#!/usr/bin/env python
'''
Detailed noise simulations of gamma/bump parameter sweep. Noise levels are one
of the parameters in the simulation (0-300 pA in steps of 10 pA).
'''
from __future__ import absolute_import, print_function, division
from grid_cell_model.submitting.base.parsers import GenericSubmissionParser
from default_params import defaultParameters as dp
from param_sweep_noise import submitNoiseSweep, SweepParams
allowedPositions = ['EI-1_3', 'EI-3_1']
parser = GenericSubmissionParser()
parser.add_argument('--position',
type=str,
choices=allowedPositions,
required=True)
o = parser.parse_args()
p = dp.copy()
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = o.position
appName = '../common/simulation_stationary.py'
rtLimit = o.rtLimit or '02:30:00'
numCPU = o.nCPU
blocking = True
timePrefix = False
#!/usr/bin/env python '''Run a simple, single-neuron-from-each-population simulation.''' from __future__ import absolute_import, print_function, division from grid_cell_model.submitting.base.parsers import GenericSubmissionParser from grid_cell_model.submitting.arguments import ArgumentCreator from grid_cell_model.submitting.factory import SubmitterFactory from default_params import defaultParameters as dp parser = GenericSubmissionParser() o = parser.parse_args() p = dp.copy() # Submitting ENV = o.env simRootDir = o.where simLabel = 'single_neuron' appName = 'simulation_single_neuron.py' rtLimit = '00:02:00' if o.rtLimit is None else o.rtLimit numCPU = 1 blocking = True timePrefix = False numRepeat = 1 dry_run = o.dry_run p['master_seed'] = 123456 p['time'] = 10e3 if o.time is None else o.time # ms p['nthreads'] = 1 p['ntrials'] = 5 if o.ntrials is None else o.ntrials p['verbosity'] = o.verbosity
These simulations do the following:
- Bump is initialized, in the beginning [0, theta_start_t], by a very
strong place cell input.
- The bump moves, with a constant speed, following **vertical** direction.
for the duration of the simulation.
- The speed is controlled by IvelMax and dIvel parameters (currently
[0, 100] pA, with a step of 10 pA
- At the end of each run, spikes from E and I population are exported to
the output file.
'''
from grid_cell_model.submitting.base.parsers import GenericSubmissionParser
from param_sweep_noise import submitNoiseSweep, SweepParams
from default_params import defaultParameters as dp
parser = GenericSubmissionParser()
parser.add_argument('--EI_type', type=str, required=True,
choices=['EI-1_3', 'EI-3_1'],
help='Value of E and I coupling (g_AMPA_total and '
'g_GABA_total)')
o = parser.parse_args()
p = dp.copy()
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = o.EI_type
appName = 'simulation_velocity.py'
rtLimit = o.rtLimit or '12:00:00'
#!/usr/bin/env python '''Run a simple, single-neuron-from-each-population simulation.''' from __future__ import absolute_import, print_function, division from grid_cell_model.submitting.base.parsers import GenericSubmissionParser from grid_cell_model.submitting.arguments import ArgumentCreator from grid_cell_model.submitting.factory import SubmitterFactory from default_params import defaultParameters as dp parser = GenericSubmissionParser() o = parser.parse_args() p = dp.copy() # Submitting ENV = o.env simRootDir = o.where simLabel = 'single_neuron' appName = 'simulation_single_neuron.py' rtLimit = '00:02:00' if o.rtLimit is None else o.rtLimit numCPU = 1 blocking = True timePrefix = False numRepeat = 1 dry_run = o.dry_run p['master_seed'] = 123456 p['time'] = 10e3 if o.time is None else o.time # ms p['nthreads'] = 1 p['ntrials'] = 5 if o.ntrials is None else o.ntrials p['verbosity'] = o.verbosity
These simulations do the following:
- Bump is initialized, in the beginning [0, theta_start_t], by a very
strong place cell input.
- The bump moves, with a constant speed, following **vertical** direction.
for the duration of the simulation.
- The speed is controlled by IvelMax and dIvel parameters (currently
[0, 100] pA, with a step of 10 pA
- At the end of each run, spikes from E and I population are exported to
the output file.
'''
from grid_cell_model.submitting.base.parsers import GenericSubmissionParser
from param_sweep_noise import submitNoiseSweep, SweepParams
from default_params import defaultParameters as dp
parser = GenericSubmissionParser()
parser.add_argument('--EI_type',
type=str,
required=True,
choices=['EI-1_3', 'EI-3_1'],
help='Value of E and I coupling (g_AMPA_total and '
'g_GABA_total)')
o = parser.parse_args()
p = dp.copy()
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = o.EI_type
appName = 'simulation_velocity.py'
#!/usr/bin/env python
'''
Detailed noise simulations of gamma/bump parameter sweep. Noise levels are one
of the parameters in the simulation (0-300 pA in steps of 10 pA).
'''
from __future__ import absolute_import, print_function, division
from grid_cell_model.submitting.base.parsers import GenericSubmissionParser
from default_params import defaultParameters as dp
from param_sweep_noise import submitNoiseSweep, SweepParams
allowedPositions = ['EI-1_3', 'EI-3_1']
parser = GenericSubmissionParser()
parser.add_argument('--position',type=str, choices=allowedPositions,
required=True)
o = parser.parse_args()
p = dp.copy()
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = o.position
appName = '../common/simulation_stationary.py'
rtLimit = o.rtLimit or '02:30:00'
numCPU = o.nCPU
blocking = True
timePrefix = False
numRepeat = 1
