def __init__(self, parent=None, **kw):
BasePopup.__init__(self, parent, "compact_bar_settings", "Compact Bar"
"Plot")
self.bar_cols = LabelledSpinBox(self,
text="Columns Per Page",
minimum=1,
step=1)
self.bar_rows = LabelledSpinBox(self,
text="Rows Per Page",
minimum=1,
step=1)
self.x_tick_font = FontComboBox(self, "X Tick Font")
self.x_tick_font_size = LabelledSpinBox(self,
"X Tick Font Size",
minimum=0,
step=1)
self.x_tick_rotation = LabelledSpinBox(self,
"X Tick Rotation",
minimum=0,
maximum=360,
step=1)
self.x_tick_weight = LabelledCombobox(self,
"X Tick Font Weight",
items=font_weights)
self.shade_unassigned_checkbox = LabelledCheckbox(
self, "Shade Unassigned?")
self.unassigned_shade_alpha = LabelledDoubleSpinBox(self,
"Unassigned Shade "
"Transparency",
minimum=0,
maximum=1,
step=0.1)
self.layout().addWidget(self.bar_cols, 0, 0)
self.layout().addWidget(self.bar_rows, 1, 0)
self.layout().addWidget(self.x_tick_font_size, 2, 0)
self.layout().addWidget(self.x_tick_font, 3, 0)
self.layout().addWidget(self.x_tick_rotation, 4, 0)
self.layout().addWidget(self.x_tick_weight, 5, 0)
self.layout().addWidget(self.shade_unassigned_checkbox, 6, 0)
self.layout().addWidget(self.unassigned_shade_alpha, 7, 0)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 8, 0)
self.get_values()
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Extended Bar Plot",
settings_key=["extended_bar_settings"])
self.bar_cols = LabelledSpinBox(self,
text="Columns Per Page",
minimum=1,
step=1)
self.bar_rows = LabelledSpinBox(self,
text="Rows Per Page",
minimum=1,
step=1)
self.x_tick_font = FontComboBox(self, "X Tick Font")
self.x_tick_font_size = LabelledSpinBox(self,
"X Tick Font Size",
minimum=0,
step=1)
self.x_tick_rotation = LabelledSpinBox(self,
"X Tick Rotation",
minimum=0,
maximum=90,
step=1)
self.x_tick_font_weight = LabelledCombobox(self,
"X Tick Font Weight",
items=font_weights)
self.x_tick_colour = LabelledCheckbox(self, "Colour X Ticks?")
# adds widgets
self.layout().addWidget(self.bar_cols, 0, 0)
self.layout().addWidget(self.bar_rows, 1, 0)
self.layout().addWidget(self.x_tick_font_size, 2, 0)
self.layout().addWidget(self.x_tick_font, 3, 0)
self.layout().addWidget(self.x_tick_rotation, 4, 0)
self.layout().addWidget(self.x_tick_font_weight, 5, 0)
self.layout().addWidget(self.x_tick_colour, 6, 0)
# buttons
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
# sets widget in tab
self.layout().addWidget(self.buttonBox, 8, 0)
self.get_values()
class ExtendedBarPopup(BasePopup):
"""
A popup for setting Extended Bar Plot specific settings in the Farseer-NMR
configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Extended Bar Plot",
settings_key=["extended_bar_settings"])
self.bar_cols = LabelledSpinBox(self,
text="Columns Per Page",
minimum=1,
step=1)
self.bar_rows = LabelledSpinBox(self,
text="Rows Per Page",
minimum=1,
step=1)
self.x_tick_font = FontComboBox(self, "X Tick Font")
self.x_tick_font_size = LabelledSpinBox(self,
"X Tick Font Size",
minimum=0,
step=1)
self.x_tick_rotation = LabelledSpinBox(self,
"X Tick Rotation",
minimum=0,
maximum=90,
step=1)
self.x_tick_font_weight = LabelledCombobox(self,
"X Tick Font Weight",
items=font_weights)
self.x_tick_colour = LabelledCheckbox(self, "Colour X Ticks?")
# adds widgets
self.layout().addWidget(self.bar_cols, 0, 0)
self.layout().addWidget(self.bar_rows, 1, 0)
self.layout().addWidget(self.x_tick_font_size, 2, 0)
self.layout().addWidget(self.x_tick_font, 3, 0)
self.layout().addWidget(self.x_tick_rotation, 4, 0)
self.layout().addWidget(self.x_tick_font_weight, 5, 0)
self.layout().addWidget(self.x_tick_colour, 6, 0)
# buttons
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
# sets widget in tab
self.layout().addWidget(self.buttonBox, 8, 0)
self.get_values()
def get_defaults(self):
# check
self.x_tick_colour.setChecked(self.defaults["x_ticks_color_flag"])
# values
self.bar_cols.setValue(self.defaults["cols_page"])
self.bar_rows.setValue(self.defaults["rows_page"])
self.x_tick_font_size.setValue(self.defaults["x_ticks_fs"])
self.x_tick_rotation.setValue(self.defaults["x_ticks_rot"])
# select
self.x_tick_font.select(self.defaults["x_ticks_fn"])
self.x_tick_font_weight.select(self.defaults["x_ticks_weight"])
def get_values(self):
# checked
self.x_tick_colour.setChecked(
self.local_variables["x_ticks_color_flag"])
# value
self.bar_cols.setValue(self.local_variables["cols_page"])
self.bar_rows.setValue(self.local_variables["rows_page"])
self.x_tick_font_size.setValue(self.local_variables["x_ticks_fs"])
self.x_tick_rotation.setValue(self.local_variables["x_ticks_rot"])
# select
self.x_tick_font.select(self.local_variables["x_ticks_fn"])
self.x_tick_font_weight.select(self.local_variables["x_ticks_weight"])
def set_values(self):
# checked
self.local_variables[
"x_ticks_color_flag"] = self.x_tick_colour.isChecked()
# value
self.local_variables["cols_page"] = self.bar_cols.field.value()
self.local_variables["rows_page"] = self.bar_rows.field.value()
self.local_variables["x_ticks_fs"] = self.x_tick_font_size.field.value(
)
self.local_variables["x_ticks_rot"] = self.x_tick_rotation.field.value(
)
# text
self.local_variables["x_ticks_fn"] = str(
self.x_tick_font.fields.currentText())
self.local_variables["x_ticks_weight"] = str(
self.x_tick_font_weight.fields.currentText())
self.accept()
def __init__(self, parent=None, **kw):
BasePopup.__init__(self, parent, "bar_plot_settings", "Bar Plot")
self.meas_bar_colour = ColourBox(self, text="Measured Bar Colour")
self.apply_status = LabelledCheckbox(self, text="Apply Peak Status")
self.missing_bar_colour = ColourBox(self, text="Missing Bar Colour")
self.unassigned_bar_colour = ColourBox(self,
text="Unassigned Bar Colour")
self.bar_width = LabelledDoubleSpinBox(self,
text="Bar Width",
minimum=0,
maximum=1,
step=0.1)
self.bar_alpha = LabelledDoubleSpinBox(self,
text="Bar Transparency",
minimum=0,
maximum=1,
step=0.1)
self.bar_linewidth = LabelledDoubleSpinBox(self,
text="Bar Line Width",
minimum=0,
step=0.1)
self.bar_threshold = LabelledCheckbox(self, "Apply Stdev Threshold")
self.bar_threshold_colour = ColourBox(self, "Stdev Threshold Colour")
self.bar_threshold_alpha = LabelledDoubleSpinBox(
self, "Stdev Threshold Alpha", minimum=0, maximum=1, step=0.1)
self.bar_threshold_linewidth = LabelledDoubleSpinBox(
self, text="Stdev Threshold Line Width", minimum=0, step=0.1)
self.user_mark_font_size = LabelledSpinBox(self,
"Mark Font Size",
minimum=0,
step=1)
self.markProlines = LabelledCheckbox(self, text="Mark Prolines")
self.proline_marker = LabelledLineEdit(self, text="Proline Marker")
self.user_details = LabelledCheckbox(self, "Mark User Details")
self.colour_user_details = LabelledCheckbox(self,
"Colour User Details")
self.user_markers_button = QPushButton("User Defined Markers", self)
self.user_markers_button.clicked.connect(self.launch_user_marker_popup)
