def __init__(self, geSource, forcedHeaderDict={}):
FileFormatComposer.__init__(self, geSource)
self._headerDict = copy(Gtrack.DEFAULT_HEADER_DICT)
self._forcedHeaderDict = forcedHeaderDict
# Also stores bounding regions and value dimensions in GEDependentAttributesHolder, if present
self._anyGeHasGenome = False
for ge in self._geSource:
if ge.genome is not None:
self._anyGeHasGenome = True
def __init__(self, geSource):
FileFormatComposer.__init__(self, geSource)
self._prefixSet = set(self._geSource.getPrefixList())
self._bedColumnsDict = OrderedDict([(colName, ColumnInfo(colIdx, defaultVal, checkExtra)) for \
colName, colIdx, defaultVal, checkExtra in self._BED_COLUMNS_LIST])
self._init()
def __init__(self, geSource):
FileFormatComposer.__init__(self, geSource)
self._gffColumnsDict = OrderedDict([(colName, ColumnInfo(colIdx, defaultVal)) for \
colName, colIdx, defaultVal in self._GFF_COLUMNS_LIST])
