def test_read(self):
""" Read multiband image """
geoimg = gpt.get_test_image()
arr = geoimg.read()
self.assertEqual(geoimg.nbands(), arr.shape[0])
# make sure x, y dimensions are same when reading single bands
self.assertEqual(arr.shape[1:3], geoimg[0].read().shape)
def test_scale(self):
""" Scale image to byte range """
geoimg = gpt.get_test_image()
for band in geoimg:
band = band.autoscale(minout=1, maxout=255, percent=2.0)
self.assertTrue(band.min() == 1)
self.assertTrue(band.max() == 255)
def test_read(self):
""" Read multiband image """
geoimg = gpt.get_test_image()
arr = geoimg.read()
self.assertEqual(geoimg.nbands(), arr.shape[0])
# make sure x, y dimensions are same when reading single bands
self.assertEqual(arr.shape[1:3], geoimg[0].read().shape)
def test_select(self):
""" Selection of bands from GeoImage """
img1 = gpt.get_test_image()
img2 = img1.select(['red', 'green', 'blue'])
self.assertTrue(np.array_equal(img1['red'].read(), img2[0].read()))
self.assertTrue(np.array_equal(img1['green'].read(), img2[1].read()))
self.assertTrue(np.array_equal(img1['blue'].read(), img2[2].read()))
def test_scale(self):
""" Scale image to byte range """
geoimg = gpt.get_test_image()
for band in geoimg:
band = band.autoscale(minout=1, maxout=255, percent=2.0)
self.assertTrue(band.min() == 1)
self.assertTrue(band.max() == 255)
def test_pansharpen(self):
""" Pansharpen multispectral image with panchromatic image """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue', 'nir'])
panimg = gpt.get_test_image(bands=['pan'])
fout = 'test-pansharpen.tif'
imgout = alg.pansharp_brovey(geoimg, panimg, filename=fout)
self.assertAlmostEqual(imgout.resolution().x(), panimg.resolution().x(), places=1)
self.assertAlmostEqual(imgout.resolution().y(), panimg.resolution().y(), places=1)
self.assertEqual(imgout.nbands(), 4)
os.remove(fout)
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
imgout = alg.pansharp_brovey(geoimg, panimg, filename=fout)
self.assertEqual(imgout.nbands(), 3)
self.assertAlmostEqual(imgout.resolution().x(), panimg.resolution().x(), places=1)
self.assertAlmostEqual(imgout.resolution().y(), panimg.resolution().y(), places=1)
os.remove(fout)
def test_select(self):
""" Selection of bands from GeoImage """
img1 = gpt.get_test_image()
img2 = img1.select(['red', 'green', 'blue'])
self.assertTrue(np.array_equal(img1['red'].read(), img2[0].read()))
self.assertTrue(np.array_equal(img1['green'].read(), img2[1].read()))
self.assertTrue(np.array_equal(img1['blue'].read(), img2[2].read()))
def test_real_warp(self):
""" Warp real image to another projection """
geoimg = gpt.get_test_image()
fout = 'test-realwarp.tif'
imgout = geoimg.warp(fout, proj='EPSG:4326', xres=0.0003, yres=0.0003)
self.assertEqual(imgout.xsize(), 653)
self.assertEqual(imgout.ysize(), 547)
os.remove(fout)
def test_save_with_gain(self):
""" Save image with a gain, which should copy through """
geoimg = gpt.get_test_image().select([2])
geoimg.set_gain(0.0001)
fout = 'test-savegain.tif'
imgout = geoimg.save(fout)
assert_array_equal(imgout.read(), geoimg.read())
os.remove(fout)
def test_save_with_gain(self):
""" Save image with a gain, which should copy through """
geoimg = gpt.get_test_image().select([2])
geoimg.set_gain(0.0001)
fout = 'test-savegain.tif'
imgout = geoimg.save(fout)
assert_array_equal(imgout.read(), geoimg.read())
os.remove(fout)
def test_real_warp(self):
""" Warp real image to another projection """
geoimg = gpt.get_test_image()
