def build_model(self, height, width, num_channels):
self.config['height'] = height
self.config['width'] = width
self.config['num_channels'] = num_channels
self.graph = tf.Graph()
with self.graph.as_default():
self.model_graph = Factory(self.config.__dict__)
print(self.model_graph)
self.trainable_count = np.sum([
np.prod(v.get_shape().as_list())
for v in tf.trainable_variables()
])
print('\nNumber of trainable paramters', self.trainable_count)
self.test_graph()
''' -------------------------------------------------------------------------------
GOOGLE COLAB
------------------------------------------------------------------------------------- '''
if self.config.colab:
self.push_colab()
self.config.push_colab = self.push_colab
self.isBuild = True
utils.save_args(self.config.dict(), self.config.model_name,
self.config.summary_dir)
def build_model(self, height, width, num_channels):
self.config.height = height
self.config.width = width
self.config.num_channels = num_channels
self.graph = tf.Graph()
with self.graph.as_default():
self.model_graph = Factory(self.config)
print(self.model_graph)
self.trainable_count = np.sum([
np.prod(v.get_shape().as_list())
for v in tf.trainable_variables()
])
print('\nNumber of trainable paramters', self.trainable_count)
self.test_graph()
'''
-------------------------------------------------------------------------------
GOOGLE COLAB
-------------------------------------------------------------------------------------
'''
if self.config.colab:
self.push_colab()
self.config.push_colab = self.push_colab
self.config.isBuild = True
file_utils.save_args(self.config.dict(), self.config.model_name,
self.config.config_dir,
['latent_mean', 'latent_std'])
def build_model(self, height, width, num_channels):
self.config.height = height
self.config.width = width
self.config.num_channels = num_channels
self.graph = tf.Graph()
with self.graph.as_default():
self.model_graph = Factory(self.config)
print(self.model_graph)
self.trainable_count = np.sum([np.prod(v.get_shape().as_list()) for v in tf.trainable_variables()])
print('\nNumber of trainable paramters', self.trainable_count)
self.test_graph()
self.config.isBuilt=True
class TrainerAE(BaseModel):
'''
------------------------------------------------------------------------------
SET ARGUMENTS
-------------------------------------------------------------------------------
'''
def __init__(self, **kwrds):
self.config = copy.deepcopy(config())
for key in kwrds.keys():
assert key in self.config.keys(), '{} is not a keyword, \n acceptable keywords: {}'. \
format(key, self.config.keys())
self.config[key] = kwrds[key]
self.latent_data = None
self.experiments_root_dir = 'experiments'
file_utils.create_dirs([self.experiments_root_dir])
self.config.model_name = get_model_name(self.config.graph_type, self.config)
if self.config.colab:
self.google2colab()
self.config.checkpoint_dir = os.path.join(self.experiments_root_dir + '/' + self.config.checkpoint_dir + '/',
self.config.model_name)
self.config.config_dir = os.path.join(self.experiments_root_dir + '/' + self.config.config_dir + '/',
self.config.model_name)
self.config.log_dir = os.path.join(self.experiments_root_dir + '/' + self.config.log_dir + '/',
self.config.model_name)
log_dir_subfolders = ['reconst', 'latent2d', 'latent3d', 'samples', 'total_random', 'pretoss_random', 'interpolate']
config_dir_subfolders = ['extra']
file_utils.create_dirs([self.config.checkpoint_dir, self.config.config_dir, self.config.log_dir])
file_utils.create_dirs([self.config.log_dir + '/' + dir_ + '/' for dir_ in log_dir_subfolders])
file_utils.create_dirs([self.config.config_dir + '/' + dir_ + '/' for dir_ in config_dir_subfolders])
load_config = {}
try:
load_config = file_utils.load_args(self.config.model_name, self.config.config_dir, ['latent_mean', 'latent_std', 'samples', 'y_uniqs'])
self.config.update(load_config)
print('Loading previous configuration ...')
except:
print('Unable to load previous configuration ...')