self.layout().addWidget(self.apply_status, 0, 0)
self.layout().addWidget(self.meas_bar_colour, 1, 0)
self.layout().addWidget(self.missing_bar_colour, 2, 0)
self.layout().addWidget(self.unassigned_bar_colour, 3, 0)
self.layout().addWidget(self.bar_width, 4, 0)
self.layout().addWidget(self.bar_alpha, 5, 0)
self.layout().addWidget(self.bar_linewidth, 6, 0)
self.layout().addWidget(self.bar_threshold, 7, 0)
self.layout().addWidget(self.bar_threshold_linewidth, 0, 1)
self.layout().addWidget(self.bar_threshold_colour, 1, 1)
self.layout().addWidget(self.bar_threshold_alpha, 2, 1)
self.layout().addWidget(self.markProlines, 3, 1)
self.layout().addWidget(self.proline_marker, 4, 1)
self.layout().addWidget(self.user_details, 5, 1)
self.layout().addWidget(self.colour_user_details, 6, 1)
self.layout().addWidget(self.user_markers_button, 7, 1)
self.layout().addWidget(self.user_mark_font_size, 8, 1)
# add OK CANCEL RESTORE buttons
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 9, 1, 1, 1)
self.get_values()
class BarPlotPopup(BasePopup):
"""
A popup for setting Bar Plot specific settings in the Farseer-NMR
configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.launch_user_marker_popup
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self, parent, "bar_plot_settings", "Bar Plot")
self.meas_bar_colour = ColourBox(self, text="Measured Bar Colour")
self.apply_status = LabelledCheckbox(self, text="Apply Peak Status")
self.missing_bar_colour = ColourBox(self, text="Missing Bar Colour")
self.unassigned_bar_colour = ColourBox(self,
text="Unassigned Bar Colour")
self.bar_width = LabelledDoubleSpinBox(self,
text="Bar Width",
minimum=0,
maximum=1,
step=0.1)
self.bar_alpha = LabelledDoubleSpinBox(self,
text="Bar Transparency",
minimum=0,
maximum=1,
step=0.1)
self.bar_linewidth = LabelledDoubleSpinBox(self,
text="Bar Line Width",
minimum=0,
step=0.1)
self.bar_threshold = LabelledCheckbox(self, "Apply Stdev Threshold")
self.bar_threshold_colour = ColourBox(self, "Stdev Threshold Colour")
self.bar_threshold_alpha = LabelledDoubleSpinBox(
self, "Stdev Threshold Alpha", minimum=0, maximum=1, step=0.1)
self.bar_threshold_linewidth = LabelledDoubleSpinBox(
self, text="Stdev Threshold Line Width", minimum=0, step=0.1)
self.user_mark_font_size = LabelledSpinBox(self,
"Mark Font Size",
minimum=0,
step=1)
self.markProlines = LabelledCheckbox(self, text="Mark Prolines")
self.proline_marker = LabelledLineEdit(self, text="Proline Marker")
self.user_details = LabelledCheckbox(self, "Mark User Details")
self.colour_user_details = LabelledCheckbox(self,
"Colour User Details")
self.user_markers_button = QPushButton("User Defined Markers", self)
self.user_markers_button.clicked.connect(self.launch_user_marker_popup)
self.layout().addWidget(self.apply_status, 0, 0)
self.layout().addWidget(self.meas_bar_colour, 1, 0)
self.layout().addWidget(self.missing_bar_colour, 2, 0)
self.layout().addWidget(self.unassigned_bar_colour, 3, 0)
self.layout().addWidget(self.bar_width, 4, 0)
self.layout().addWidget(self.bar_alpha, 5, 0)
self.layout().addWidget(self.bar_linewidth, 6, 0)
self.layout().addWidget(self.bar_threshold, 7, 0)
self.layout().addWidget(self.bar_threshold_linewidth, 0, 1)
self.layout().addWidget(self.bar_threshold_colour, 1, 1)
self.layout().addWidget(self.bar_threshold_alpha, 2, 1)
self.layout().addWidget(self.markProlines, 3, 1)
self.layout().addWidget(self.proline_marker, 4, 1)
self.layout().addWidget(self.user_details, 5, 1)
self.layout().addWidget(self.colour_user_details, 6, 1)
self.layout().addWidget(self.user_markers_button, 7, 1)
self.layout().addWidget(self.user_mark_font_size, 8, 1)
# add OK CANCEL RESTORE buttons
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 9, 1, 1, 1)
self.get_values()
def launch_user_marker_popup(self):
UserMarksPopup(
variables=self.local_variables["user_marks_dict"]).launch()
def get_defaults(self):
# check boxes
self.apply_status.setChecked(self.defaults["status_color_flag"])
self.bar_threshold.setChecked(self.defaults["threshold_flag"])
self.markProlines.setChecked(self.defaults["mark_prolines_flag"])
self.user_details.setChecked(self.defaults["mark_user_details_flag"])
self.colour_user_details.setChecked(
self.defaults["color_user_details_flag"])
# colours
self.meas_bar_colour.get_colour(self.defaults["measured_color"])
self.missing_bar_colour.get_colour(self.defaults["missing_color"])
self.unassigned_bar_colour.get_colour(
self.defaults["unassigned_color"])
self.bar_threshold_colour.get_colour(self.defaults["threshold_color"])
# values
self.bar_width.setValue(self.defaults["bar_width"])
self.bar_alpha.setValue(self.defaults["bar_alpha"])
self.bar_linewidth.setValue(self.defaults["bar_linewidth"])
self.bar_threshold_linewidth.setValue(
self.defaults["threshold_linewidth"])
self.bar_threshold_alpha.setValue(self.defaults["threshold_alpha"])
self.user_mark_font_size.setValue(self.defaults["mark_fontsize"])
# text
self.proline_marker.field.setText(
self.defaults["mark_prolines_symbol"])
def get_values(self):
# check boxes
self.apply_status.setChecked(self.local_variables["status_color_flag"])
self.bar_threshold.setChecked(self.local_variables["threshold_flag"])
self.markProlines.setChecked(
self.local_variables["mark_prolines_flag"])
self.user_details.setChecked(
self.local_variables["mark_user_details_flag"])
self.colour_user_details.setChecked(
self.local_variables["color_user_details_flag"])
# colours
self.meas_bar_colour.get_colour(self.local_variables["measured_color"])
self.missing_bar_colour.get_colour(
self.local_variables["missing_color"])
self.unassigned_bar_colour.get_colour(
self.local_variables["unassigned_color"])
self.bar_threshold_colour.get_colour(
self.local_variables["threshold_color"])
# values
self.bar_width.setValue(self.local_variables["bar_width"])
self.bar_alpha.setValue(self.local_variables["bar_alpha"])
self.bar_linewidth.setValue(self.local_variables["bar_linewidth"])
self.bar_threshold_alpha.setValue(
self.local_variables["threshold_alpha"])
self.bar_threshold_linewidth.setValue(
self.local_variables["threshold_linewidth"])
self.user_mark_font_size.setValue(
self.local_variables["mark_fontsize"])
# text
self.proline_marker.field.setText(
self.local_variables["mark_prolines_symbol"])
def set_values(self):
# check boxes
self.local_variables[
"status_color_flag"] = self.apply_status.isChecked()
self.local_variables["threshold_flag"] = self.bar_threshold.isChecked()
self.local_variables[
"mark_prolines_flag"] = self.markProlines.isChecked()
self.local_variables[
"mark_user_details_flag"] = self.user_details.isChecked()
self.local_variables[
"color_user_details_flag"] = self.colour_user_details.isChecked()
# colours
self.local_variables[
"measured_color"] = self.meas_bar_colour.fields.currentText()
self.local_variables[
"missing_color"] = self.missing_bar_colour.fields.currentText()
