # protein sequences
self.add_composite_file('blastdb.phd', is_binary=True, optional=True)
self.add_composite_file('blastdb.phi', is_binary=True, optional=True)
self.add_composite_file('blastdb.pnd', is_binary=True, optional=True)
self.add_composite_file('blastdb.pni', is_binary=True, optional=True)
self.add_composite_file('blastdb.pog', is_binary=True, optional=True)
self.add_composite_file('blastdb.psd', is_binary=True, optional=True)
self.add_composite_file('blastdb.psi', is_binary=True, optional=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
# Component file comments are as in BlastNucDb except where noted
self.add_composite_file('blastdb.phr', is_binary=True)
self.add_composite_file('blastdb.pin', is_binary=True)
self.add_composite_file('blastdb.psq',
is_binary=True) # protein sequences
self.add_composite_file('blastdb.phd', is_binary=True, optional=True)
self.add_composite_file('blastdb.phi', is_binary=True, optional=True)
self.add_composite_file('blastdb.pnd', is_binary=True, optional=True)
self.add_composite_file('blastdb.pni', is_binary=True, optional=True)
self.add_composite_file('blastdb.pog', is_binary=True, optional=True)
self.add_composite_file('blastdb.psd', is_binary=True, optional=True)
self.add_composite_file('blastdb.psi', is_binary=True, optional=True)
def display_data(self,
trans,
data,
preview=False,
filename=None,
to_ext=None,
size=None,
offset=None,
**kwd):
"""Documented as an old display method, but still gets called via tests etc
This allows us to format the data shown in the central pane via the "eye" icon.
"""
if filename is not None and filename != "index":
#Change nothing - important for the unit tests to access child files:
return Data.display_data(self, trans, data, preview, filename,
to_ext, size, offset, **kwd)
if self.file_ext == "blastdbn":
title = "This is a nucleotide BLAST database"
elif self.file_ext == "blastdbp":
title = "This is a protein BLAST database"
elif self.file_ext == "blastdbd":
title = "This is a domain BLAST database"
else:
#Error?
title = "This is a BLAST database."
msg = ""
try:
#Try to use any text recorded in the dummy index file:
handle = open(data.file_name, "rU")
msg = handle.read().strip()
handle.close()
except Exception, err:
#msg = str(err)
pass
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('blastdb.nhr', is_binary=True) # sequence headers
self.add_composite_file('blastdb.nin', is_binary=True) # index file
self.add_composite_file('blastdb.nsq', is_binary=True) # nucleotide sequences
self.add_composite_file('blastdb.nal', is_binary=False, optional=True) # alias ( -gi_mask option of makeblastdb)
self.add_composite_file('blastdb.nhd', is_binary=True, optional=True) # sorted sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file('blastdb.nhi', is_binary=True, optional=True) # index of sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file('blastdb.nnd', is_binary=True, optional=True) # sorted GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file('blastdb.nni', is_binary=True, optional=True) # index of GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file('blastdb.nog', is_binary=True, optional=True) # OID->GI lookup file ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nsd', is_binary=True, optional=True) # sorted sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file('blastdb.nsi', is_binary=True, optional=True) # index of sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
# self.add_composite_file('blastdb.00.idx', is_binary=True, optional=True) # first volume of the MegaBLAST index generated by makembindex
# The previous line should be repeated for each index volume, with filename extensions like '.01.idx', '.02.idx', etc.
self.add_composite_file('blastdb.shd', is_binary=True, optional=True) # MegaBLAST index superheader (-old_style_index false option of makembindex)
def display_data(self, trans, data, preview=False, filename=None,
to_ext=None, size=None, offset=None, **kwd):
"""Documented as an old display method, but still gets called via tests etc
This allows us to format the data shown in the central pane via the "eye" icon.
