def get_genbank_binomial(self, binomial):
taxid = self.get_taxonID(binomial)
if taxid != "NA":
lineage = genbank.get_lineage(taxid)
genbank_binomial = " ".join([lineage['genus'], lineage['species']])
else:
lineage = "NA"
genbank_binomial = "NA"
log.debug("genbank_binomial is: '%s'" % genbank_binomial)
return genbank_binomial
def get_genbank_binomial(self, binomial):
taxid = self.get_taxonID(binomial)
if taxid != "NA":
lineage = genbank.get_lineage(taxid)
genbank_binomial = " ".join([lineage['genus'], lineage['species']])
else:
lineage = "NA"
genbank_binomial = "NA"
log.debug("genbank_binomial is: '%s'" % genbank_binomial)
return genbank_binomial
def set_genbank_name(self, name):
self.set_taxonID(name)
if self.taxid != "NA":
self.lineage = genbank.get_lineage(self.taxid)
self.genbank_binomial = " ".join([self.lineage['genus'],
self.lineage['species']])
else:
self.lineage = "NA"
self.genbank_binomial = "NA"
log.info("set genbank_binomial to: '%s'" %self.genbank_binomial)
def set_genbank_name(self, name):
self.set_taxonID(name)
if self.taxid != "NA":
self.lineage = genbank.get_lineage(self.taxid)
self.genbank_binomial = " ".join(
[self.lineage['genus'], self.lineage['species']])
else:
self.lineage = "NA"
self.genbank_binomial = "NA"
log.info("set genbank_binomial to: '%s'" % self.genbank_binomial)