self.local_variables[
"unassigned_color"] = self.unassigned_bar_colour.fields.currentText(
)
self.local_variables[
"threshold_color"] = self.bar_threshold_colour.fields.currentText(
)
# values
self.local_variables["bar_width"] = self.bar_width.field.value()
self.local_variables["bar_alpha"] = self.bar_alpha.field.value()
self.local_variables["bar_linewidth"] = self.bar_linewidth.field.value(
)
self.local_variables[
"threshold_alpha"] = self.bar_threshold_alpha.field.value()
self.local_variables[
"threshold_linewidth"] = self.bar_threshold_linewidth.field.value(
)
self.local_variables[
"mark_fontsize"] = self.user_mark_font_size.field.value()
# text
self.local_variables["mark_prolines_symbol"] = str(
self.proline_marker.field.text())
#
self.accept()
def __init__(self, parent=None, **kw):
BasePopup.__init__(
self,
parent,
title="Scatter Flower Plot",
settings_key=["cs_scatter_flower_settings"]
)
self.x_label = LabelledLineEdit(self, "X Label")
self.y_label = LabelledLineEdit(self, "Y Label")
self.mksize = LabelledSpinBox(self, "Mark Size", minimum=0, step=1)
self.color_grad = LabelledCheckbox(self, "Colour Gradient")
self.color_start = ColourBox(self, text="Mark Start Colour")
self.color_end = ColourBox(self, text="Mark End Colour")
self.color_list = LabelledLineEdit(self, "Colour List")
self.x_label_fn = FontComboBox(self, "X Label Font")
self.x_label_fs = LabelledSpinBox(self, "X Label Font Size", minimum=0, step=1)
self.x_label_pad = LabelledDoubleSpinBox(
self,
"X Label Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.x_label_weight = LabelledCombobox(self, text="X Label Font Weight", items=font_weights)
self.y_label_fn = FontComboBox(self, "Y Label Font")
self.y_label_fs = LabelledSpinBox(self, "Y Label Font Size", minimum=0, step=1)
self.y_label_pad = LabelledDoubleSpinBox(
self,
"Y Label Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.y_label_weight = LabelledCombobox(
self,
text="Y Label Font Weight",
items=font_weights
)
self.x_ticks_fn = FontComboBox(self, "X Tick Font")
self.x_ticks_fs = LabelledSpinBox(self, "X Tick Font Size", minimum=0, step=1)
self.x_ticks_pad = LabelledDoubleSpinBox(
self,
"X Tick Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.x_ticks_weight = LabelledCombobox(self, text="X Tick Weight", items=font_weights)
self.x_ticks_rot = LabelledSpinBox(
self,
"X Tick Rotation",
minimum=0,
maximum=360,
step=1
)
self.y_ticks_fn = FontComboBox(self, "Y Tick Font")
self.y_ticks_fs = LabelledSpinBox(self, "Y Tick Font Size", minimum=0, step=1)
self.y_ticks_pad = LabelledDoubleSpinBox(
self,
"Y Tick Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.y_ticks_weight = LabelledCombobox(self, text="Y Tick Weight", items=font_weights)
self.y_ticks_rot = LabelledSpinBox(
self,
"Y Tick Rotation",
minimum=0,
maximum=360,
step=1
)
self.res_label_color = ColourBox(self, text="Residue Label Colour")
# layout
self.layout().addWidget(self.x_label, 0, 0)
self.layout().addWidget(self.y_label, 1, 0)
self.layout().addWidget(self.mksize, 2, 0)
self.layout().addWidget(self.color_grad, 3, 0)
self.layout().addWidget(self.color_start, 4, 0)
self.layout().addWidget(self.color_end, 5, 0)
self.layout().addWidget(self.x_label_fn, 6, 0)
self.layout().addWidget(self.x_label_fs, 7, 0)
self.layout().addWidget(self.color_list, 8, 0)
self.layout().addWidget(self.res_label_color, 8, 1)
self.layout().addWidget(self.x_label_pad, 0, 1)
self.layout().addWidget(self.x_label_weight, 1, 1)
self.layout().addWidget(self.y_label_fn, 2, 1)
self.layout().addWidget(self.y_label_fs, 3, 1)
self.layout().addWidget(self.y_label_pad, 4, 1)
self.layout().addWidget(self.y_label_weight, 5, 1)
self.layout().addWidget(self.x_ticks_fn, 6, 1)
self.layout().addWidget(self.x_ticks_fs, 7, 1)
self.layout().addWidget(self.x_ticks_pad, 0, 2)
self.layout().addWidget(self.x_ticks_weight, 1, 2)
self.layout().addWidget(self.x_ticks_rot, 2, 2)
self.layout().addWidget(self.y_ticks_fn, 3, 2)
self.layout().addWidget(self.y_ticks_fs, 4, 2)
self.layout().addWidget(self.y_ticks_pad, 5, 2)
self.layout().addWidget(self.y_ticks_weight, 6, 2)
self.layout().addWidget(self.y_ticks_rot, 7, 2)
self.buttonBox = QDialogButtonBox(
QDialogButtonBox.Ok |
QDialogButtonBox.Cancel |
QDialogButtonBox.RestoreDefaults
)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(QDialogButtonBox.RestoreDefaults).clicked.connect(self.get_defaults)
self.layout().addWidget(self.buttonBox, 9, 0, 1, 2)
self.get_values()
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Scatter Plot",
settings_key=["cs_scatter_settings"])
self.cs_scatter_cols_page = LabelledSpinBox(self,
"Columns Per Page",
minimum=1,
step=1)
self.cs_scatter_rows_page = LabelledSpinBox(self,
"Rows Per Page",
minimum=1,
step=1)
self.cs_scatter_x_label = LabelledLineEdit(self, "X Label")
self.cs_scatter_y_label = LabelledLineEdit(self, "Y Label")
self.cs_scatter_mksize = LabelledSpinBox(self,
"Mark Size",
minimum=0,
step=1)
self.cs_scatter_scale = LabelledDoubleSpinBox(self,
"Scale",
minimum=0,
step=0.01)
self.cs_scatter_mk_type = LabelledCombobox(self,
text="Mark Type",
items=['color', 'shape'])
self.cs_scatter_mk_start_color = ColourBox(self,
text="Mark Start Colour")
self.cs_scatter_mk_end_color = ColourBox(self, text="Mark End Colour")
self.cs_scatter_markers = LabelledLineEdit(self, "Sequential Markers")
self.cs_scatter_mk_color = LabelledLineEdit(self, text="Mark Colours")
self.cs_scatter_mk_missing_color = ColourBox(self,
"Missing Mark Colour")
self.cs_scatter_mk_edgecolors = LabelledLineEdit(
self, "Marker Edge Colours")
self.cs_scatter_hide_missing = LabelledCheckbox(
self, "Hide Missing Data Points")
# layout
self.layout().addWidget(self.cs_scatter_cols_page, 0, 0)
self.layout().addWidget(self.cs_scatter_rows_page, 1, 0)
self.layout().addWidget(self.cs_scatter_x_label, 2, 0)
self.layout().addWidget(self.cs_scatter_y_label, 3, 0)
self.layout().addWidget(self.cs_scatter_mksize, 4, 0)
self.layout().addWidget(self.cs_scatter_scale, 5, 0)
self.layout().addWidget(self.cs_scatter_mk_type, 6, 0)
self.layout().addWidget(self.cs_scatter_mk_start_color, 0, 1)
self.layout().addWidget(self.cs_scatter_mk_end_color, 1, 1)
self.layout().addWidget(self.cs_scatter_markers, 2, 1)
self.layout().addWidget(self.cs_scatter_mk_color, 3, 1)
self.layout().addWidget(self.cs_scatter_mk_edgecolors, 4, 1)
self.layout().addWidget(self.cs_scatter_mk_missing_color, 5, 1)
self.layout().addWidget(self.cs_scatter_hide_missing, 6, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 7, 0, 1, 2)
self.get_values()
class GeneralResidueEvolution(BasePopup):
"""
A popup for setting General Residue Evolution Plot specific settings in the
Farseer-NMR configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Residue Evolution Plot",
settings_key=["revo_settings"])
self.do_revo_fit = LabelledCheckbox(self,
text="Fit Parameter Evolution")
