def expand(self,
data,
data_positive,
target_class,
quality_measure=conf.QUALITY_MEASURE):
random_object = random.sample(self.candidate_sequences_expand, 1)[0]
self.candidate_sequences_expand.remove(random_object)
if self.intent == None:
# for the root node, it is directly database sequences
sequence_children = sequence_mutable_to_immutable(random_object)
else:
sequence_children = sequence_mutable_to_immutable(
find_LCS(random_object, self.intent))
if sequence_children in self.node_hashmap:
child = self.node_hashmap[sequence_children]
child.parents.append(self)
self.children.append(child)
else:
child = Node(sequence_children,
self,
data,
data_positive,
target_class,
self.node_hashmap,
quality_measure=quality_measure)
self.node_hashmap[sequence_children] = child
return child
def test_is_subsequence():
a = ({1, 2}, {2, 3})
b = ({1, 2, 3}, {2, 4, 3})
c = ({1}, {2}, {2})
assert not is_subsequence(c, a)
assert is_subsequence(a, b)
a = [{1, 2}, {2, 3}]
b = [{1, 2, 3}, {1}, {2, 4, 3}]
assert is_subsequence(a, b)
a = [{1, 5, 2}, {2, 3}]
b = [{1, 2, 3}, {1}, {2, 4, 3}]
assert not is_subsequence(a, b)
a = [{1, 5, 2}, {2, 3}, {5}]
b = [{1, 5, 2}, {2, 4, 3}]
assert not is_subsequence(a, b)
a = [{1}, {2}]
b = [{1, 2, 3}, {1}, {2, 4, 3}]
assert is_subsequence(a, b)
assert not is_subsequence(b, a)
a = sequence_mutable_to_immutable(a)
b = sequence_mutable_to_immutable(b)
assert is_subsequence(a, b)
a = [{'1'}, {'2'}]
b = [{'1', '2', '3'}, {'1'}, {'2', '4', '3'}]
assert is_subsequence(a, b)
def misere(data, target_class, time_budget=conf.TIME_BUDGET, top_k=conf.TOP_K, iterations_limit=conf.ITERATIONS_NUMBER,
theta=conf.THETA, quality_measure=conf.QUALITY_MEASURE):
begin = datetime.datetime.utcnow()
time_budget = datetime.timedelta(seconds=time_budget)
sorted_patterns = PrioritySet(theta=theta)
bitset_slot_size = len(max(data, key=lambda x: len(x))) - 1
first_zero_mask = compute_first_zero_mask(len(data), bitset_slot_size)
last_ones_mask = compute_last_ones_mask(len(data), bitset_slot_size)
class_data_count = count_target_class_data(data, target_class)
itemsets_bitsets = {}
iterations_count = 0
while datetime.datetime.utcnow() - begin < time_budget and iterations_count < iterations_limit:
sequence = copy.deepcopy(random.choice(data))
sequence = sequence[1:]
ads = count_subsequences_number(sequence)
for i in range(int(math.log(ads))):
if iterations_count >= iterations_limit:
break
subsequence = copy.deepcopy(sequence)
# we remove z items randomly
seq_items_nb = len([i for j_set in subsequence for i in j_set])
z = random.randint(1, seq_items_nb - 1)
for _ in range(z):
chosen_itemset_i = random.randint(0, len(subsequence) - 1)
chosen_itemset = subsequence[chosen_itemset_i]
chosen_itemset.remove(random.sample(chosen_itemset, 1)[0])
if len(chosen_itemset) == 0:
subsequence.pop(chosen_itemset_i)
quality, _ = compute_quality_vertical(data, subsequence, target_class,
bitset_slot_size,
itemsets_bitsets, class_data_count,
first_zero_mask, last_ones_mask, quality_measure=quality_measure)
iterations_count += 1
sorted_patterns.add(sequence_mutable_to_immutable(subsequence),
quality)
return sorted_patterns.get_top_k_non_redundant(data, top_k)
def launch_mcts(data, target_class, time_budget=conf.TIME_BUDGET, top_k=conf.TOP_K, theta=conf.THETA,
iterations_limit=conf.ITERATIONS_NUMBER, quality_measure=conf.QUALITY_MEASURE):
begin = datetime.datetime.utcnow()
time_budget = datetime.timedelta(seconds=time_budget)
data_positive = filter_positive(data, target_class)
data = filter_empty_sequences(data)
node_hashmap = {}
root_node = Node(None, None, data, data_positive, target_class, node_hashmap)
node_hashmap[('.')] = root_node
sorted_patterns = PrioritySet(k=top_k, theta=theta)
iteration_count = 0
while datetime.datetime.utcnow() - begin <= time_budget and iteration_count < iterations_limit:
node_sel = select(root_node)
if node_sel == 'finished':
print('Finished')
break
node_expand = node_sel.expand(data, data_positive, target_class, quality_measure=quality_measure)
