def mkmitral(gid):
nrn = getmitral(gid)
m = h.Mitral()
m.createsec(len(nrn.dend), len(nrn.tuft))
m.subsets()
m.topol(0) # need to connect secondary dendrites explicitly
for i, d in enumerate(nrn.dend):
# <<< check my changed if
if(d.parent == nrn.soma): # <<< changed name
m.secden[i].connect(m.soma(.5))
else:
m.secden[i].connect(m.secden[d.parent.index](1)) # <<< changed name
m.geometry()
m.segments() # depends on geometry
m.geometry() # again to get the hillock stylized shape
fillall(nrn, m)
m.segments() # again to get the proper number of segments for tuft and secden
m.soma.push()
m.x = h.x3d(0)
m.y = h.y3d(0)
m.z = h.z3d(0)
h.pop_section()
m.memb()
return m
def mkmitral(gid):
nrn = getmitral(gid)
m = h.Mitral()
m.createsec(len(nrn.dend), len(nrn.tuft))
m.subsets()
m.topol(0) # need to connect secondary dendrites explicitly
for i, d in enumerate(nrn.dend):
# <<< check my changed if
if (d.parent == nrn.soma): # <<< changed name
m.secden[i].connect(m.soma(.5))
else:
m.secden[i].connect(
m.secden[d.parent.index](1)) # <<< changed name
m.geometry()
m.segments() # depends on geometry
m.geometry() # again to get the hillock stylized shape
fillall(nrn, m)
m.segments(
) # again to get the proper number of segments for tuft and secden
m.soma.push()
m.x = h.x3d(0)
m.y = h.y3d(0)
m.z = h.z3d(0)
h.pop_section()
m.memb()
return m
def __init__(self, mgid):
self.mgid = mgid
from getmitral import getmitral
self.mitral = getmitral(mgid)
self.soma = None
self.apic = None
self.dend = []
self.tuft = []
self.soma_color = (250. / 255, 210. / 255, 51. / 255)
self.section_color = (1., 1., 1.)
self.__vtkconvert()
self.conn_info = []
tointerp = set()
for isec in range(len(self.dend)):
for iseg in range(len(self.dend[isec])):
tointerp.add((2, isec, iseg))
for gid in gd.mgid_dict[mgid]:
if gid >= params.gid_granule_begin + granules.ngranule:
if gid % 2 == 0:
self.conn_info.append(gd.gid_dict[gid])
isec, x = gd.gid_dict[gid][1:3]
iseg = int(x * len(self.dend[isec]))
if iseg >= len(self.dend[isec]):
iseg = len(self.dend[isec]) - 1
tointerp.discard((2, isec, iseg))
self.__tointerp = self.__interp_rules(tointerp)
self.__show_weights = False
def __init__(self, mgid):
self.mgid = mgid
from getmitral import getmitral
self.mitral = getmitral(mgid)
self.soma = None
self.apic = None
self.dend = []
self.tuft = []
self.soma_color = (250. / 255, 210. / 255, 51. / 255)
self.section_color = (1., 1., 1.)
self.__vtkconvert()
self.conn_info = []
tointerp = set()
for isec in range(len(self.dend)):
for iseg in range(len(self.dend[isec])):
tointerp.add((2, isec, iseg))
for gid in gd.mgid_dict[mgid]:
if gid >= params.gid_granule_begin + granules.ngranule:
if gid % 2 == 0:
self.conn_info.append(gd.gid_dict[gid])
isec, x = gd.gid_dict[gid][1:3]
iseg = int(x*len(self.dend[isec]))
if iseg >= len(self.dend[isec]):
iseg = len(self.dend[isec])-1
tointerp.discard((2, isec, iseg))
self.__tointerp = self.__interp_rules(tointerp)
self.__show_weights = False