self.revo_subtitle_fn = FontComboBox(self, text="Subtitle Font")
self.revo_subtitle_fs = LabelledSpinBox(self,
text="Subtitle Font Size",
minimum=0,
step=1)
self.revo_subtitle_pad = LabelledDoubleSpinBox(self,
text="Subtitle Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_subtitle_weight = LabelledCombobox(
self, text="Subtitle Font Weight", items=font_weights)
self.revo_x_label_fn = FontComboBox(self, text="X Label Font")
self.revo_x_label_fs = LabelledSpinBox(self,
text="X Label Font Size",
minimum=0,
step=1)
self.revo_x_label_pad = LabelledDoubleSpinBox(self,
text="X Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_x_label_weight = LabelledCombobox(self,
text="X Label Font Weight",
items=font_weights)
self.revo_y_label_fn = FontComboBox(self, text="Y Label Font Size")
self.revo_y_label_fs = LabelledSpinBox(self,
text="Y Label Font Size",
minimum=0,
step=1)
self.revo_y_label_pad = LabelledSpinBox(self,
text="Y Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_y_label_weight = LabelledCombobox(self,
text="Y Label Font Weight",
items=font_weights)
self.revo_x_ticks_fn = FontComboBox(self, text="X Tick Font")
self.revo_x_ticks_fs = LabelledSpinBox(self,
text="X Tick Font Size",
minimum=0,
step=1)
self.revo_x_ticks_pad = LabelledDoubleSpinBox(self,
text="X Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_x_ticks_weight = LabelledCombobox(self,
text="X Tick Font Weight",
items=font_weights)
self.revo_x_ticks_rotation = LabelledDoubleSpinBox(
self, text="X Tick Rotation", minimum=0, maximum=360, step=1)
self.revo_y_ticks_fn = FontComboBox(self, text="Y Tick Font")
self.revo_y_ticks_fs = LabelledSpinBox(self,
text="Y Tick Font Size",
minimum=0,
step=1)
self.revo_y_ticks_pad = LabelledDoubleSpinBox(self,
text="Y Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_y_ticks_weight = LabelledCombobox(self,
text="Y Tick Font Weight",
items=font_weights)
self.revo_y_ticks_rot = LabelledSpinBox(self,
text="Y Tick Rotation",
minimum=0,
maximum=360,
step=1)
self.titration_x_values = LabelledLineEdit(self,
text="Titration X Values")
# add widgets
self.layout().addWidget(self.revo_subtitle_fn, 0, 0)
self.layout().addWidget(self.revo_subtitle_fs, 1, 0)
self.layout().addWidget(self.revo_subtitle_pad, 2, 0)
self.layout().addWidget(self.revo_subtitle_weight, 3, 0)
self.layout().addWidget(self.revo_x_label_fn, 4, 0)
self.layout().addWidget(self.revo_x_label_fs, 5, 0)
self.layout().addWidget(self.revo_x_label_pad, 6, 0)
self.layout().addWidget(self.revo_x_label_weight, 7, 0)
self.layout().addWidget(self.revo_y_label_fn, 8, 0)
self.layout().addWidget(self.revo_y_label_fs, 9, 0)
self.layout().addWidget(self.revo_y_label_pad, 10, 0)
self.layout().addWidget(self.titration_x_values, 11, 0)
self.layout().addWidget(self.revo_y_label_weight, 0, 1)
self.layout().addWidget(self.revo_x_ticks_fn, 1, 1)
self.layout().addWidget(self.revo_x_ticks_fs, 2, 1)
self.layout().addWidget(self.revo_x_ticks_pad, 3, 1)
self.layout().addWidget(self.revo_x_ticks_weight, 4, 1)
self.layout().addWidget(self.revo_x_ticks_rotation, 5, 1)
self.layout().addWidget(self.revo_y_ticks_fn, 6, 1)
self.layout().addWidget(self.revo_y_ticks_fs, 7, 1)
self.layout().addWidget(self.revo_y_ticks_pad, 8, 1)
self.layout().addWidget(self.revo_y_ticks_weight, 9, 1)
self.layout().addWidget(self.revo_y_ticks_rot, 10, 1)
self.layout().addWidget(self.do_revo_fit, 11, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 12, 0, 1, 2)
self.get_values()
def get_defaults(self):
# checkbox
self.do_revo_fit.checkBox.setChecked(
self.defaults["perform_resevo_fitting"])
# dropdown list
self.revo_subtitle_fn.select(self.defaults["subtitle_fn"])
self.revo_subtitle_weight.select(self.defaults["subtitle_weight"])
self.revo_x_label_fn.select(self.defaults["x_label_fn"])
self.revo_x_label_weight.select(self.defaults["x_label_weight"])
self.revo_y_label_fn.select(self.defaults["y_label_fn"])
self.revo_y_label_weight.select(self.defaults["y_label_weight"])
self.revo_x_ticks_fn.select(self.defaults["x_ticks_fn"])
self.revo_x_ticks_weight.select(self.defaults["x_ticks_weight"])
self.revo_y_ticks_fn.select(self.defaults["y_ticks_fn"])
self.revo_y_ticks_weight.select(self.defaults["y_ticks_weight"])
# value
self.revo_subtitle_fs.setValue(self.defaults["subtitle_fs"])
self.revo_subtitle_pad.setValue(self.defaults["subtitle_pad"])
self.revo_x_label_fs.setValue(self.defaults["x_label_fs"])
self.revo_x_label_pad.setValue(self.defaults["x_label_pad"])
self.revo_y_label_fs.setValue(self.defaults["y_label_fs"])
self.revo_y_label_pad.setValue(self.defaults["y_label_pad"])
self.revo_x_ticks_fs.setValue(self.defaults["x_ticks_fs"])
self.revo_x_ticks_pad.setValue(self.defaults["x_ticks_pad"])
self.revo_x_ticks_rotation.setValue(self.defaults["x_ticks_rot"])
self.revo_y_ticks_fs.setValue(self.defaults["y_ticks_fs"])
self.revo_y_ticks_pad.setValue(self.defaults["y_ticks_pad"])
self.revo_y_ticks_rot.setValue(self.defaults["y_ticks_rot"])
# text
self.titration_x_values.field.setText(','.join(
[str(x) for x in self.defaults["titration_x_values"]]))
def set_values(self):
# checkbox
self.local_variables[
"perform_resevo_fitting"] = self.do_revo_fit.isChecked()
# text
self.local_variables["subtitle_fn"] = str(
self.revo_subtitle_fn.fields.currentText())
self.local_variables["subtitle_weight"] = str(
self.revo_subtitle_weight.fields.currentText())
self.local_variables["x_label_fn"] = str(
self.revo_x_label_fn.fields.currentText())
self.local_variables["x_label_weight"] = str(
self.revo_x_label_weight.fields.currentText())
self.local_variables["y_label_fn"] = str(
self.revo_y_label_fn.fields.currentText())
self.local_variables["y_label_weight"] = str(
self.revo_y_label_weight.fields.currentText())
self.local_variables["x_ticks_fn"] = str(
self.revo_x_ticks_fn.fields.currentText())
self.local_variables["x_ticks_weight"] = str(
self.revo_x_ticks_weight.fields.currentText())
self.local_variables["y_ticks_fn"] = str(
self.revo_y_ticks_fn.fields.currentText())
self.local_variables["y_ticks_weight"] = str(
self.revo_y_ticks_weight.fields.currentText())
# value
self.local_variables[
"subtitle_fs"] = self.revo_subtitle_fs.field.value()
self.local_variables[
"subtitle_pad"] = self.revo_subtitle_pad.field.value()
self.local_variables["x_label_fs"] = self.revo_x_label_fs.field.value()
self.local_variables[
"x_label_pad"] = self.revo_x_label_pad.field.value()
self.local_variables["y_label_fs"] = self.revo_y_label_fs.field.value()
self.local_variables[
"y_label_pad"] = self.revo_y_label_pad.field.value()
self.local_variables["x_ticks_fs"] = self.revo_x_ticks_fs.field.value()
self.local_variables[
"x_ticks_pad"] = self.revo_x_ticks_pad.field.value()
self.local_variables[
"x_ticks_rot"] = self.revo_x_ticks_rotation.field.value()
self.local_variables["y_ticks_fs"] = self.revo_y_ticks_fs.field.value()
