def validiate_program_28():
factor_validation_sets, target_validation_sets = generate_validation_sets()
transcriptional_programs, factor_universe, target_universe = threshold_tps()
factor_universe = set(factor_universe)
target_universe = set(target_universe)
restrict_validation_sets(factor_validation_sets.values(), factor_universe)
restrict_validation_sets(target_validation_sets.values(), target_universe)
tp = transcriptional_programs[28]
for name, reference_set in target_validation_sets.iteritems():
validate_tp_set(tp.k, "Factors", tp.targets, name, reference_set, target_universe)
def validiate_program_28():
factor_validation_sets, target_validation_sets = generate_validation_sets()
transcriptional_programs, factor_universe, target_universe = threshold_tps(
)
factor_universe = set(factor_universe)
target_universe = set(target_universe)
restrict_validation_sets(factor_validation_sets.values(), factor_universe)
restrict_validation_sets(target_validation_sets.values(), target_universe)
tp = transcriptional_programs[28]
for name, reference_set in target_validation_sets.iteritems():
validate_tp_set(tp.k, 'Factors', tp.targets, name, reference_set,
target_universe)
def validate():
"""
Validate the transcriptional programs against the validation sets.
"""
factor_validation_sets, target_validation_sets = generate_validation_sets()
transcriptional_programs, factor_universe, target_universe = threshold_tps()
factor_universe = set(factor_universe)
target_universe = set(target_universe)
restrict_validation_sets(factor_validation_sets.values(), factor_universe)
restrict_validation_sets(target_validation_sets.values(), target_universe)
latex_f = open(os.path.join(options.output_dir, "validation.tex"), "w")
for tp in transcriptional_programs:
# logging.info('Validating transcriptional program %d against %d sets of factors.', tp.k, len(factor_validation_sets))
for name, reference_set in factor_validation_sets.iteritems():
validate_tp_set(tp.k, "Factors", tp.factors, name, reference_set, factor_universe, latex_f)
# logging.info('Validating transcriptional program %d against %d sets of targets.', tp.k, len(target_validation_sets))
for name, reference_set in target_validation_sets.iteritems():
validate_tp_set(tp.k, "Targets", tp.targets, name, reference_set, target_universe, latex_f)
latex_f.close()
def validate():
"""
Validate the transcriptional programs against the validation sets.
"""
factor_validation_sets, target_validation_sets = generate_validation_sets()
transcriptional_programs, factor_universe, target_universe = threshold_tps(
)
factor_universe = set(factor_universe)
target_universe = set(target_universe)
restrict_validation_sets(factor_validation_sets.values(), factor_universe)
restrict_validation_sets(target_validation_sets.values(), target_universe)
latex_f = open(os.path.join(options.output_dir, 'validation.tex'), 'w')
for tp in transcriptional_programs:
#logging.info('Validating transcriptional program %d against %d sets of factors.', tp.k, len(factor_validation_sets))
for name, reference_set in factor_validation_sets.iteritems():
validate_tp_set(tp.k, 'Factors', tp.factors, name, reference_set,
factor_universe, latex_f)
#logging.info('Validating transcriptional program %d against %d sets of targets.', tp.k, len(target_validation_sets))
for name, reference_set in target_validation_sets.iteritems():
validate_tp_set(tp.k, 'Targets', tp.targets, name, reference_set,
target_universe, latex_f)
latex_f.close()