file_utils.save_args(self.config.dict(), self.config.model_name, self.config.config_dir,
['latent_mean', 'latent_std', 'samples', 'y_uniqs'])
if hasattr(self.config, 'height'):
try:
self.config.restore = True
self.build_model(self.config.height, self.config.width, self.config.num_channels)
except:
self.config.isBuilt = False
else:
self.config.isBuilt = False
'''
------------------------------------------------------------------------------
EPOCH FUNCTIONS
-------------------------------------------------------------------------------
'''
def _train(self, data_train, session, logger, num_batches):
losses = list()
iterator = data_train.make_one_shot_iterator()
for t in tqdm(range(num_batches)):
batch = session.run(iterator.get_next())
loss_curr = self.model_graph.train_epoch(session, da.from_array(batch['image']/255, chunks=100))
losses.append(loss_curr)
cur_it = self.model_graph.global_step_tensor.eval(session)
summaries_dict = dict(zip(self.model_graph.losses, np.mean(np.vstack(losses), axis=0)))
logger.summarize(cur_it, summarizer='iter_train', log_dict=summaries_dict)
losses = np.mean(np.vstack(losses), axis=0)
cur_it = self.model_graph.global_step_tensor.eval(session)
summaries_dict = dict(zip(self.model_graph.losses, losses))
logger.summarize(cur_it, summarizer='epoch_train', log_dict=summaries_dict)
return losses
def _test(self, data_test, session, logger, num_batches):
losses = list()
iterator = data_test.make_one_shot_iterator()
for t in tqdm(range(num_batches)):
batch = session.run(iterator.get_next())
loss_curr = self.model_graph.test_epoch(session, da.from_array(batch['image']/255, chunks=100))
losses.append(loss_curr)
cur_it = self.model_graph.global_step_tensor.eval(session)
summaries_dict = dict(zip(self.model_graph.losses, np.mean(np.vstack(losses), axis=0)))
logger.summarize(cur_it, summarizer='iter_test', log_dict=summaries_dict)
losses = np.mean(np.vstack(losses), axis=0)
cur_it = self.model_graph.global_step_tensor.eval(session)
summaries_dict = dict(zip(self.model_graph.losses, losses))
logger.summarize(cur_it, summarizer='epoch_test', log_dict=summaries_dict)
return losses
'''
------------------------------------------------------------------------------
EPOCH FUNCTIONS
-------------------------------------------------------------------------------
'''
def fit(self, dataset):
assert str(dataset.__class__).split('.')[0].replace("<class '", '') + '.' + str(dataset.__class__).split('.')[1] \
== "tensorflow_datasets.image", 'The dataset type is not image tensorflow_datasets'
self.data_train = dataset.as_dataset(split=tfds.Split.TRAIN, shuffle_files=True, batch_size=self.config.batch_size)
try:
self.data_test = dataset.as_dataset(split=tfds.Split.TEST, shuffle_files=True, batch_size=self.config.batch_size)
except:
self.data_test = dataset.as_dataset(split=tfds.Split.TRAIN, shuffle_files=True, batch_size=self.config.batch_size)
width = dataset.info.features['image'].shape[0]
height = dataset.info.features['image'].shape[1]
num_channels = dataset.info.features['image'].shape[2]
self.config.ntrain_batches = dataset.info.splits['train'].num_examples // self.config.batch_size
self.config.ntest_batches = dataset.info.splits['test'].num_examples // self.config.batch_size
if not self.config.isBuilt:
self.config.restore=True
self.build_model(height, width, num_channels)
else:
assert (self.config.height == height) and (self.config.width == width) and \
(num_channels == num_channels), \
'Wrong dimension of data. Expected shape {}, and got {}'.\
format((self.config.height, self.config.width, self.config.num_channels), (height, width, num_channels))
'''
-------------------------------------------------------------------------------
TRAIN THE MODEL
-------------------------------------------------------------------------------------
'''
print('\nTraining a model...')
with tf.Session(graph=self.graph) as session:
tf.set_random_seed(self.config.seeds)
self.session = session
logger = Logger(self.session, self.config.log_dir)
self.saver = tf.train.Saver()
early_stopper = EarlyStopping(name='total loss', decay_fn=self.decay_fn)
if(self.config.restore and self.load(self.session, self.saver) ):
load_config = file_utils.load_args(self.config.model_name, self.config.config_dir,
['latent_mean', 'latent_std', 'samples', 'y_uniqs'])
self.config.update(load_config)
num_epochs_trained = self.model_graph.cur_epoch_tensor.eval(self.session)
print('EPOCHS trained: ', num_epochs_trained)
else:
print('Initializing Variables ...')