self.local_variables[
"y_ticks_pad"] = self.revo_y_ticks_pad.field.value()
self.local_variables[
"y_ticks_rot"] = self.revo_y_ticks_rot.field.value()
# text string list
self.local_variables["titration_x_values"] = \
[float(x) for x in self.titration_x_values.field.text().split(',')]
self.accept()
def get_values(self):
# check
self.do_revo_fit.setChecked(
self.local_variables["perform_resevo_fitting"])
# dropdown
self.revo_subtitle_fn.select(self.local_variables["subtitle_fn"])
self.revo_subtitle_weight.select(
self.local_variables["subtitle_weight"])
self.revo_x_label_fn.select(self.local_variables["x_label_fn"])
self.revo_x_label_weight.select(self.local_variables["x_label_weight"])
self.revo_y_label_fn.select(self.local_variables["y_label_fn"])
self.revo_y_label_weight.select(self.local_variables["y_label_weight"])
self.revo_x_ticks_fn.select(self.local_variables["x_ticks_fn"])
self.revo_x_ticks_weight.select(self.local_variables["x_ticks_weight"])
self.revo_y_ticks_fn.select(self.local_variables["y_ticks_fn"])
self.revo_y_ticks_weight.select(self.local_variables["y_ticks_weight"])
#value
self.revo_subtitle_fs.setValue(self.local_variables["subtitle_fs"])
self.revo_subtitle_pad.setValue(self.local_variables["subtitle_pad"])
self.revo_x_label_fs.setValue(self.local_variables["x_label_fs"])
self.revo_x_label_pad.setValue(self.local_variables["x_label_pad"])
self.revo_y_label_fs.setValue(self.local_variables["y_label_fs"])
self.revo_y_label_pad.setValue(self.local_variables["y_label_pad"])
self.revo_x_ticks_fs.setValue(self.local_variables["x_ticks_fs"])
self.revo_x_ticks_pad.setValue(self.local_variables["x_ticks_pad"])
self.revo_x_ticks_rotation.setValue(
self.local_variables["x_ticks_rot"])
self.revo_y_ticks_fs.setValue(self.local_variables["y_ticks_fs"])
self.revo_y_ticks_pad.setValue(self.local_variables["y_ticks_pad"])
self.revo_y_ticks_rot.setValue(self.local_variables["y_ticks_rot"])
self.revo_y_ticks_rot.setValue(self.local_variables["y_ticks_rot"])
# text list string
self.titration_x_values.field.setText(','.join(
[str(x) for x in self.local_variables["titration_x_values"]]))
class CompactBarPopup(BasePopup):
"""
A popup for setting Compact Bar Plot specific settings in the Farseer-NMR
configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self, parent, "compact_bar_settings", "Compact Bar"
"Plot")
self.bar_cols = LabelledSpinBox(self,
text="Columns Per Page",
minimum=1,
step=1)
self.bar_rows = LabelledSpinBox(self,
text="Rows Per Page",
minimum=1,
step=1)
self.x_tick_font = FontComboBox(self, "X Tick Font")
self.x_tick_font_size = LabelledSpinBox(self,
"X Tick Font Size",
minimum=0,
step=1)
self.x_tick_rotation = LabelledSpinBox(self,
"X Tick Rotation",
minimum=0,
maximum=360,
step=1)
self.x_tick_weight = LabelledCombobox(self,
"X Tick Font Weight",
items=font_weights)
self.shade_unassigned_checkbox = LabelledCheckbox(
self, "Shade Unassigned?")
self.unassigned_shade_alpha = LabelledDoubleSpinBox(self,
"Unassigned Shade "
"Transparency",
minimum=0,
maximum=1,
step=0.1)
self.layout().addWidget(self.bar_cols, 0, 0)
self.layout().addWidget(self.bar_rows, 1, 0)
self.layout().addWidget(self.x_tick_font_size, 2, 0)
self.layout().addWidget(self.x_tick_font, 3, 0)
self.layout().addWidget(self.x_tick_rotation, 4, 0)
self.layout().addWidget(self.x_tick_weight, 5, 0)
self.layout().addWidget(self.shade_unassigned_checkbox, 6, 0)
self.layout().addWidget(self.unassigned_shade_alpha, 7, 0)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 8, 0)
self.get_values()
def get_defaults(self):
# value
self.bar_cols.setValue(self.defaults["cols_page"])
self.bar_rows.setValue(self.defaults["rows_page"])
self.x_tick_font_size.setValue(self.defaults["x_ticks_fs"])
self.x_tick_rotation.setValue(self.defaults["x_ticks_rot"])
self.unassigned_shade_alpha.setValue(
self.defaults["unassigned_shade_alpha"])
# drop down list
self.x_tick_font.select(self.defaults["x_ticks_fn"])
self.x_tick_weight.select(self.defaults["x_ticks_weight"])
# check
self.shade_unassigned_checkbox.setChecked(
self.defaults["unassigned_shade"])
def get_values(self):
# value
self.bar_cols.setValue(self.local_variables["cols_page"])
self.bar_rows.setValue(self.local_variables["rows_page"])
self.x_tick_font_size.setValue(self.local_variables["x_ticks_fs"])
self.x_tick_rotation.setValue(self.local_variables["x_ticks_rot"])
self.unassigned_shade_alpha.setValue(
self.local_variables["unassigned_shade_alpha"])
# drop down list
self.x_tick_font.select(self.local_variables["x_ticks_fn"])
self.x_tick_weight.select(self.local_variables["x_ticks_weight"])
# checkbox
self.shade_unassigned_checkbox.setChecked(
self.local_variables["unassigned_shade"])
def set_values(self):
# value
self.local_variables["cols_page"] = self.bar_cols.field.value()
self.local_variables["rows_page"] = self.bar_rows.field.value()
self.local_variables["x_ticks_fs"] = self.x_tick_font_size.field.value(
)
self.local_variables["x_ticks_rot"] = self.x_tick_rotation.field.value(
)
self.local_variables[
"unassigned_shade_alpha"] = self.unassigned_shade_alpha.field.value(
)
# dropdown list
self.local_variables["x_ticks_fn"] = str(
self.x_tick_font.fields.currentText())
self.local_variables["x_ticks_weight"] = str(
self.x_tick_weight.fields.currentText())
# check
self.local_variables[
"unassigned_shade"] = self.shade_unassigned_checkbox.isChecked()
#
self.accept()
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="DPRE Plot",
settings_key=["DPRE_plot_settings"])
self.DPRE_plot_rows = LabelledSpinBox(self,
"Number of Rows",
minimum=1,
step=1)
self.DPRE_plot_width = LabelledSpinBox(self, "Scale Factor for Width")
self.DPRE_plot_y_label = LabelledLineEdit(self, "Y Label")
self.DPRE_plot_y_label_fs = LabelledSpinBox(self,
"Y Label Font Size",
minimum=0,
step=1)
self.DPRE_plot_ymax = LabelledDoubleSpinBox(self,
"Y Maximum",
minimum=0,
step=0.1)
self.DPRE_plot_dpre_ms = LabelledSpinBox(self,
"Marker Size",
minimum=0,
step=1)
self.DPRE_plot_dpre_alpha = LabelledDoubleSpinBox(
self, "Marker Transparency", minimum=0, maximum=1, step=0.1)
self.DPRE_plot_smooth_lw = LabelledSpinBox(self,
"Smoothed DPRE Line Width",
minimum=0,
step=1)
self.DPRE_plot_ref_color = ColourBox(self, "Reference Data Colour")
self.DPRE_plot_color_init = ColourBox(self, "Grad Start Colour")
self.DPRE_plot_color_end = ColourBox(self, "Grad End Colour")
self.DPRE_plot_x_ticks_fn = FontComboBox(self, "X Tick Font")
self.DPRE_plot_x_ticks_fs = LabelledSpinBox(self,
"X Tick Font Size",
minimum=0,
step=1)
self.DPRE_plot_x_ticks_pad = LabelledDoubleSpinBox(self,
"X Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.DPRE_plot_x_ticks_weight = LabelledCombobox(self,
text="X Font Weight",
items=font_weights)
self.DPRE_plot_grid_color = ColourBox(self, "Grid Colour")
self.DPRE_plot_res_highlight = LabelledCheckbox(
self, "Highlight Residues?")
