Python Bunch.toolbox_filter_base_modules Examples

Example #1

File: test_toolbox_filters.py Project: ImmPortDB/immport-galaxy

def filter_factory(config_dict=None):
    if config_dict is None:
        config_dict = dict(
            tool_filters=["filtermod:filter_tool"],
            tool_section_filters=["filtermod:filter_section"],
            tool_label_filters=["filtermod:filter_label_1", "filtermod:filter_label_2"],
        )
    config = Bunch(**config_dict)
    config.toolbox_filter_base_modules = "galaxy.tools.filters,unit.tools.filter_modules"
    app = Bunch(config=config)
    toolbox = Bunch(app=app)
    return FilterFactory(toolbox)

Example #2

File: test_toolbox_filters.py Project: avengerpb/Galaxyondocker

def filter_factory(config_dict=None):
    if config_dict is None:
        config_dict = dict(
            tool_filters=["filtermod:filter_tool"],
            tool_section_filters=["filtermod:filter_section"],
            tool_label_filters=["filtermod:filter_label_1", "filtermod:filter_label_2"],
        )
    config = Bunch( **config_dict )
    config.toolbox_filter_base_modules = "galaxy.tools.filters,tools.filter_modules"
    app = Bunch(config=config)
    toolbox = Bunch(app=app)
    return FilterFactory(toolbox)

Example #3

def filter_factory(config_dict=None):
    if config_dict is None:
        config_dict = dict(
            tool_filters=["filtermod:filter_tool"],
            tool_section_filters=["filtermod:filter_section"],
            tool_label_filters=[
                "filtermod:filter_label_1", "filtermod:filter_label_2"
            ],
        )
    config = Bunch(**config_dict)
    parent_module_name = '.'.join(__name__.split('.')[:-1])
    config.toolbox_filter_base_modules = f"galaxy.tool_util.toolbox.filters,{parent_module_name}.filter_modules"
    app = Bunch(config=config)
    toolbox = Bunch(app=app)
    return FilterFactory(toolbox)