tf.global_variables_initializer().run()
if self.config.plot:
if self.config.y_uniqs is None:
print('\nFinding the unique categories...')
y_uniqs = list()
iterator = self.data_train.make_one_shot_iterator()
for t in tqdm(range(self.config.ntrain_batches)):
batch = session.run(iterator.get_next())
y, _ = tf.unique(batch[self.config.y_index])
y_uniqs += y.eval().tolist()
self.config.y_uniqs = np.unique(y_uniqs)
if self.config.samples is None:
y_uniqs = self.config.y_uniqs[:10]
y_uniqs = np.array(list(itertools.repeat(y_uniqs, 10))).flatten()[:10]
print('\nSampling from the unique categories...')
samples = dict(zip(y_uniqs, itertools.repeat(list(), len(y_uniqs))))
iterator = self.data_train.make_one_shot_iterator()
for t in tqdm(range(self.config.ntrain_batches)):
batch = session.run(iterator.get_next())
for yi in y_uniqs:
if len(samples[yi]) <= 10:
samples[yi] = samples[yi] + da.from_array(
tf.boolean_mask(mask=batch[self.config.y_index]==yi, tensor=batch['image']).eval(),
chunks=10).compute().tolist()
samples[yi] = samples[yi][:10]
self.config.samples = da.from_array(da.vstack(samples.values()), chunks=10).compute()
if not self.config.isTrained:
for cur_epoch in range(self.model_graph.cur_epoch_tensor.eval(self.session), self.config.epochs+1, 1):
print('EPOCH: ', cur_epoch)
self.current_epoch = cur_epoch
losses_tr = self._train(self.data_train, self.session, logger, self.config.ntrain_batches)
if np.isnan(losses_tr[0]):
print('Encountered NaN, stopping training. Please check the learning_rate settings and the momentum.')
for lname, lval in zip(self.model_graph.losses, losses_tr):
print(lname, lval)
sys.exit()
losses_test = self._test(self.data_test, self.session, logger, self.config.ntest_batches)
train_msg = 'TRAIN: \n'
for lname, lval in zip(self.model_graph.losses, losses_tr):
train_msg += str(lname) + ': ' + str(lval) + ' | '
eval_msg = 'TEST: \n'
for lname, lval in zip(self.model_graph.losses, losses_test):
eval_msg += str(lname) + ': ' + str(lval) + ' | '
print(train_msg)
print(eval_msg)
print()
if (cur_epoch == 1) or ((cur_epoch % self.config.save_epoch == 0) and (cur_epoch != 0)):
self.save_model()
if self.config.plot:
self.plot_latent(cur_epoch)
self.plot_reconst(cur_epoch)
self.session.run(self.model_graph.increment_cur_epoch_tensor)
# Early stopping
if (self.config.early_stopping and early_stopper.stop(losses_test[0])):
print('Early Stopping!')