self.DPRE_plot_res_highlight_list = LabelledLineEdit(
self, "Residues to Highlight")
self.DPRE_plot_shade = LabelledCheckbox(self, "Shade Residues?")
self.DPRE_plot_regions = LabelledLineEdit(self, "Regions to Shade")
self.DPRE_plot_rh_fs = LabelledSpinBox(self,
"Highlight Font Size ",
minimum=0,
step=1)
self.DPRE_plot_rh_y = LabelledDoubleSpinBox(self,
"Residue Label Scale",
minimum=0,
maximum=1,
step=0.01)
self.layout().addWidget(self.DPRE_plot_rows, 0, 0)
self.layout().addWidget(self.DPRE_plot_width, 1, 0)
self.layout().addWidget(self.DPRE_plot_y_label, 2, 0)
self.layout().addWidget(self.DPRE_plot_ref_color, 3, 0)
self.layout().addWidget(self.DPRE_plot_color_init, 4, 0)
self.layout().addWidget(self.DPRE_plot_color_end, 5, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_fs, 6, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_fn, 7, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_pad, 8, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_weight, 9, 0)
self.layout().addWidget(self.DPRE_plot_grid_color, 10, 0)
self.layout().addWidget(self.DPRE_plot_dpre_ms, 0, 1)
self.layout().addWidget(self.DPRE_plot_dpre_alpha, 1, 1)
self.layout().addWidget(self.DPRE_plot_y_label_fs, 2, 1)
self.layout().addWidget(self.DPRE_plot_smooth_lw, 3, 1)
self.layout().addWidget(self.DPRE_plot_res_highlight, 4, 1)
self.layout().addWidget(self.DPRE_plot_res_highlight_list, 5, 1)
self.layout().addWidget(self.DPRE_plot_shade, 6, 1)
self.layout().addWidget(self.DPRE_plot_regions, 7, 1)
self.layout().addWidget(self.DPRE_plot_rh_fs, 8, 1)
self.layout().addWidget(self.DPRE_plot_rh_y, 9, 1)
self.layout().addWidget(self.DPRE_plot_ymax, 10, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 11, 0, 2, 2)
self.get_values()
class DeltaPREPlotPopup(BasePopup):
"""
A popup for setting Delta PRE Plot specific settings in the
Farseer-NMR configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="DPRE Plot",
settings_key=["DPRE_plot_settings"])
self.DPRE_plot_rows = LabelledSpinBox(self,
"Number of Rows",
minimum=1,
step=1)
self.DPRE_plot_width = LabelledSpinBox(self, "Scale Factor for Width")
self.DPRE_plot_y_label = LabelledLineEdit(self, "Y Label")
self.DPRE_plot_y_label_fs = LabelledSpinBox(self,
"Y Label Font Size",
minimum=0,
step=1)
self.DPRE_plot_ymax = LabelledDoubleSpinBox(self,
"Y Maximum",
minimum=0,
step=0.1)
self.DPRE_plot_dpre_ms = LabelledSpinBox(self,
"Marker Size",
minimum=0,
step=1)
self.DPRE_plot_dpre_alpha = LabelledDoubleSpinBox(
self, "Marker Transparency", minimum=0, maximum=1, step=0.1)
self.DPRE_plot_smooth_lw = LabelledSpinBox(self,
"Smoothed DPRE Line Width",
minimum=0,
step=1)
self.DPRE_plot_ref_color = ColourBox(self, "Reference Data Colour")
self.DPRE_plot_color_init = ColourBox(self, "Grad Start Colour")
self.DPRE_plot_color_end = ColourBox(self, "Grad End Colour")
self.DPRE_plot_x_ticks_fn = FontComboBox(self, "X Tick Font")
self.DPRE_plot_x_ticks_fs = LabelledSpinBox(self,
"X Tick Font Size",
minimum=0,
step=1)
self.DPRE_plot_x_ticks_pad = LabelledDoubleSpinBox(self,
"X Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.DPRE_plot_x_ticks_weight = LabelledCombobox(self,
text="X Font Weight",
items=font_weights)
self.DPRE_plot_grid_color = ColourBox(self, "Grid Colour")
self.DPRE_plot_res_highlight = LabelledCheckbox(
self, "Highlight Residues?")
self.DPRE_plot_res_highlight_list = LabelledLineEdit(
self, "Residues to Highlight")
self.DPRE_plot_shade = LabelledCheckbox(self, "Shade Residues?")