fout = 'test-realwarp.tif'
imgout = geoimg.warp(fout, proj='EPSG:4326', xres=0.0003, yres=0.0003)
self.assertEqual(imgout.xsize(), 653)
self.assertEqual(imgout.ysize(), 547)
os.remove(fout)
def test_warp_into(self):
""" Warp real image into an existing image """
geoimg = gpt.get_test_image().select([1])
ext = geoimg.extent()
bbox = np.array([ext.x0(), ext.y0(), ext.width(), ext.height()])
imgout = gp.GeoImage.create('', geoimg.xsize(), geoimg.ysize(), 1, geoimg.srs(),
bbox, geoimg.type().string());
geoimg.warp_into(imgout)
self.assertEqual(imgout.read().sum(), geoimg.read().sum())
def test_sqrt(self):
""" Calculate sqrt of image """
geoimg = gpt.get_test_image().select(['red', 'green', 'swir1', 'nir'])
for band in geoimg:
vals = band.sqrt().read()
mask = band.data_mask() == 1
# check against numpy
arr = band.read()
self.assertTrue((vals[mask] == np.sqrt(arr[mask])).any())
def test_sqrt(self):
""" Calculate sqrt of image """
geoimg = gpt.get_test_image().select(['red', 'green', 'swir1', 'nir'])
for band in geoimg:
vals = band.sqrt().read()
mask = band.data_mask() == 1
# check against numpy
arr = band.read()
self.assertTrue((vals[mask] == np.sqrt(arr[mask])).any())
def test_save(self):
""" Save image as new image with different datatype """
fout = 'test-byte.tif'
geoimg = gpt.get_test_image().autoscale(1.0, 255.0).save(fout, 'uint8')
geoimg = None
geoimg = gp.GeoImage(fout)
self.assertEqual(geoimg.type().string(), 'uint8')
self.assertEqual(geoimg[0].min(), 1.0)
self.assertEqual(geoimg[0].max(), 255.0)
os.remove(fout)
def test_autoscale(self):
""" Auto scale each band in image """
geoimg = gpt.get_test_image()
for band in geoimg:
self.assertTrue(band.min() != 1.0)
self.assertTrue(band.max() != 255.0)
geoimg2 = geoimg.autoscale(minout=1.0, maxout=255.0)
for band in geoimg2:
self.assertTrue(band.min() == 1)
self.assertTrue(band.max() == 255)
def test_autoscale(self):
""" Auto scale each band in image """
geoimg = gpt.get_test_image()
for band in geoimg:
self.assertTrue(band.min() != 1.0)
self.assertTrue(band.max() != 255.0)
geoimg2 = geoimg.autoscale(minout=1.0, maxout=255.0)
for band in geoimg2:
self.assertTrue(band.min() == 1)
self.assertTrue(band.max() == 255)
def test_save(self):
""" Save image as new image with different datatype """
fout = 'test-byte.tif'
geoimg = gpt.get_test_image().autoscale(1.0, 255.0).save(fout, 'uint8')
geoimg = None
geoimg = gp.GeoImage(fout)
self.assertEqual(geoimg.type().string(), 'uint8')
self.assertEqual(geoimg[0].min(), 1.0)
self.assertEqual(geoimg[0].max(), 255.0)
os.remove(fout)
def test_rxd(self):
""" RX anamoly detector """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
fout = 'test-rxd.tif'
rxd = alg.rxd(geoimg, filename=fout)
self.assertEqual(rxd.bandnames()[0], "RXD")
self.assertEqual(rxd.xsize(), geoimg.xsize())
self.assertEqual(rxd.ysize(), geoimg.ysize())
self.assertEqual(rxd.nbands(), 1)
rxd = None
os.remove(fout)
def test_stats(self):
""" Calculate statistics using gippy """
geoimg = gpt.get_test_image()
for band in geoimg:
stats = band.stats()
mask = band.data_mask() == 1
# check against numpy
arr = band.read()
self.assertAlmostEqual(arr[mask].min(), stats[0])
self.assertAlmostEqual(arr[mask].max(), stats[1])
self.assertAlmostEqual(arr[mask].mean(), stats[2], places=2)
def test_rxd(self):
""" RX anamoly detector """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
fout = 'test-rxd.tif'
rxd = alg.rxd(geoimg, filename=fout)
self.assertEqual(rxd.bandnames()[0], "RXD")