break
if cur_epoch % self.config.colab_save == 0:
if self.config.colab:
self.push_colab()
self.config.isTrained = True
self.save_model()
if self.config.plot:
self.plot_latent(cur_epoch)
self.plot_reconst(cur_epoch)
if self.config.colab:
self.push_colab()
def save_model(self):
self.save(self.session, self.saver, self.model_graph.global_step_tensor.eval(self.session))
self.compute_distribution(self.data_train, self.session, self.config.ntrain_batches)
file_utils.save_args(self.config.dict(), self.config.model_name, self.config.config_dir,
['latent_mean', 'latent_std', 'samples', 'y_uniqs'])
gc.collect()
def compute_distribution(self, images, session, num_batches):
self.generate_latent(images, session, num_batches)
print("Computing the latent's distribution ... ")
self.model_graph.config.latent_mean = self.latent_data['latent'].mean(axis=0).compute()
self.model_graph.config.latent_std = self.latent_data['latent'].std(axis=0).compute()
def generate_latent(self, images, session, num_batches):
print("Generating latent space ... ")
latents = list()
labels = list()
iterator = images.make_one_shot_iterator()
for t in tqdm(range(num_batches)):
batch = session.run(iterator.get_next())
latents_batch = self.model_graph.encode(session, da.from_array(batch['image']/255, chunks=100))
y_index = list(batch.keys()).index(self.config.y_index)-1
label_batch = da.from_array(np.array([batch[k] for k in batch.keys() if k !='image']), chunks=100)
latents.append(latents_batch)
labels.append(label_batch)
latents = da.from_array(delayed(np.vstack(latents)).compute(), chunks=100)
labels = da.from_array(delayed(np.vstack(labels)).compute(), chunks=100)
self.latent_data = {'latent': latents.reshape((-1, self.config.latent_dim)),
'label': labels.reshape((-1, 1)),
'y_index': y_index}
'''
------------------------------------------------------------------------------
SET NETWORK PARAMS
------------------------------------------------------------------------------
'''
def build_model(self, height, width, num_channels):
self.config.height = height
self.config.width = width
self.config.num_channels = num_channels
self.graph = tf.Graph()
with self.graph.as_default():
self.model_graph = Factory(self.config)
print(self.model_graph)
self.trainable_count = np.sum([np.prod(v.get_shape().as_list()) for v in tf.trainable_variables()])
print('\nNumber of trainable paramters', self.trainable_count)
self.test_graph()
self.config.isBuilt=True
def test_graph(self):
with tf.Session(graph=self.graph) as session:
tf.set_random_seed(self.config.seeds)
self.session = session
self.saver = tf.train.Saver()
if (self.config.restore and self.load(self.session, self.saver)):
load_config = file_utils.load_args(self.config.model_name, self.config.config_dir,
['latent_mean', 'latent_std', 'samples', 'y_uniqs'])
self.config.update(load_config)
num_epochs_trained = self.model_graph.cur_epoch_tensor.eval(self.session)
print('EPOCHS trained: ', num_epochs_trained)
else:
print('Initializing Variables ...')
tf.global_variables_initializer().run()
print('random latent batch ...')
samples = self.model_graph._sampling_reconst(session, std_scales=np.ones(self.config.latent_dim))[0]
print('random latent shape {}'.format(samples.shape))
def _sampling_reconst(self, std_scales, random_latent=None):
def aux_fun(session, rand_samp):
return self.model_graph._sampling_reconst(session=session, std_scales=std_scales, random_latent=rand_samp)
with tf.Session(graph=self.graph) as session:
tf.set_random_seed(self.config.seeds)
self.session = session
self.saver = tf.train.Saver()
if (self.config.restore and self.load(self.session, self.saver)):
load_config = file_utils.load_args(self.config.model_name, self.config.config_dir,
['latent_mean', 'latent_std', 'samples', 'y_uniqs'])
self.config.update(load_config)
num_epochs_trained = self.model_graph.cur_epoch_tensor.eval(self.session)
print('EPOCHS trained: ', num_epochs_trained)
else:
print('Initializing Variables ...')
tf.global_variables_initializer().run()
samples = list()
if random_latent is None:
while True:
samples.append(self.model_graph._sampling_reconst(session=session, std_scales=std_scales)[0])
if len(samples) >= (100//self.config.batch_size)+1:
samples = da.vstack(samples)
samples = samples[:100]
break
else:
samples = self.batch_function(aux_fun, random_latent)
scaler = MinMaxScaler()
return scaler.fit_transform(samples.flatten().reshape(-1, 1).astype(np.float32)).reshape(samples.shape)
class AE(BaseModel):
'''
------------------------------------------------------------------------------
SET ARGUMENTS
-------------------------------------------------------------------------------
'''
def __init__(self, **kwrds):
self.config = utils.Config(copy.deepcopy(const.config))
for key in kwrds.keys():
assert key in self.config.keys(), '{} is not a keyword, \n acceptable keywords: {}'.\
format(key, self.config.keys())
self.config[key] = kwrds[key]
self.experiments_root_dir = 'experiments'
utils.create_dirs([self.experiments_root_dir])
self.config.model_name = const.get_model_name(self.config.model_type,
self.config)
self.config.checkpoint_dir = os.path.join(
self.experiments_root_dir + "/" + self.config.checkpoint_dir + "/",
self.config.model_name)
self.config.summary_dir = os.path.join(
self.experiments_root_dir + "/" + self.config.summary_dir + "/",
self.config.model_name)
self.config.log_dir = os.path.join(
self.experiments_root_dir + "/" + self.config.log_dir + "/",
self.config.model_name)
utils.create_dirs([
self.config.checkpoint_dir, self.config.summary_dir,
self.config.log_dir
])
load_config = {}
try:
load_config = utils.load_args(self.config.model_name,
self.config.summary_dir)
self.config.update(load_config)
self.config.update({
key: const.config[key]
for key in ['kinit', 'bias_init', 'act_out', 'transfer_fct']
})
print('Loading previous configuration ...')
