Python _prepare_index_parameter Examples

Example #1

File: parameter_converter_tests.py Project: MarcosFernandez/gemtools-cnv

def test_index_parameter():
    idx = testfiles['genome.gem']
    dir = os.path.dirname(idx)
    def c(suf):
        return "%s/genome%s" %(dir, suf)
    assert gem._prepare_index_parameter(c(".gem")) == c(".gem")
    assert gem._prepare_index_parameter(c("")) == c(".gem")
    assert gem._prepare_index_parameter(c(""), False) == c("")
    assert gem._prepare_index_parameter(c(".gem"), False) == c("")

Example #2

File: parameter_converter_tests.py Project: yesimon/gemtools

def test_index_parameter():
    idx = testfiles['genome.gem']
    dir = os.path.dirname(idx)

    def c(suf):
        return "%s/genome%s" % (dir, suf)

    assert gem._prepare_index_parameter(c(".gem")) == c(".gem")
    assert gem._prepare_index_parameter(c("")) == c(".gem")
    assert gem._prepare_index_parameter(c(""), False) == c("")
    assert gem._prepare_index_parameter(c(".gem"), False) == c("")

Example #3

File: parameter_converter_tests.py Project: MarcosFernandez/gemtools-cnv

def test_index_parameter_checks_file():
    gem._prepare_index_parameter("unknown_index", False)

Example #4

File: parameter_converter_tests.py Project: yesimon/gemtools

def test_index_parameter_checks_file():
    gem._prepare_index_parameter("unknown_index", False)