self.assertEqual(rxd.xsize(), geoimg.xsize())
self.assertEqual(rxd.ysize(), geoimg.ysize())
self.assertEqual(rxd.nbands(), 1)
rxd = None
os.remove(fout)
def test_stats(self):
""" Calculate statistics using gippy """
geoimg = gpt.get_test_image()
for band in geoimg:
stats = band.stats()
mask = band.data_mask() == 1
# check against numpy
arr = band.read()
self.assertAlmostEqual(arr[mask].min(), stats[0])
self.assertAlmostEqual(arr[mask].max(), stats[1])
self.assertAlmostEqual(arr[mask].mean(), stats[2], places=2)
def test_cookiecutter_real_crop(self):
""" Test cookie cutter with cropping """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg32416.shp'))
imgout = alg.cookie_cutter([geoimg], feature=feature[0], xres=30.0, yres=30.0, crop=True)
extin = feature.extent()
extout = imgout.extent()
self.assertTrue(extout.x0() >= extin.x0())
self.assertTrue(extout.y0() >= extin.y0())
self.assertTrue(extout.x1() <= extin.x1())
self.assertTrue(extout.y1() <= extin.y1())
def test_cookiecutter_real_reproj(self):
""" Test with different projection """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg32416.shp'))
extin = feature.extent()
# test extent matches feature
imgout = alg.cookie_cutter([geoimg], feature=feature[0], xres=30.0, yres=30.0)
extout = imgout.extent()
self.assertAlmostEqual(extout.x0(), extin.x0())
self.assertAlmostEqual(extout.y0(), extin.y0())
self.assertAlmostEqual(extout.x1(), extin.x1())
self.assertAlmostEqual(extout.y1(), extin.y1())
def test_cookiecutter_real(self):
""" Cookie cutter on single real image """
geoimg = gpt.get_test_image().select(['red']) #, 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
# test with feature of different projection
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg4326.shp'))
extin = feature.extent()
imgout = alg.cookie_cutter([geoimg], feature=feature[0], xres=0.0003, yres=0.0003)
extout = imgout.extent()
self.assertAlmostEqual(extout.x0(), extin.x0())
self.assertAlmostEqual(extout.y0(), extin.y0())
self.assertAlmostEqual(extout.x1(), extin.x1())
self.assertAlmostEqual(extout.y1(), extin.y1())
def test_ndvi_numpy(self):
""" Calculate NDVI using numpy (for speed comparison) """
geoimg = gpt.get_test_image()
nodata = geoimg[0].nodata()
red = geoimg['RED'].read().astype('double')
nir = geoimg['NIR'].read().astype('double')
ndvi = np.zeros(red.shape) + nodata
inds = np.logical_and(red != nodata, nir != nodata)
ndvi[inds] = (nir[inds] - red[inds]) / (nir[inds] + red[inds])
fout = 'test-ndvi2.tif'
geoimgout = gp.GeoImage.create_from(geoimg, fout, dtype="float64")
geoimgout[0].write(ndvi)
geoimgout = None
geoimg = None
os.remove(fout)
def test_pansharpen(self):
""" Pansharpen multispectral image with panchromatic image """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue', 'nir'])
panimg = gpt.get_test_image(bands=['pan'])
fout = 'test-pansharpen.tif'
imgout = alg.pansharp_brovey(geoimg, panimg, filename=fout)
self.assertAlmostEqual(imgout.resolution().x(),
panimg.resolution().x(),
places=1)
self.assertAlmostEqual(imgout.resolution().y(),
panimg.resolution().y(),
places=1)
self.assertEqual(imgout.nbands(), 4)
os.remove(fout)
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
imgout = alg.pansharp_brovey(geoimg, panimg, filename=fout)
self.assertEqual(imgout.nbands(), 3)
self.assertAlmostEqual(imgout.resolution().x(),
panimg.resolution().x(),
places=1)
self.assertAlmostEqual(imgout.resolution().y(),
panimg.resolution().y(),
places=1)
os.remove(fout)