self.DPRE_plot_regions = LabelledLineEdit(self, "Regions to Shade")
self.DPRE_plot_rh_fs = LabelledSpinBox(self,
"Highlight Font Size ",
minimum=0,
step=1)
self.DPRE_plot_rh_y = LabelledDoubleSpinBox(self,
"Residue Label Scale",
minimum=0,
maximum=1,
step=0.01)
self.layout().addWidget(self.DPRE_plot_rows, 0, 0)
self.layout().addWidget(self.DPRE_plot_width, 1, 0)
self.layout().addWidget(self.DPRE_plot_y_label, 2, 0)
self.layout().addWidget(self.DPRE_plot_ref_color, 3, 0)
self.layout().addWidget(self.DPRE_plot_color_init, 4, 0)
self.layout().addWidget(self.DPRE_plot_color_end, 5, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_fs, 6, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_fn, 7, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_pad, 8, 0)
self.layout().addWidget(self.DPRE_plot_x_ticks_weight, 9, 0)
self.layout().addWidget(self.DPRE_plot_grid_color, 10, 0)
self.layout().addWidget(self.DPRE_plot_dpre_ms, 0, 1)
self.layout().addWidget(self.DPRE_plot_dpre_alpha, 1, 1)
self.layout().addWidget(self.DPRE_plot_y_label_fs, 2, 1)
self.layout().addWidget(self.DPRE_plot_smooth_lw, 3, 1)
self.layout().addWidget(self.DPRE_plot_res_highlight, 4, 1)
self.layout().addWidget(self.DPRE_plot_res_highlight_list, 5, 1)
self.layout().addWidget(self.DPRE_plot_shade, 6, 1)
self.layout().addWidget(self.DPRE_plot_regions, 7, 1)
self.layout().addWidget(self.DPRE_plot_rh_fs, 8, 1)
self.layout().addWidget(self.DPRE_plot_rh_y, 9, 1)
self.layout().addWidget(self.DPRE_plot_ymax, 10, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 11, 0, 2, 2)
self.get_values()
def set_ranges(self, field_value):
ll = field_value.split(',')
return [[int(x.split('-')[0]), int(x.split('-')[1])] for x in ll]
def get_ranges(self, ranges):
return ','.join(["%s-%s" % (x[0], x[1]) for x in ranges])
def get_defaults(self):
# value
self.DPRE_plot_rows.setValue(self.defaults["rows"])
self.DPRE_plot_width.setValue(self.defaults["width"])
self.DPRE_plot_y_label_fs.setValue(self.defaults["y_label_fs"])
self.DPRE_plot_dpre_ms.setValue(self.defaults["dpre_ms"])
self.DPRE_plot_dpre_alpha.setValue(self.defaults["dpre_alpha"])
self.DPRE_plot_smooth_lw.setValue(self.defaults["smooth_lw"])
self.DPRE_plot_x_ticks_fs.setValue(self.defaults["x_ticks_fs"])
self.DPRE_plot_x_ticks_pad.setValue(self.defaults["x_ticks_pad"])
self.DPRE_plot_rh_fs.setValue(self.defaults["res_highlight_fs"])
self.DPRE_plot_rh_y.setValue(self.defaults["res_highlight_y"])
self.DPRE_plot_ymax.setValue(self.defaults["ymax"])
# text
self.DPRE_plot_y_label.setText(self.defaults["y_label"])
self.DPRE_plot_regions.setText(
self.get_ranges(self.defaults["shade_regions"]))
# colour
self.DPRE_plot_ref_color.get_colour(self.defaults["ref_color"])
self.DPRE_plot_color_init.get_colour(self.defaults["color_init"])
self.DPRE_plot_color_end.get_colour(self.defaults["color_end"])
self.DPRE_plot_grid_color.get_colour(self.defaults["grid_color"])
# dropdown
self.DPRE_plot_x_ticks_fn.select(self.defaults["x_ticks_fn"])
self.DPRE_plot_x_ticks_weight.select(self.defaults["x_ticks_weight"])
# check
self.DPRE_plot_shade.setChecked(self.defaults["shade"])
self.DPRE_plot_res_highlight.setChecked(self.defaults["res_highlight"])
# list
self.DPRE_plot_res_highlight_list.field.setText(','.join(
list(map(str, self.defaults["res_hl_list"]))))
def set_values(self):
# value
self.local_variables["rows"] = self.DPRE_plot_rows.field.value()
self.local_variables["width"] = self.DPRE_plot_width.field.value()
self.local_variables[
"y_label_fs"] = self.DPRE_plot_y_label_fs.field.value()
self.local_variables["dpre_ms"] = self.DPRE_plot_dpre_ms.field.value()
self.local_variables[
"dpre_alpha"] = self.DPRE_plot_dpre_alpha.field.value()
self.local_variables[
"smooth_lw"] = self.DPRE_plot_smooth_lw.field.value()
self.local_variables[
"x_ticks_fs"] = self.DPRE_plot_x_ticks_fs.field.value()
self.local_variables[
"x_ticks_pad"] = self.DPRE_plot_x_ticks_pad.field.value()
self.local_variables[
"res_highlight_fs"] = self.DPRE_plot_rh_fs.field.value()
self.local_variables[
"res_highlight_y"] = self.DPRE_plot_rh_y.field.value()
self.local_variables["ymax"] = self.DPRE_plot_ymax.field.value()
# text
self.local_variables["y_label"] = self.DPRE_plot_y_label.field.text()
self.local_variables["shade_regions"] = self.set_ranges(
self.DPRE_plot_regions.field.text())
self.local_variables["res_hl_list"] = \
list(map(int, self.DPRE_plot_res_highlight_list.field.text().split(',')))
# dropdown
self.local_variables[
"ref_color"] = self.DPRE_plot_ref_color.fields.currentText()
self.local_variables[
"x_ticks_fn"] = self.DPRE_plot_x_ticks_fn.fields.currentText()
self.local_variables[
"x_ticks_weight"] = self.DPRE_plot_x_ticks_weight.fields.currentText(
)
# colour
self.local_variables["color_init"] = colours[
self.DPRE_plot_color_init.fields.currentText()]
self.local_variables["color_end"] = colours[
self.DPRE_plot_color_end.fields.currentText()]
self.local_variables[
"grid_color"] = self.DPRE_plot_grid_color.fields.currentText()
# checkbox
self.local_variables["shade"] = self.DPRE_plot_shade.isChecked()
self.local_variables[
"res_highlight"] = self.DPRE_plot_res_highlight.isChecked()
self.accept()
def get_values(self):
# value
self.DPRE_plot_rows.setValue(self.local_variables["rows"])
self.DPRE_plot_width.setValue(self.local_variables["width"])
self.DPRE_plot_y_label_fs.setValue(self.local_variables["y_label_fs"])
self.DPRE_plot_dpre_ms.setValue(self.local_variables["dpre_ms"])
self.DPRE_plot_dpre_alpha.setValue(self.local_variables["dpre_alpha"])
self.DPRE_plot_smooth_lw.setValue(self.local_variables["smooth_lw"])
self.DPRE_plot_x_ticks_fs.setValue(self.local_variables["x_ticks_fs"])
self.DPRE_plot_x_ticks_pad.setValue(
self.local_variables["x_ticks_pad"])
self.DPRE_plot_rh_fs.setValue(self.local_variables["res_highlight_fs"])
self.DPRE_plot_rh_y.setValue(self.local_variables["res_highlight_y"])
self.DPRE_plot_ymax.setValue(self.local_variables["ymax"])
# text
self.DPRE_plot_y_label.setText(self.local_variables["y_label"])
self.DPRE_plot_res_highlight_list.field.setText(','.join(
list(map(str, self.local_variables["res_hl_list"]))))
self.DPRE_plot_regions.setText(
self.get_ranges(self.local_variables["shade_regions"]))
# colour
self.DPRE_plot_ref_color.get_colour(self.local_variables["ref_color"])
self.DPRE_plot_color_init.get_colour(
self.local_variables["color_init"])
self.DPRE_plot_color_end.get_colour(self.local_variables["color_end"])
self.DPRE_plot_grid_color.get_colour(
self.local_variables["grid_color"])
# dropdown
self.DPRE_plot_x_ticks_fn.select(self.local_variables["x_ticks_fn"])
self.DPRE_plot_x_ticks_weight.select(
self.local_variables["x_ticks_weight"])
# checked
self.DPRE_plot_shade.setChecked(self.local_variables["shade"])
self.DPRE_plot_res_highlight.setChecked(
self.local_variables["res_highlight"])
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Series General Plot Settings",
settings_key=["series_plot_settings"])
self.series_subtitle_groupbox = QGroupBox()
self.series_subtitle_groupbox_layout = QVBoxLayout()
self.series_subtitle_groupbox.setLayout(
self.series_subtitle_groupbox_layout)
self.series_subtitle_groupbox.setTitle("Subtitle Settings")
self.series_subtitle_fn = FontComboBox(self, "Subtitle Font")
self.series_subtitle_fs = LabelledSpinBox(self,
"Subtitle Font Size",
minimum=0,
step=1)
self.series_subtitle_pad = LabelledDoubleSpinBox(self,
"Subtitle Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_subtitle_weight = LabelledCombobox(self,
text="Subtitle "
"Font Weight",
items=font_weights)
self.series_x_label_groupbox = QGroupBox()
self.series_x_label_groupbox_layout = QVBoxLayout()
self.series_x_label_groupbox.setLayout(
self.series_x_label_groupbox_layout)
self.series_x_label_groupbox.setTitle("X Label Settings")