except:
print('Unable to load previous configuration ...')
utils.save_args(self.config.dict(), self.config.model_name,
self.config.summary_dir)
if self.config.plot:
self.latent_space_files = list()
self.latent_space3d_files = list()
self.recons_files = list()
if hasattr(self.config, 'height'):
try:
self.config.restore = True
self.build_model(self.config.height, self.config.width,
self.config.num_channels)
except:
self.isBuild = False
else:
self.isBuild = False
'''
------------------------------------------------------------------------------
EPOCH FUNCTIONS
-------------------------------------------------------------------------------
'''
def _train(self, data_train, session, logger):
losses = list()
for _ in tqdm(range(data_train.num_batches(self.config.batch_size))):
batch_x = next(data_train.next_batch(self.config.batch_size))
loss_curr = self.model_graph.train_epoch(session, batch_x)
losses.append(loss_curr)
losses = np.mean(np.vstack(losses), axis=0)
cur_it = self.model_graph.global_step_tensor.eval(session)
summaries_dict = dict(zip(self.model_graph.losses, losses))
logger.summarize(cur_it,
summarizer='train',
summaries_dict=summaries_dict)
return losses
def _evaluate(self, data_eval, session, logger):
losses = list()
for _ in tqdm(range(data_eval.num_batches(self.config.batch_size))):
batch_x = next(data_eval.next_batch(self.config.batch_size))
loss_curr = self.model_graph.evaluate_epoch(session, batch_x)
losses.append(loss_curr)
losses = np.mean(np.vstack(losses), axis=0)
cur_it = self.model_graph.global_step_tensor.eval(session)
summaries_dict = dict(zip(self.model_graph.losses, losses))
logger.summarize(cur_it,
summarizer='evaluate',
summaries_dict=summaries_dict)
return losses
'''
------------------------------------------------------------------------------
EPOCH FUNCTIONS
-------------------------------------------------------------------------------
'''
def fit(self, X, y=None):
print('\nProcessing data...')
self.data_train, self.data_eval = utils.process_data(X, y)
self.config['num_batches'] = self.data_train.num_batches(
self.config.batch_size)
if not self.isBuild:
self.config.restore = True
self.build_model(self.data_train.height, self.data_train.width,
self.data_train.num_channels)
else:
assert (self.config.height == self.data_train.height) and (self.config.width == self.data_train.width) and \
(self.config.num_channels == self.data_train.num_channels), \
'Wrong dimension of data. Expected shape {}, and got {}'.format((self.config.height,self.config.width, \
self.config.num_channels), \
(self.data_train.height,
self.data_train.width, \
self.data_train.num_channels) \
)
''' -------------------------------------------------------------------------------
TRAIN THE MODEL
------------------------------------------------------------------------------------- '''
print('\nTraining a model...')
with tf.Session(graph=self.graph) as session:
tf.set_random_seed(222222)
self.session = session
logger = Logger(self.session, self.config.summary_dir)
saver = tf.train.Saver()
early_stopper = EarlyStopping(name='total loss',
decay_fn=self.decay_fn)
if (self.config.restore and self.load(self.session, saver)):
num_epochs_trained = self.model_graph.cur_epoch_tensor.eval(
self.session)
print('EPOCHS trained: ', num_epochs_trained)
else:
print('Initializing Variables ...')
tf.global_variables_initializer().run()
for cur_epoch in range(
self.model_graph.cur_epoch_tensor.eval(self.session),
self.config.epochs + 1, 1):
print('EPOCH: ', cur_epoch)
self.current_epoch = cur_epoch
losses_tr = self._train(self.data_train, self.session, logger)
if np.isnan(losses_tr[0]):
print(
'Encountered NaN, stopping training. Please check the learning_rate settings and the momentum.'
