def test_spec_validation(self):
# pylint: disable=E1101
with pytest.raises(ValueError):
mod.SpecProcessor('3', 'bad spec')
with pytest.raises(ValueError):
mod.SpecProcessor('3', 'bad spec')
def test_negative_check(self):
# check simplest spec
self.spec_processor = mod.SpecProcessor(['3'], 'rec_incl_spec')
self.assertFalse(self.spec_processor.has_negatives)
# check more complex spec
sp2 = mod.SpecProcessor(['3:5', '0', '18:', ':'], 'rec_incl_spec')
self.assertFalse(sp2.has_negatives)
# check negative spec
sp2 = mod.SpecProcessor(['3:5'], 'rec_incl_spec')
sp3 = mod.SpecProcessor(['-1'], 'rec_incl_spec')
self.assertTrue(sp3.has_negatives)
def test_adjust_one_spec(self):
self.sp = mod.SpecProcessor(['5'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=80)
self.assertEqual(self.sp.adj_spec, self.sp.orig_spec)
self.sp.spec_adjuster()
self.assertEqual(self.sp.adj_spec, self.sp.orig_spec)
self.sp = mod.SpecProcessor(['5:15'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=80)
self.assertEqual(self.sp.adj_spec, self.sp.orig_spec)
self.sp = mod.SpecProcessor(['5:9', '10:'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=80)
self.assertEqual(self.sp.adj_spec, self.sp.orig_spec)
self.sp = mod.SpecProcessor([':'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=80)
self.assertEqual(self.sp.adj_spec, self.sp.orig_spec)
self.sp = mod.SpecProcessor(['-1'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=80)
self.assertEqual(self.sp.adj_spec, ['80'])
self.sp = mod.SpecProcessor(['-20:-10'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=80)
self.assertEqual(self.sp.adj_spec, ['61:71'])
self.sp = mod.SpecProcessor(['-100:'], 'rec_inc_spec')
self.sp.spec_adjuster(loc_max=1234567890)
self.assertEqual(self.sp.adj_spec, ['1234567791:'])
def simple_runner(self, spec, loc):
""" Creates the Spec Processor object with default settings for the
specification and record length.
"""
spec_name = 'foo'
loc_max = 4 # max length - based on 0 offset
self.sp = mod.SpecProcessor(spec, spec_name)
self.sp.spec_adjuster(loc_max)
return self.sp.spec_evaluator(loc)
def test_spec_validator(self):
sp5 = mod.SpecProcessor(['3:5'], 'rec_incl_spec')
self.assertTrue(sp5._spec_validator(['3']))
self.assertTrue(sp5._spec_validator(['3:8']))
self.assertTrue(sp5._spec_validator([':']))
self.assertTrue(sp5._spec_validator(['3:5', '7', '10:', ':', ':19']))
self.assertRaises(ValueError, sp5._spec_validator, [''])
self.assertRaises(ValueError, sp5._spec_validator, 'a')
self.assertRaises(ValueError, sp5._spec_validator, ['a'])
self.assertRaises(ValueError, sp5._spec_validator, ['-'])
self.assertRaises(ValueError, sp5._spec_validator, [''])
self.assertRaises(ValueError, sp5._spec_validator, ['5:1'])
self.assertRaises(ValueError, sp5._spec_validator, ['1:10:20'])
def test_spec_validator(self):
sp5 = mod.SpecProcessor(['3:5'], 'rec_incl_spec')
assert sp5._spec_validator(['3'])
assert sp5._spec_validator(['3:8'])
assert sp5._spec_validator([':'])
assert sp5._spec_validator(['3:5', '7', '10:', ':', ':19'])
# pylint: disable=E1101
with pytest.raises(ValueError):
sp5._spec_validator([''])
with pytest.raises(ValueError):
sp5._spec_validator('a')
with pytest.raises(ValueError):
sp5._spec_validator(['a'])
with pytest.raises(ValueError):
sp5._spec_validator(['-'])
with pytest.raises(ValueError):
sp5._spec_validator([''])
with pytest.raises(ValueError):
sp5._spec_validator(['5:1'])
with pytest.raises(ValueError):
sp5._spec_validator(['1:10:20'])
def test_spec_evaluator(self):
sp4 = mod.SpecProcessor(['3:5'], 'rec_incl_spec')
def simple_setup(self, spec, spec_name, loc_max):
self.sp = mod.SpecProcessor(spec, spec_name)
self.sp.spec_adjuster(loc_max)
def setUp(self):
self.sp = mod.SpecProcessor([':'], 'foo')
def setUp(self):
self.sp = mod.SpecProcessor(['3'], 'rec_inc_spec')
def setup_method(self, method):
self.sp = mod.SpecProcessor(['3'], 'rec_inc_spec')
def setup_method(self, method):
self.sp = mod.SpecProcessor([':'], 'foo')