def reload_toolbox(app, **kwargs):
reload_timer = util.ExecutionTimer()
log.debug("Executing toolbox reload on '%s'", app.config.server_name)
reload_count = app.toolbox._reload_count
if hasattr(app, 'tool_cache'):
app.tool_cache.cleanup()
_get_new_toolbox(app)
app.toolbox._reload_count = reload_count + 1
send_local_control_task(app, 'rebuild_toolbox_search_index')
log.debug("Toolbox reload %s", reload_timer)
def reload_job_rules(app, **kwargs):
reload_timer = util.ExecutionTimer()
for module in job_rule_modules(app):
rules_module_name = module.__name__
for name, module in sys.modules.items():
if ((name == rules_module_name or name.startswith(rules_module_name + '.'))
and ismodule(module)):
log.debug("Reloading job rules module: %s", name)
reload_module(module)
log.debug("Job rules reloaded %s", reload_timer)
def reload_job_rules(app, **kwargs):
reload_timer = util.ExecutionTimer()
default = 'galaxy.jobs.rules'
rules_module_name = default
if app.job_config.dynamic_params is not None:
rules_module_name = app.job_config.dynamic_params.get(
'rules_module', default)
for name, module in sys.modules.items():
if (name == rules_module_name or
name.startswith(rules_module_name + '.')) and ismodule(module):
log.debug("Reloading job rules module: %s", name)
reload_module(module)
log.debug("Job rules reloaded %s", reload_timer)
def reload_data_managers(app, **kwargs):
reload_timer = util.ExecutionTimer()
from galaxy.tools.data_manager.manager import DataManagers
log.debug("Executing data managers reload on '%s'", app.config.server_name)
app._configure_tool_data_tables(from_shed_config=False)
reload_tool_data_tables(app)
reload_count = app.data_managers._reload_count
app.data_managers = DataManagers(app)
app.data_managers._reload_count = reload_count + 1
if hasattr(app, 'tool_cache'):
app.tool_cache.reset_status()
if hasattr(app, 'watchers'):
app.watchers.update_watch_data_table_paths()
log.debug("Data managers reloaded %s", reload_timer)
def reload_data_managers(app, **kwargs):
reload_timer = util.ExecutionTimer()
from galaxy.tools.data_manager.manager import DataManagers
from galaxy.tools.toolbox.lineages.tool_shed import ToolVersionCache
log.debug("Executing data managers reload on '%s'", app.config.server_name)
if hasattr(app, 'tool_shed_repository_cache'):
app.tool_shed_repository_cache.rebuild()
app._configure_tool_data_tables(from_shed_config=False)
reload_tool_data_tables(app)
reload_count = app.data_managers._reload_count
app.data_managers = DataManagers(app)
app.data_managers._reload_count = reload_count + 1
app.tool_version_cache = ToolVersionCache(app)
if hasattr(app, 'tool_cache'):
app.tool_cache.reset_status()
log.debug("Data managers reloaded %s", reload_timer)
