def process_file(self, sequence_file):
"""Processes the given sequence file"""
self.log.info("Processing file: %s..." % sequence_file)
sequence_file = os.path.abspath(sequence_file)
with temporary_dir(change=True) as dirname:
self.log.debug("Using temporary directory: %s" % dirname)
ok = self.run_formatdb(sequence_file)
ok = ok and self.run_blastall(sequence_file)
if not ok:
return False
return True
def process_file(self, sequence_file):
"""Processes the given sequence file"""
self.log.info("Processing file: %s..." % sequence_file)
sequence_file = os.path.abspath(sequence_file)
with temporary_dir(change=True) as dirname:
self.log.debug("Using temporary directory: %s" % dirname)
ok = self.run_formatdb(sequence_file)
ok = ok and self.run_blastall(sequence_file)
if not ok:
return False
return True
def process_file(self, sequence_file):
"""Processes the given sequence file"""
self.log.info("Processing file: %s..." % sequence_file)
sequence_file = os.path.abspath(sequence_file)
tmp_dir = self.options.temporary_dir
if tmp_dir is not None:
tmp_dir = os.path.abspath(tmp_dir)
if tmp_dir and not os.path.exists(tmp_dir):
os.makedirs(tmp_dir)
with temporary_dir(change=True, dir=tmp_dir) as dirname:
self.log.debug("Using temporary directory: %s" % dirname)
ok = self.run_formatdb(sequence_file)
ok = ok and self.run_blastall(sequence_file)
if not ok:
return False
return True