Python QueryHandler.search Examples

Example #1

File: test_ensembl_source.py Project: cancervariants/gene-normalization

    class QueryGetter:
        def __init__(self):
            self.query_handler = QueryHandler()

        def search(self, query_str, incl="ensembl"):
            resp = self.query_handler.search(query_str, keyed=True, incl=incl)
            return resp.source_matches[SourceName.ENSEMBL.value]

Example #2

File: test_hgnc_source.py Project: cancervariants/gene-normalization

    class QueryGetter:
        def __init__(self):
            self.query_handler = QueryHandler()

        def search(self, query_str, incl='hgnc'):
            resp = self.query_handler.search(query_str, keyed=True, incl=incl)
            return resp.source_matches[SourceName.HGNC]

Example #3

    class QueryGetter:
        def __init__(self):
            self.query_handler = QueryHandler()

        def search(self, query_str, keyed=False, incl='', excl=''):
            return self.query_handler.search(query_str=query_str,
                                             keyed=keyed,
                                             incl=incl,
                                             excl=excl)

        def normalize(self, query_str):
            return self.query_handler.normalize(query_str)