import gl
gl.resetdefaults()
gl.meshload('~/catani/fs_LR.L.inflated_va_avg.32k_fs_LR.surf.gii')
gl.overlayload('~/catani/Wang_2015.32k_fs_LR.dlabel.nii')
gl.contour(gl.overlaycount())
gl.overlaycolorname(gl.overlaycount(), 'Grayscale')
#invert color scheme so borders are black not white
gl.overlayinvert(gl.overlaycount(), 1)
import gl
gl.resetdefaults()
gl.meshload('BrainMesh_ICBM152.rh.mz3')
gl.meshcurv()
gl.overlayminmax(1, -1, 1)
gl.overlaycolorname(1, 'surface')
gl.overlayinvert(1, 1)
gl.overlayload('motor_4t95vol.nii.gz')
gl.overlaycolorname(2, 'kelvin')
gl.overlayminmax(2, 2, 7)
gl.overlayload('scalp.mz3')
gl.overlaycolorname(3, 'gold')
gl.shaderxray(1.0, 0.9)
gl.meshoverlayorder(1)
gl.colorbarvisible(0)
gl.shaderambientocclusion(0.05)
gl.azimuthelevation(90, 15)
gl.clipazimuthelevation(0.5, 0, 90)
import gl
gl.resetdefaults()
gl.meshload('~/catani/fs_LR.L.inflated_va_avg.32k_fs_LR.surf.gii')
gl.overlayload('~/catani/Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii')
gl.contour(0)
gl.atlassaturationalpha(0.9, 0.5)
gl.overlaycolorname(1,'Grayscale')
gl.overlayinvert(1,1);