def test_ndvi_numpy(self):
""" Calculate NDVI using numpy (for speed comparison) """
geoimg = gpt.get_test_image()
nodata = geoimg[0].nodata()
red = geoimg['RED'].read().astype('double')
nir = geoimg['NIR'].read().astype('double')
ndvi = np.zeros(red.shape) + nodata
inds = np.logical_and(red != nodata, nir != nodata)
ndvi[inds] = (nir[inds] - red[inds])/(nir[inds] + red[inds])
fout = 'test-ndvi2.tif'
geoimgout = gp.GeoImage.create_from(geoimg, fout, dtype="float64")
geoimgout[0].write(ndvi)
geoimgout = None
geoimg = None
os.remove(fout)
def test_cookiecutter_real(self):
""" Cookie cutter on single real image """
geoimg = gpt.get_test_image().select(['red']) #, 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
# test with feature of different projection
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg4326.shp'))
extin = feature.extent()
imgout = alg.cookie_cutter([geoimg],
feature=feature[0],
xres=0.0003,
yres=0.0003)
extout = imgout.extent()
self.assertAlmostEqual(extout.x0(), extin.x0())
self.assertAlmostEqual(extout.y0(), extin.y0())
self.assertAlmostEqual(extout.x1(), extin.x1())
self.assertAlmostEqual(extout.y1(), extin.y1())
def test_cookiecutter_real_crop(self):
""" Test cookie cutter with cropping """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg32416.shp'))
imgout = alg.cookie_cutter([geoimg],
feature=feature[0],
xres=30.0,
yres=30.0,
crop=True)
extin = feature.extent()
extout = imgout.extent()
self.assertTrue(extout.x0() >= extin.x0())
self.assertTrue(extout.y0() >= extin.y0())
self.assertTrue(extout.x1() <= extin.x1())
self.assertTrue(extout.y1() <= extin.y1())
def test_cookiecutter_real_reproj(self):
""" Test with different projection """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg32416.shp'))
extin = feature.extent()
# test extent matches feature
imgout = alg.cookie_cutter([geoimg],
feature=feature[0],
xres=30.0,
yres=30.0)
extout = imgout.extent()
self.assertAlmostEqual(extout.x0(), extin.x0())
self.assertAlmostEqual(extout.y0(), extin.y0())
self.assertAlmostEqual(extout.x1(), extin.x1())
self.assertAlmostEqual(extout.y1(), extin.y1())
def test_ndvi(self):
""" Calculate NDVI using gippy and apply colortable """
geoimg = gpt.get_test_image()
fout = 'test-ndvi.tif'
imgout = alg.indices(geoimg, ['ndvi'])
# add colorramp
red = np.array([255, 0, 0])
green = np.array([0, 255, 0])
white = np.array([255, 255, 255])
imgout[0] = imgout[0].scale(-1.0, 1.0, 1, 255)
imgout = imgout.save(fout, dtype='byte')
# add color ramp for negative values
imgout[0].add_colortable(red, white, value1=0, value2=128)
# add color ramp for positive values
imgout[0].add_colortable(white, green, value1=128, value2=255)
# TODO - actually test something here
os.remove(fout)
def test_ndvi(self):
""" Calculate NDVI using gippy and apply colortable """
geoimg = gpt.get_test_image()
fout = 'test-ndvi.tif'
imgout = alg.indices(geoimg, ['ndvi'])
# add colorramp
red = np.array([255, 0, 0])
green = np.array([0, 255, 0])
white = np.array([255, 255, 255])
imgout[0] = imgout[0].scale(-1.0, 1.0, 1, 255)
imgout = imgout.save(fout, dtype='byte')
# add color ramp for negative values
imgout[0].add_colortable(red, white, value1=0, value2=128)
# add color ramp for positive values
imgout[0].add_colortable(white, green, value1=128, value2=255)
# TODO - actually test something here
os.remove(fout)
def test_cookiecutter_real_reproj(self):
""" Test with different projection """
geoimg = gpt.get_test_image().select(['red', 'green', 'blue'])