)
for lname, lval in zip(self.model_graph.losses, losses_tr):
print(lname, lval)
sys.exit()
losses_eval = self._evaluate(self.data_eval, self.session,
logger)
train_msg = 'TRAIN: \n'
for lname, lval in zip(self.model_graph.losses, losses_tr):
train_msg += str(lname) + ': ' + str(lval) + ' | '
eval_msg = 'EVALUATE: \n'
for lname, lval in zip(self.model_graph.losses, losses_eval):
eval_msg += str(lname) + ': ' + str(lval) + ' | '
print(train_msg)
print(eval_msg)
print()
if (cur_epoch == 1) or ((cur_epoch % const.SAVE_EPOCH == 0) and
(cur_epoch != 0)):
self.save(
self.session, saver,
self.model_graph.global_step_tensor.eval(self.session))
if self.config.plot:
self.reconst_samples_from_data(self.data_train,
self.session, cur_epoch)
self.session.run(self.model_graph.increment_cur_epoch_tensor)
# Early stopping
if (self.config.early_stopping
and early_stopper.stop(losses_eval[0])):
print('Early Stopping!')
break
if cur_epoch % const.COLAB_SAVE == 0:
if self.config.colab:
self.push_colab()
self.save(self.session, saver,
self.model_graph.global_step_tensor.eval(self.session))
if self.config.plot:
self.reconst_samples_from_data(self.data_train, self.session,
cur_epoch)
if self.config.colab:
self.push_colab()
z = self.encode(self.data_train.x)
self.config.latent_max = z.max().compute()
self.config.latent_min = z.min().compute()
self.config.latent_std = z.std().compute()
del z
return
''' ------------------------------------------------------------------------------
SET NETWORK PARAMS
------------------------------------------------------------------------------ '''
def build_model(self, height, width, num_channels):
self.config['height'] = height
self.config['width'] = width
self.config['num_channels'] = num_channels
self.graph = tf.Graph()
with self.graph.as_default():
self.model_graph = Factory(self.config.__dict__)
print(self.model_graph)
self.trainable_count = np.sum([
np.prod(v.get_shape().as_list())
for v in tf.trainable_variables()
])
print('\nNumber of trainable paramters', self.trainable_count)
self.test_graph()
''' -------------------------------------------------------------------------------
GOOGLE COLAB
------------------------------------------------------------------------------------- '''
if self.config.colab:
self.push_colab()
self.config.push_colab = self.push_colab
self.isBuild = True
utils.save_args(self.config.dict(), self.config.model_name,
self.config.summary_dir)
def test_graph(self):
with tf.Session(graph=self.graph) as session:
tf.set_random_seed(222222)
self.session = session
logger = Logger(self.session, self.config.summary_dir)
saver = tf.train.Saver()
if (self.config.restore and self.load(self.session, saver)):
num_epochs_trained = self.model_graph.cur_epoch_tensor.eval(
self.session)
print('EPOCHS trained: ', num_epochs_trained)
else:
print('Initializing Variables ...')
tf.global_variables_initializer().run()
print('random sample batch ...')
samples = self.model_graph.sample(session)
print('random sample shape {}'.format(samples.shape))
def reconst_samples_out_data(self):
with tf.Session(graph=self.graph) as session:
tf.set_random_seed(222222)
self.session = session
logger = Logger(self.session, self.config.summary_dir)
saver = tf.train.Saver()
if (self.config.restore and self.load(self.session, saver)):
num_epochs_trained = self.model_graph.cur_epoch_tensor.eval(
self.session)
print('EPOCHS trained: ', num_epochs_trained)
else:
print('Initializing Variables ...')
tf.global_variables_initializer().run()
print('random sample batch ...')
samples = self.model_graph.sample(session)
scaler = MinMaxScaler()
return scaler.fit_transform(samples.flatten().reshape(-1, 1).astype(
np.float32)).reshape(samples.shape)