sorted_patterns.add(sequence_mutable_to_immutable(node_expand.intent), node_expand.quality)
sequence_reward, reward = roll_out(node_expand, data, target_class, quality_measure=quality_measure)
sorted_patterns.add(sequence_mutable_to_immutable(sequence_reward), reward)
update(node_expand, reward)
iteration_count += 1
# if iteration_count % int(iterations_limit * 0.1) == 0:
# print('{}%'.format(iteration_count / iterations_limit * 100))
print('Number iteration mcts: {}'.format(iteration_count))
return sorted_patterns.get_top_k_non_redundant(data, top_k)
def test_all_lcs():
seq1 = [{'a', 'b'}, {'e'}, {'c'}]
seq2 = [{'a'}, {'d'}, {'a', 'b'}, {'f'}, {'e'}]
lcs = find_LCS(seq1, seq2, all=True)
immu_lcs = sequence_mutable_to_immutable([{'a', 'b'}, {'e'}])
assert immu_lcs in lcs
seq1 = [{'a'}, {'a', 'b'}, {'e'}, {'c'}, {'b', 'd'}]
seq2 = [{'a'}, {'b', 'c', 'd'}, {'a', 'd'}]
lcs = find_LCS(seq1, seq2, all=True)
assert len(lcs) == 3
def jaccard_measure_misere(sequence1, sequence2, data):
intersection = 0
union = 0
for sequence in data:
sequence = sequence[1:]
sequence = sequence_mutable_to_immutable(sequence)
seq1 = False
seq2 = False
if is_subsequence(sequence1, sequence):
seq1 = True
if is_subsequence(sequence2, sequence):
seq2 = True
if seq1 or seq2:
union += 1
if seq1 and seq2:
intersection += 1
try:
return intersection / union
except ZeroDivisionError:
return 0
def optimize_pattern(patterns,
items,
data,
itemsets_memory,
target_class,
top_k,
sorted_patterns,
enable_i=True,
quality_measure=conf.QUALITY_MEASURE):
for pattern in patterns:
pattern_mutable = sequence_immutable_to_mutable(pattern[1])
optimized_pattern, optimized_quality = exploit_arm(
pattern_mutable,
pattern[0],
items,
data,
itemsets_memory,
target_class,
enable_i=enable_i,
quality_measure=quality_measure)
optimized_pattern = sequence_mutable_to_immutable(optimized_pattern)
sorted_patterns.add(optimized_pattern, optimized_quality)
return sorted_patterns.get_top_k_non_redundant(data, top_k)
def seq_scout(data,
target_class,
time_budget=conf.TIME_BUDGET,
top_k=conf.TOP_K,
enable_i=True,
vertical=True,
iterations_limit=conf.ITERATIONS_NUMBER,
theta=conf.THETA,
quality_measure=conf.QUALITY_MEASURE):
items = extract_items(data)
begin = datetime.datetime.utcnow()
time_budget = datetime.timedelta(seconds=time_budget)
data_target_class = filter_target_class(data, target_class)
sorted_patterns = PrioritySet(k=top_k, theta=theta)
UCB_scores = PrioritySetUCB()
itemsets_memory = get_itemset_memory(data)
# removing class
bitset_slot_size = len(max(data, key=lambda x: len(x))) - 1
global VERTICAL_RPZ
VERTICAL_RPZ = vertical
global VERTICAL_TOOLS
VERTICAL_TOOLS = {
"bitset_slot_size": bitset_slot_size,
"first_zero_mask": compute_first_zero_mask(len(data),
bitset_slot_size),
"last_ones_mask": compute_last_ones_mask(len(data), bitset_slot_size),
"class_data_count": count_target_class_data(data, target_class),
"itemsets_bitsets": {}
}
N = 1
# init: we add objects with the best ucb so that they are all played one time in the main procedure.
# By putting a null N, we ensure the mean of the quality will be correct
for sequence in data_target_class:
sequence_i = sequence_mutable_to_immutable(sequence[1:])
UCB_score = UCB(float("inf"), 1, N)
UCB_scores.add(sequence_i, (UCB_score, 0, 0))
# play with time budget
while datetime.datetime.utcnow(
) - begin < time_budget and N < iterations_limit:
# we take the best UCB
_, Ni, mean_quality, sequence = UCB_scores.pop()
pattern, quality = play_arm(sequence,
data,
target_class,
quality_measure=quality_measure)
pattern = sequence_mutable_to_immutable(pattern)
sorted_patterns.add(pattern, quality)
# we update scores
updated_quality = (Ni * mean_quality + quality) / (Ni + 1)
UCB_score = UCB(updated_quality, Ni + 1, N)
UCB_scores.add(sequence, (UCB_score, Ni + 1, updated_quality))
N += 1
# print("SeqScout iterations: {}".format(N))
return sorted_patterns.get_top_k_non_redundant(data, top_k)
'''