"""
if filename is not None and filename != "index":
# Change nothing - important for the unit tests to access child files:
return Data.display_data(self, trans, data, preview, filename,
to_ext, size, offset, **kwd)
if self.file_ext == "blastdbn":
title = "This is a nucleotide BLAST database"
elif self.file_ext == "blastdbp":
title = "This is a protein BLAST database"
elif self.file_ext == "blastdbd":
title = "This is a domain BLAST database"
else:
# Error?
title = "This is a BLAST database."
msg = ""
try:
# Try to use any text recorded in the dummy index file:
handle = open(data.file_name, "rU")
msg = handle.read().strip()
handle.close()
except Exception:
pass
if not msg:
msg = title
# Galaxy assumes HTML for the display of composite datatypes,
return "<html><head><title>%s</title></head><body><pre>%s</pre></body></html>" % (title, msg)
def display_data(self, trans, data, preview=False, filename=None,
to_ext=None, size=None, offset=None, **kwd):
"""Documented as an old display method, but still gets called via tests etc
This allows us to format the data shown in the central pane via the "eye" icon.
"""
if filename is not None and filename != "index":
#Change nothing - important for the unit tests to access child files:
return Data.display_data(self, trans, data, preview, filename,
to_ext, size, offset, **kwd)
if self.file_ext == "blastdbn":
title = "This is a nucleotide BLAST database"
elif self.file_ext =="blastdbp":
title = "This is a protein BLAST database"
else:
#Error?
title = "This is a BLAST database."
msg = ""
try:
#Try to use any text recorded in the dummy index file:
handle = open(data.file_name, "rU")
msg = handle.read().strip()
handle.close()
except Exception, err:
#msg = str(err)
pass
def test_is_datatype_change_allowed():
# By default is_datatype_change_allowed() is True if the datatype is not composite
assert Data.is_datatype_change_allowed()
assert Bed.is_datatype_change_allowed()
# AnvioStructureDB is a subclass of a composite datatype
assert AnvioStructureDB.is_datatype_change_allowed() is False
# BedStrict explictly disallows datatype change with `allow_datatype_change = False`
assert BedStrict.is_datatype_change_allowed() is False
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('lastdb.ssp', is_binary=True)
self.add_composite_file('lastdb.tis', is_binary=True)
self.add_composite_file('lastdb.sds', is_binary=True)
self.add_composite_file('lastdb.suf', is_binary=True)
self.add_composite_file('lastdb.des', is_binary=True)
self.add_composite_file('lastdb.bck', is_binary=True)
self.add_composite_file('lastdb.prj', is_binary=False)
## These next two are my own concotions
# a map from id or accession to taxid
self.add_composite_file('lastdb.tax', is_binary=False, optional=True)
# a map form id or accession to description
self.add_composite_file('lastdb.ids', is_binary=False, optional=True)
## These are for multi-volumen DBs. I'm not sure they are necessary...
self.add_composite_file('lastdb0.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb0.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb0.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb0.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb0.des', is_binary=True, optional=True)
self.add_composite_file('lastdb0.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb0.prj', is_binary=False, optional=True)
self.add_composite_file('lastdb1.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb1.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb1.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb1.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb1.des', is_binary=True, optional=True)
self.add_composite_file('lastdb1.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb1.prj', is_binary=False, optional=True)
self.add_composite_file('lastdb2.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb2.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb2.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb2.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb2.des', is_binary=True, optional=True)
self.add_composite_file('lastdb2.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb2.prj', is_binary=False, optional=True)
self.add_composite_file('lastdb3.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb3.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb3.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb3.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb3.des', is_binary=True, optional=True)
self.add_composite_file('lastdb3.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb3.prj', is_binary=False, optional=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('lastdb.ssp', is_binary=True)
self.add_composite_file('lastdb.tis', is_binary=True)
self.add_composite_file('lastdb.sds', is_binary=True)
self.add_composite_file('lastdb.suf', is_binary=True)
self.add_composite_file('lastdb.des', is_binary=True)
self.add_composite_file('lastdb.bck', is_binary=True)
self.add_composite_file('lastdb.prj', is_binary=False)
