def onedfit(self, usemoments=True, annotate=True, vheight=True, height=0, negamp=None,**kwargs):
self.ngauss = 1
self.auto = True
self.setfitspec()
if usemoments: # this can be done within gaussfit but I want to save them
self.guesses = gaussfitter.onedmoments(
self.specplotter.vind[self.gx1:self.gx2],
self.spectofit[self.gx1:self.gx2],
vheight=vheight,negamp=negamp,**kwargs)
if vheight is False: self.guesses = [height]+self.guesses
else:
if negamp: self.guesses = [height,-1,0,1]
else: self.guesses = [height,1,0,1]
mpp,model,mpperr,chi2 = gaussfitter.onedgaussfit(
self.specplotter.vind[self.gx1:self.gx2],
self.spectofit[self.gx1:self.gx2],
err=self.errspec[self.gx1:self.gx2],
vheight=vheight,
params=self.guesses,
**self.fitkwargs)
self.chi2 = chi2
self.dof = self.gx2-self.gx1-self.ngauss*3-vheight
if vheight:
self.specplotter.baseline.baselinepars = mpp[:1] # first item in list form
self.model = model - mpp[0]
else: self.model = model
self.residuals = self.spectofit[self.gx1:self.gx2] - self.model
self.modelpars = mpp[1:].tolist()
self.modelerrs = mpperr[1:].tolist()
self.modelplot = self.specplotter.axis.plot(
self.specplotter.vind[self.gx1:self.gx2],
self.model+self.specplotter.offset, color=self.fitcolor, linewidth=0.5)
if annotate:
self.annotate()
if vheight: self.specplotter.baseline.annotate()
def onedfit(self, usemoments=True, annotate=True, vheight=True, height=0, negamp=None,**kwargs):
self.ngauss = 1
self.auto = True
self.setfitspec()
if usemoments: # this can be done within gaussfit but I want to save them
self.guesses = gaussfitter.onedmoments(
self.specplotter.vind[self.gx1:self.gx2],
self.spectofit[self.gx1:self.gx2],
vheight=vheight,negamp=negamp,**kwargs)
if vheight is False: self.guesses = [height]+self.guesses
else:
if negamp: self.guesses = [height,-1,0,1]
else: self.guesses = [height,1,0,1]
mpp,model,mpperr,chi2 = gaussfitter.onedgaussfit(
self.specplotter.vind[self.gx1:self.gx2],
self.spectofit[self.gx1:self.gx2],
err=self.errspec[self.gx1:self.gx2],
vheight=vheight,
params=self.guesses,
**self.fitkwargs)
self.chi2 = chi2
self.dof = self.gx2-self.gx1-self.ngauss*3-vheight
if vheight:
self.specplotter.baseline.baselinepars = mpp[:1] # first item in list form
self.model = model - mpp[0]
else: self.model = model
self.residuals = self.spectofit[self.gx1:self.gx2] - self.model
self.modelpars = mpp[1:].tolist()
self.modelerrs = mpperr[1:].tolist()
self.modelplot = self.specplotter.axis.plot(
self.specplotter.vind[self.gx1:self.gx2],
self.model+self.specplotter.offset, color=self.fitcolor, linewidth=0.5)
if annotate:
self.annotate()
if vheight: self.specplotter.baseline.annotate()
def selectregion(self,event):
if self.nclicks_b1 == 0:
self.gx1 = argmin(abs(event.xdata-self.specplotter.vind))
self.nclicks_b1 += 1
elif self.nclicks_b1 == 1:
self.gx2 = argmin(abs(event.xdata-self.specplotter.vind))
self.nclicks_b1 -= 1
if self.gx1 > self.gx2: self.gx1,self.gx2 = self.gx2,self.gx1
if abs(self.gx1-self.gx2) > 3: # can't fit w/ fewer data than pars
self.fitregion = self.specplotter.axis.plot(
self.specplotter.vind[self.gx1:self.gx2],
self.specplotter.spectrum[self.gx1:self.gx2]+self.specplotter.offset,
drawstyle='steps-mid',
color='c')
if self.guesses == []:
self.guesses = gaussfitter.onedmoments(
self.specplotter.vind[self.gx1:self.gx2],
self.spectofit[self.gx1:self.gx2],
vheight=0)
self.ngauss = 1
self.auto = True
else:
print "Fitting region is too small (channels %i:%i). Try again." % (self.gx1,self.gx2)
def selectregion(self,event):
if self.nclicks_b1 == 0:
self.gx1 = argmin(abs(event.xdata-self.specplotter.vind))
self.nclicks_b1 += 1
elif self.nclicks_b1 == 1:
self.gx2 = argmin(abs(event.xdata-self.specplotter.vind))
self.nclicks_b1 -= 1
if self.gx1 > self.gx2: self.gx1,self.gx2 = self.gx2,self.gx1
if abs(self.gx1-self.gx2) > 3: # can't fit w/ fewer data than pars
self.fitregion = self.specplotter.axis.plot(
self.specplotter.vind[self.gx1:self.gx2],
self.specplotter.spectrum[self.gx1:self.gx2]+self.specplotter.offset,
drawstyle='steps-mid',
color='c')
if self.guesses == []:
self.guesses = gaussfitter.onedmoments(
self.specplotter.vind[self.gx1:self.gx2],
self.spectofit[self.gx1:self.gx2],
vheight=0)
self.ngauss = 1
self.auto = True
else:
print("Fitting region is too small (channels %i:%i). Try again." % (self.gx1,self.gx2))