def _composeBoundingRegionLine(self, boundingRegionTuple):
region = copy(boundingRegionTuple.region)
if self._headerDict["1-indexed"]:
region.start = region.start + 1 if region.start is not None else None
region.end = region.end + 1 if region.end is not None else None
if self._headerDict["end inclusive"]:
region.end = region.end - 1 if region.end is not None else None
brLinePartList = [
(Gtrack.convertNameToGtrack(attr), getattr(region, attr)) for attr in ["genome", "chr", "start", "end"]
]
return (
"####"
+ "; ".join(
k + "=" + self._formatPhraseWithCorrectChrUsage(str(v), useUrlEncoding=True, notAllowedChars="=;#\t")
for k, v in brLinePartList
if v is not None
)
+ os.linesep
)
def _getGtrackColumnsFromHbColumns(self, hbColumns):
return [Gtrack.convertNameToGtrack(col) for col in hbColumns if col != "weights"]
