import gl
gl.resetdefaults()
gl.view(16)
#open background image
gl.loadimage('spm152')
#open overlay: show positive regions
gl.overlayload('spmMotor')
gl.minmax(1, -4, 4)
gl.colorname(1, 'blue2red')
gl.opacity(1, 80)
gl.orthoviewmm(0, 0, 60)
gl.zerointensityinvisible(1, 1)
gl.minmax(1, 0, 3)
gl.minmax(2, 0, 3)
gl.colorname(1, '1red')
gl.colorname(2, '3blue')
output_dir_path = os.path.join(analysis_path, 'imageSequenceFolders',
'pVal_inv_sig_InDe')
if not os.path.exists(output_dir_path):
os.mkdir(output_dir_path)
y_min = -13.15
y_max = 0
y_step = 0.05
y = y_min
count = 0
while y <= y_max:
print(y)
count = count + 1
print(count)
gl.orthoviewmm(0, y, -4)
gl.view(2)
gl.linewidth(0)
gl.colorbarposition(0)
filepath = os.path.join(output_dir_path, 'imagenew' + '_' +
str(round(count)).rjust(3, '0')) + '_' + str(y)
gl.savebmp(filepath)
y = y + y_step
#import glob
#import imageio
#import PIL.Image
#from PIL import Image
#help(PIL)
#PIL.ImageChops
#sys.path.append('C:\Users\Enzon\Documents\Projects\MEP\mep-scripts\venv\Lib\site-packages')
#import numpy as np
#help(np)
help(gl)
gl.linewidth(1)
gl.view(64)
round(0.1)
nRot = 50
data_path = 'C:/Users/enzon/Documents/Projects/MEP/mep-scripts/Data/Mouse/Processed_Old/'
analysis_path = 'C:/Users/enzon/Documents/Projects/MEP/mep-scripts/Data/Mouse/Analysis/imageSequenceFolders/'
subjects = [
'WT_50', 'KO_6', 'KO_3A_2'
] #######################################################################
for subject in subjects:
for i in range(5):
if i == 0: