def get_object(trans,
id,
class_name,
check_ownership=False,
check_accessible=False,
deleted=None):
"""
Convenience method to get a model object with the specified checks. This is
a generic method for dealing with objects uniformly from the older
controller mixin code - however whenever possible the managers for a
particular model should be used to load objects.
"""
decoded_id = decode_id(trans.app, id)
try:
item_class = get_class(class_name)
assert item_class is not None
item = trans.sa_session.query(item_class).get(decoded_id)
assert item is not None
except Exception:
log.exception("Invalid %s id ( %s ) specified." % (class_name, id))
raise exceptions.MessageException("Invalid %s id ( %s ) specified" %
(class_name, id),
type="error")
if check_ownership or check_accessible:
security_check(trans, item, check_ownership, check_accessible)
if deleted is True and not item.deleted:
raise exceptions.ItemDeletionException(
'%s "%s" is not deleted' % (class_name, getattr(item, 'name', id)),
type="warning")
elif deleted is False and item.deleted:
raise exceptions.ItemDeletionException(
'%s "%s" is deleted' % (class_name, getattr(item, 'name', id)),
type="warning")
return item
def get(self,
trans,
unencoded_id,
check_ownership=True,
check_accessible=True,
deleted=None):
"""
Get a History from the database by id, verifying ownership.
"""
# this is a replacement for UsesHistoryMixin because mixins are a bad soln/structure
history = trans.sa_session.query(
trans.app.model.History).get(unencoded_id)
if history is None:
raise exceptions.ObjectNotFound()
if deleted is True and not history.deleted:
raise exceptions.ItemDeletionException(
'History "%s" is not deleted' % (history.name), type="error")
elif deleted is False and history.deleted:
raise exceptions.ItemDeletionException('History "%s" is deleted' %
(history.name),
type="error")
history = self.secure(trans, history, check_ownership,
check_accessible)
return history
def undelete(self, user, flush=True):
"""Remove the deleted flag for the given user."""
if not self.app.config.allow_user_deletion:
raise exceptions.ConfigDoesNotAllowException('The configuration of this Galaxy instance does not allow admins to undelete users.')
if user.purged:
raise exceptions.ItemDeletionException('Purged user cannot be undeleted.')
super(UserManager, self).undelete(user, flush=flush)
def __api_import_shared_workflow(self, trans, workflow_id, payload, **kwd):
try:
stored_workflow = self.get_stored_workflow(trans, workflow_id, check_ownership=False)
except Exception:
raise exceptions.ObjectNotFound("Malformed workflow id ( %s ) specified." % workflow_id)
if stored_workflow.importable is False:
raise exceptions.ItemAccessibilityException('The owner of this workflow has disabled imports via this link.')
elif stored_workflow.deleted:
raise exceptions.ItemDeletionException("You can't import this workflow because it has been deleted.")
imported_workflow = self._import_shared_workflow(trans, stored_workflow)
item = imported_workflow.to_dict(value_mapper={'id': trans.security.encode_id})
encoded_id = trans.security.encode_id(imported_workflow.id)
item['url'] = url_for('workflow', id=encoded_id)
return item