def test_check_prefixes(self): """Verify the expected prefixes are present""" prefixes = ['k','p','c','o','f','g','s'] id_, parsed = check_parse(good_string) self.assertTrue(check_prefixes(parsed, prefixes)) id_, parsed = check_parse(bad_prefix) self.assertFalse(check_prefixes(parsed, prefixes)) self.fail("check duplicate ranks")
def test_check_prefixes(self): """Verify the expected prefixes are present""" prefixes = ['k', 'p', 'c', 'o', 'f', 'g', 's'] id_, parsed = check_parse(good_string) self.assertTrue(check_prefixes(parsed, prefixes)) id_, parsed = check_parse(bad_prefix) self.assertFalse(check_prefixes(parsed, prefixes)) self.fail("check duplicate ranks")
def test_check_gap(self): """check if a gap exists in a string""" id_, parsed = check_parse(good_string) self.assertTrue(check_gap(parsed)) id_, parsed = check_parse(good_trailing) self.assertTrue(check_gap, parsed) id_, parsed = check_parse(gap) self.assertFalse(check_gap(parsed))
def test_check_parse(self): """returns valid parsed or raises""" exp = ("1",["k__a","p__b","c__c","o__d","f__e","g__f","s__g"]) obs = check_parse(good_string) self.assertEqual(obs, exp) self.assertRaises(ParseError, check_parse, bad_string)
def test_check_parse(self): """returns valid parsed or raises""" exp = ("1", ["k__a", "p__b", "c__c", "o__d", "f__e", "g__f", "s__g"]) obs = check_parse(good_string) self.assertEqual(obs, exp) self.assertRaises(ParseError, check_parse, bad_string)
def test_check_n_levels(self): """requires N levels, or unclassified""" id_, parsed = check_parse(good_string) self.assertTrue(check_n_levels(parsed, 7)) self.assertFalse(check_n_levels(parsed, 8)) id_, parsed = check_parse(good_unclassified) self.assertTrue(check_n_levels(parsed, 7)) id_, parsed = check_parse(bad_unclassified1) self.assertFalse(check_n_levels(parsed, 7)) id_, parsed = check_parse(bad_unclassified2) self.assertFalse(check_n_levels(parsed, 7)) id_, parsed = check_parse(bad_unclassified3) self.assertFalse(check_n_levels(parsed, 7)) id_, parsed = check_parse(bad_unclassified4) self.assertFalse(check_n_levels(parsed, 7))