self.add_composite_file('lastdb0.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb0.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb0.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb0.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb0.des', is_binary=True, optional=True)
self.add_composite_file('lastdb0.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb0.prj', is_binary=False, optional=True)
self.add_composite_file('lastdb1.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb1.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb1.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb1.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb1.des', is_binary=True, optional=True)
self.add_composite_file('lastdb1.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb1.prj', is_binary=False, optional=True)
self.add_composite_file('lastdb2.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb2.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb2.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb2.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb2.des', is_binary=True, optional=True)
self.add_composite_file('lastdb2.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb2.prj', is_binary=False, optional=True)
self.add_composite_file('lastdb3.ssp', is_binary=True, optional=True)
self.add_composite_file('lastdb3.tis', is_binary=True, optional=True)
self.add_composite_file('lastdb3.sds', is_binary=True, optional=True)
self.add_composite_file('lastdb3.suf', is_binary=True, optional=True)
self.add_composite_file('lastdb3.des', is_binary=True, optional=True)
self.add_composite_file('lastdb3.bck', is_binary=True, optional=True)
self.add_composite_file('lastdb3.prj', is_binary=False, optional=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('blastdb.nhr',
is_binary=True) # sequence headers
self.add_composite_file('blastdb.nin', is_binary=True) # index file
self.add_composite_file('blastdb.nsq',
is_binary=True) # nucleotide sequences
self.add_composite_file(
'blastdb.nal', is_binary=False,
optional=True) # alias ( -gi_mask option of makeblastdb)
self.add_composite_file(
'blastdb.nhd', is_binary=True, optional=True
) # sorted sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file(
'blastdb.nhi', is_binary=True, optional=True
) # index of sequence hash values ( -hash_index option of makeblastdb)
self.add_composite_file(
'blastdb.nnd', is_binary=True, optional=True
) # sorted GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file(
'blastdb.nni', is_binary=True, optional=True
) # index of GI values ( -parse_seqids option of makeblastdb and gi present in the description lines)
self.add_composite_file(
'blastdb.nog', is_binary=True, optional=True
) # OID->GI lookup file ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file(
'blastdb.nsd', is_binary=True, optional=True
) # sorted sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
self.add_composite_file(
'blastdb.nsi', is_binary=True, optional=True
) # index of sequence accession values ( -hash_index or -parse_seqids option of makeblastdb)
# self.add_composite_file('blastdb.00.idx', is_binary=True, optional=True) # first volume of the MegaBLAST index generated by makembindex
# The previous line should be repeated for each index volume, with filename extensions like '.01.idx', '.02.idx', etc.
self.add_composite_file(
'blastdb.shd', is_binary=True, optional=True
) # MegaBLAST index superheader (-old_style_index false option of makembindex)
def display_data(self, trans, data, preview=False, filename=None,
to_ext=None, size=None, offset=None, **kwd):
"""Documented as an old display method, but still gets called via tests etc
This allows us to format the data shown in the central pane via the "eye" icon.
"""
if filename is not None and filename != "index":
# Change nothing - important for the unit tests to access child files:
return Data.display_data(self, trans, data, preview, filename,
to_ext, size, offset, **kwd)
if self.file_ext == "ctbreport":
title = "This is a CtbReports database"
msg = ""
try:
# Try to use any text recorded in the dummy index file:
handle = open(data.file_name, "rU")
msg = handle.read().strip()
handle.close()
except Exception:
pass
if not msg:
msg = title
# Galaxy assumes HTML for the display of composite datatypes,
return "<html><head><title>%s</title></head><body><pre>%s</pre></body></html>" % (title, msg)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('%s.zip',
description='neostore zip',
substitute_name_with_metadata='reference_name',
is_binary=True)
def init_meta(self, dataset, copy_from=None):
"""Override parent init metadata."""
Data.init_meta(self, dataset, copy_from=copy_from)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('neo4j/', is_binary=True)
self.add_composite_file('jbrowser/', is_binary=True)
def __init__(self, **kwd):
Data.__init__(self, **kwd)
self.add_composite_file('%s.zip', description='neostore zip', substitute_name_with_metadata='reference_name',
is_binary=True)