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg32416.shp'))
extin = feature.extent()
# test extent matches feature
imgout = alg.cookie_cutter([geoimg],
feature=feature[0],
xres=30.0,
yres=30.0)
extout = imgout.extent()
self.assertAlmostEqual(extout.x0() + 15, extin.x0())
self.assertAlmostEqual(extout.y0() + 15, extin.y0())
# cookie cutter will never add more than a pixel and a half in width
self.assertTrue(extout.x1() - extin.x1() < 45.0)
self.assertTrue(extout.y1() - extin.y1() < 45.0)
self.assertEqual(imgout.resolution().x(), 30.0)
self.assertEqual(imgout.resolution().y(), -30.0)
def test_cookiecutter_real(self):
""" Cookie cutter on single real image """
geoimg = gpt.get_test_image().select(['red']) #, 'green', 'blue'])
iext = geoimg.extent()
vpath = os.path.join(os.path.dirname(__file__), 'vectors')
# test with feature of different projection
feature = gp.GeoVector(os.path.join(vpath, 'aoi1_epsg4326.shp'))
extin = feature.extent()
imgout = alg.cookie_cutter([geoimg],
feature=feature[0],
xres=0.0003,
yres=0.0003)
extout = imgout.extent()
self.assertAlmostEqual(extout.x0() + 0.00015, extin.x0())
self.assertAlmostEqual(extout.y0() + 0.00015, extin.y0())
# cookie cutter will never add more than a pixel and a half in width
self.assertTrue(extout.x1() - extin.x1() < 0.0045)
self.assertTrue(extout.y1() - extin.y1() < 0.0045)
self.assertAlmostEqual(imgout.resolution().x(), 0.0003)
self.assertAlmostEqual(imgout.resolution().y(), -0.0003)
def test_affine(self):
""" Compare affine vs coordinates and resolution """
geoimg = gp.GeoImage.create(xsz=100, ysz=100)
aff = geoimg.affine()
self.assertEqual(len(aff), 6)
self.assertEqual(aff[0], geoimg.minxy().x())
self.assertEqual(aff[1], geoimg.resolution().x())
self.assertEqual(aff[2], 0.0)
self.assertEqual(aff[3], geoimg.maxxy().y())
self.assertEqual(aff[4], 0.0)
self.assertEqual(aff[5], geoimg.resolution().y())
# test with real image
geoimg = gpt.get_test_image()
aff = geoimg.affine()
self.assertEqual(len(aff), 6)
self.assertEqual(aff[0], geoimg.minxy().x())
self.assertEqual(aff[1], geoimg.resolution().x())
self.assertEqual(aff[2], 0.0)
self.assertEqual(aff[3], geoimg.maxxy().y())
self.assertEqual(aff[4], 0.0)
self.assertEqual(aff[5], geoimg.resolution().y())
def test_loop_through_bands(self):
""" Check that GeoImage is iterable """
geoimg = gpt.get_test_image()
for band in geoimg:
self.assertEqual(band.xsize(), geoimg.xsize())
def test0_open(self):
""" Open existing image """
geoimg = gpt.get_test_image()
self.assertEqual(geoimg.xsize(), 627)
self.assertEqual(geoimg.ysize(), 603)
def test_real_histogram(self):
""" Calculate histogram of real data """
geoimg = gpt.get_test_image()
hist = geoimg[0].histogram(normalize=False)
self.assertEqual(len(hist), 100)
self.assertEqual(hist.sum(), geoimg.size())
def test_read_random_pixels(self):
""" Read random pixels """
geoimg = gpt.get_test_image()
arr = geoimg.read_random_pixels(1000)
def test_loop_through_bands(self):
""" Check that GeoImage is iterable """
geoimg = gpt.get_test_image()
for band in geoimg:
self.assertEqual(band.xsize(), geoimg.xsize())
def test0_open(self):
""" Open existing image """
geoimg = gpt.get_test_image()
self.assertEqual(geoimg.xsize(), 627)
self.assertEqual(geoimg.ysize(), 603)
def test_real_histogram(self):
""" Calculate histogram of real data """
geoimg = gpt.get_test_image()
hist = geoimg[0].histogram(normalize=False)
self.assertEqual(len(hist), 100)
self.assertEqual(hist.sum(), geoimg.size())
