Python GeminiLoader.store_sample_gt_counts Examples

Example #1

def load_singlecore(args):
    # create a new gemini loader and populate
    # the gemini db and files from the VCF
    l = GeminiLoader(args)
    l.populate_from_vcf()
    if not args.no_genotypes and not args.no_load_genotypes:
        l.store_sample_gt_counts()
    return l

Example #2

File: gemini_load.py Project: arq5x/gemini

def load_singlecore(args):
    # create a new gemini loader and populate
    # the gemini db and files from the VCF
    l = GeminiLoader(args)
    l.populate_from_vcf()
    if not args.no_genotypes and not args.no_load_genotypes:
        l.store_sample_gt_counts()
    return l