Example #1
0
 def load_datasets(data, each):
     '''
     Modify data by load datasets and filter by condition.
     Modify each to apply the each: argument, else return (None, None)
     '''
     for key, val in datasets.items():
         # Allow raw data in lists as-is. Treat dicts as {url: ...}
         data[key] = val if isinstance(val, list) else gramex.data.filter(
             **val)
     result = condition(**data)
     # Avoiding isinstance(result, pd.DataFrame) to avoid importing pandas
     if type(result).__name__ == 'DataFrame':
         data['data'] = result
     elif isinstance(result, dict):
         data.update(result)
     elif not result:
         app_log.debug('alert: %s stopped. condition = %s', name, result)
         return
     if 'each' in alert:
         each_data = data[alert['each']]
         if isinstance(each_data, dict):
             each += list(each_data.items())
         elif isinstance(each_data, list):
             each += list(enumerate(each_data))
         elif hasattr(each_data, 'iterrows'):
             each += list(each_data.iterrows())
         else:
             raise ValueError(
                 'alert: %s: each: data.%s must be dict/list/DF, not %s' %
                 (name, alert['each'], type(each_data)))
     else:
         each.append((0, None))
Example #2
0
def update_label(handler):
    """
    pre-populated: update and delete options
    user input: insert
    """
    chart_id = handler.path_args[0]
    data = gramex.cache.query(
        "SELECT annotation_id FROM annotations WHERE chart_id={}".format(
            chart_id),
        engine,
        state="SELECT COUNT(*) FROM annotations",
    )["annotation_id"].tolist()

    annotations = json.loads(handler.request.body.decode("utf8"))
    chart_ids = [item["id"] for item in annotations]

    # add incoming annotation that doesn't exist already
    to_delete = set(data) - set(chart_ids)
    [data.remove(k) for k in to_delete]
    # intersection operation
    to_update = set(data) & set(chart_ids)
    # add incoming annotation that doesn't exist already
    to_insert = set(chart_ids) - set(data)

    for annotation in annotations:
        value = annotation.pop("value")
        for key in "x y width height".split():
            annotation[key] = value[key]
        annotation["label"] = value["rectanglelabels"][0]
        annotation["chart_id"] = int(chart_id)
        annotation["annotation_id"] = annotation.pop("id")
    [k.update({"user": handler.current_user.email}) for k in annotations]

    df = pd.DataFrame.from_records(annotations)
    # to_delete
    gdata.delete(
        variables["COARSE_LABELS"],
        table="annotations",
        id="annotation_id",
        args={"annotation_id": list(to_delete)},
    )

    # to update
    for _id in to_update:
        args = df[df["annotation_id"] == _id]
        gdata.update(
            variables["COARSE_LABELS"],
            table="annotations",
            id="annotation_id",
            args=args.to_dict(orient="list"),
        )

    args = df[df["annotation_id"].isin(to_insert)]
    gdata.insert(
        variables["COARSE_LABELS"],
        table="annotations",
        id="annotation_id",
        args=args.to_dict(orient="list"),
    )
Example #3
0
    def run_alert(callback=None):
        '''
        Runs the configured alert. If a callback is specified, calls the
        callback with all email arguments. Else sends the email.
        '''
        app_log.info('alert: %s running', name)
        data = {'config': alert}
        for key, dataset in datasets.items():
            # Allow raw data in lists as-is. Treat dicts as {url: ...}
            data[key] = dataset if isinstance(
                dataset, list) else gramex.data.filter(**dataset)

        result = condition(**data)
        # Avoiding isinstance(result, pd.DataFrame) to avoid importing pandas
        if type(result).__name__ == 'DataFrame':
            data['data'] = result
        elif isinstance(result, dict):
            data.update(result)
        elif not result:
            app_log.debug('alert: %s stopped. condition = %s', name, result)
            return

        each = [(None, None)]
        if 'each' in alert:
            each_data = data[alert['each']]
            if isinstance(each_data, dict):
                each = list(each_data.items())
            elif isinstance(each_data, list):
                each = list(enumerate(each_data))
            elif hasattr(each_data, 'iterrows'):
                each = list(each_data.iterrows())
            else:
                app_log.error(
                    'alert: %s: each: requires data.%s to be a dict/list/DataFrame',
                    name, alert['each'])
                return

        kwargslist = []
        for index, row in each:
            data['index'], data['row'], data['config'] = index, row, alert

            # Generate email content
            kwargs = {}
            kwargslist.append(kwargs)
            for key in ['bodyfile', 'htmlfile', 'markdownfile']:
                target = key.replace('file', '')
                if key in templates and target not in templates:
                    path = templates[key].generate(**data).decode('utf-8')
                    tmpl = gramex.cache.open(path, 'template')
                    kwargs[target] = tmpl.generate(**data).decode('utf-8')
            try:
                for key in [
                        'to', 'cc', 'bcc', 'from', 'subject', 'body', 'html',
                        'markdown'
                ]:
                    if key in templates:
                        tmpl = templates[key]
                        if isinstance(tmpl, list):
                            kwargs[key] = []
                            for subtmpl in tmpl:
                                kwargs[key].append(
                                    subtmpl.generate(**data).decode('utf-8'))
                        else:
                            kwargs[key] = tmpl.generate(**data).decode('utf-8')
            except Exception:
                # If any template raises an exception, log it and continue with next email
                app_log.exception('alert: %s(#%s).%s: Template exception',
                                  name, index, key)
                continue
            headers = {}
            # user: {id: ...} creates an X-Gramex-User header to mimic the user
            if 'user' in alert:
                user = json.dumps(alert['user'],
                                  ensure_ascii=True,
                                  separators=(',', ':'))
                headers['X-Gramex-User'] = tornado.web.create_signed_value(
                    info.app.settings['cookie_secret'], 'user', user)
            if 'markdown' in kwargs:
                kwargs['html'] = _markdown_convert(kwargs.pop('markdown'))
            if 'images' in templates:
                kwargs['images'] = {}
                for cid, val in templates['images'].items():
                    urlpath = val.generate(**data).decode('utf-8')
                    urldata = urlfetch(urlpath, info=True, headers=headers)
                    if urldata['content_type'].startswith('image/'):
                        kwargs['images'][cid] = urldata['name']
                    else:
                        with io.open(urldata['name'], 'rb') as temp_file:
                            bytestoread = 80
                            first_line = temp_file.read(bytestoread)
                        app_log.error(
                            'alert: %s: %s: %d (%s) not an image: %s\n%r',
                            name, cid, urldata['r'].status_code,
                            urldata['content_type'], urlpath, first_line)
            if 'attachments' in templates:
                kwargs['attachments'] = [
                    urlfetch(attachment.generate(**data).decode('utf-8'),
                             headers=headers)
                    for attachment in templates['attachments']
                ]
            if callable(callback):
                return callback(**kwargs)
            # Email recipient. TODO: run this in a queue. (Anand)
            mailer.mail(**kwargs)
            # Log the event
            event = {
                'alert':
                name,
                'service':
                service,
                'from':
                mailer.email or '',
                'to':
                '',
                'cc':
                '',
                'bcc':
                '',
                'subject':
                '',
                'datetime':
                datetime.datetime.utcnow().strftime("%Y-%m-%d %H:%M:%SZ")
            }
            event.update({k: v for k, v in kwargs.items() if k in event})
            event['attachments'] = ', '.join(kwargs.get('attachments', []))
            alert_logger.info(event)
        return kwargslist