self.series_x_label_fn = FontComboBox(self, "X Font Label")
self.series_x_label_fs = LabelledSpinBox(self,
"X Label Font Size",
minimum=0,
step=1)
self.series_x_label_pad = LabelledDoubleSpinBox(self,
"X Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_x_label_weight = LabelledCombobox(self,
text="X Label F"
"ont Weight",
items=font_weights)
self.series_y_label_groupbox = QGroupBox()
self.series_y_label_groupbox_layout = QVBoxLayout()
self.series_y_label_groupbox.setLayout(
self.series_y_label_groupbox_layout)
self.series_y_label_groupbox.setTitle("Y Label Settings")
self.series_y_tick_groupbox = QGroupBox()
self.series_y_tick_groupbox_layout = QVBoxLayout()
self.series_y_tick_groupbox.setLayout(
self.series_y_tick_groupbox_layout)
self.series_y_tick_groupbox.setTitle("Tick Settings")
self.series_y_label_fn = FontComboBox(self, "Y Label Font")
self.series_y_label_fs = LabelledSpinBox(self,
"Y Label Font Size",
minimum=0,
step=1)
self.series_y_label_pad = LabelledDoubleSpinBox(self,
"Y Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_y_label_weight = LabelledCombobox(self,
text="Y Label "
"Font Weight",
items=font_weights)
self.series_x_ticks_pad = LabelledDoubleSpinBox(self,
"X Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_x_ticks_len = LabelledDoubleSpinBox(self,
"X Tick Length",
minimum=0,
maximum=100,
step=0.1)
self.series_y_ticks_fn = FontComboBox(self, "Y Tick Font")
self.series_y_ticks_fs = LabelledSpinBox(self,
"Y Tick Font Size",
minimum=0,
step=1)
self.series_y_ticks_rot = LabelledSpinBox(self,
"Y Tick Rotation",
minimum=0,
maximum=360,
step=1)
self.series_y_ticks_pad = LabelledDoubleSpinBox(self,
"Y Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_y_ticks_weight = LabelledCombobox(self,
text="Y Tick "
"Font Weight",
items=font_weights)
self.series_y_ticks_len = LabelledDoubleSpinBox(self,
"Y Tick Length",
minimum=0,
maximum=100,
step=0.1)
self.series_y_grid_flag = LabelledCheckbox(self, "Show Y Grid")
self.series_y_grid_color = ColourBox(self, "Y Grid Colour")
self.series_y_grid_linestyle = LabelledCombobox(
self, text="Y Grid "
"Line Style", items=['-', '--', '-.', ':'])
self.series_y_grid_linewidth = LabelledDoubleSpinBox(
self, "Y Grid Line "
"Width")
self.series_y_grid_alpha = LabelledDoubleSpinBox(self,
"Y Grid Transparency",
minimum=0,
maximum=1,
step=0.1)
self.series_vspace = LabelledDoubleSpinBox(self,
"Plot Vertical Spacing",
minimum=-100,
maximum=100,
step=0.1)
self.theo_pre_groupbox = QGroupBox()
self.theo_pre_groupbox_layout = QVBoxLayout()
self.theo_pre_groupbox.setLayout(self.theo_pre_groupbox_layout)
self.theo_pre_groupbox.setTitle("Dedicated PRE Settings")
self.theo_pre_color = ColourBox(self, "Theoretical PRE Line Colour")
self.theo_pre_lw = LabelledDoubleSpinBox(self,
"Theoretical PRE Line Width",
minimum=0,
step=0.1)
self.tag_cartoon_color = ColourBox(self, "Tag Pin Colour")
self.tag_cartoon_lw = LabelledDoubleSpinBox(self,
"Tag Pin Line Width",
minimum=0,
step=0.1)
self.tag_cartoon_ls = LabelledCombobox(self,
"Tag Pin Line Style",
items=line_styles)
self.theo_pre_groupbox.layout().addWidget(self.theo_pre_color)
self.theo_pre_groupbox.layout().addWidget(self.theo_pre_lw)
self.theo_pre_groupbox.layout().addWidget(self.tag_cartoon_color)
self.theo_pre_groupbox.layout().addWidget(self.tag_cartoon_lw)
self.theo_pre_groupbox.layout().addWidget(self.tag_cartoon_ls)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_fn)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_fs)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_pad)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_weight)
self.series_x_label_groupbox.layout().addWidget(self.series_x_label_fn)
self.series_x_label_groupbox.layout().addWidget(self.series_x_label_fs)
self.series_x_label_groupbox.layout().addWidget(
self.series_x_label_pad)
self.series_x_label_groupbox.layout().addWidget(
self.series_x_label_weight)
self.layout().addWidget(self.series_subtitle_groupbox, 0, 0, 4, 1)
self.layout().addWidget(self.series_x_label_groupbox, 0, 1, 4, 1)
self.layout().addWidget(self.theo_pre_groupbox, 0, 2, 4, 1)
self.series_y_label_groupbox.layout().addWidget(self.series_y_label_fn)
self.series_y_label_groupbox.layout().addWidget(self.series_y_label_fs)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_label_weight)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_label_pad)
self.layout().addWidget(self.series_y_label_groupbox, 4, 1, 4, 1)
self.series_y_tick_groupbox.layout().addWidget(self.series_x_ticks_pad)
self.series_y_tick_groupbox.layout().addWidget(self.series_x_ticks_len)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_fn)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_fs)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_rot)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_pad)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_ticks_weight)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_ticks_len)
self.layout().addWidget(self.series_y_tick_groupbox, 4, 0, 4, 1)
self.series_y_grid_groupbox = QGroupBox()
self.series_y_grid_groupbox_layout = QVBoxLayout()
self.series_y_grid_groupbox.setLayout(
self.series_y_grid_groupbox_layout)
self.series_y_grid_groupbox.setTitle("Y Grid Settings")
self.series_y_grid_groupbox.layout().addWidget(self.series_y_grid_flag)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_color)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_linestyle)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_linewidth)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_alpha)
self.series_y_grid_groupbox.layout().addWidget(self.series_vspace)
self.layout().addWidget(self.series_y_grid_groupbox, 4, 2, 4, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 8, 2, 1, 1)
self.get_values()
class SeriesPlotPopup(BasePopup):
"""
A popup for setting Series Plot specific settings in the Farseer-NMR
configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Series General Plot Settings",
settings_key=["series_plot_settings"])
self.series_subtitle_groupbox = QGroupBox()
self.series_subtitle_groupbox_layout = QVBoxLayout()
self.series_subtitle_groupbox.setLayout(
self.series_subtitle_groupbox_layout)
self.series_subtitle_groupbox.setTitle("Subtitle Settings")
self.series_subtitle_fn = FontComboBox(self, "Subtitle Font")
self.series_subtitle_fs = LabelledSpinBox(self,
"Subtitle Font Size",
minimum=0,
step=1)
self.series_subtitle_pad = LabelledDoubleSpinBox(self,
"Subtitle Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_subtitle_weight = LabelledCombobox(self,
text="Subtitle "
"Font Weight",
items=font_weights)
self.series_x_label_groupbox = QGroupBox()
self.series_x_label_groupbox_layout = QVBoxLayout()
self.series_x_label_groupbox.setLayout(
self.series_x_label_groupbox_layout)
self.series_x_label_groupbox.setTitle("X Label Settings")
self.series_x_label_fn = FontComboBox(self, "X Font Label")
self.series_x_label_fs = LabelledSpinBox(self,
"X Label Font Size",
minimum=0,
step=1)
self.series_x_label_pad = LabelledDoubleSpinBox(self,
"X Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_x_label_weight = LabelledCombobox(self,
text="X Label F"
"ont Weight",
items=font_weights)
self.series_y_label_groupbox = QGroupBox()
self.series_y_label_groupbox_layout = QVBoxLayout()
self.series_y_label_groupbox.setLayout(
self.series_y_label_groupbox_layout)
self.series_y_label_groupbox.setTitle("Y Label Settings")
self.series_y_tick_groupbox = QGroupBox()
self.series_y_tick_groupbox_layout = QVBoxLayout()
self.series_y_tick_groupbox.setLayout(
self.series_y_tick_groupbox_layout)
self.series_y_tick_groupbox.setTitle("Tick Settings")
self.series_y_label_fn = FontComboBox(self, "Y Label Font")
self.series_y_label_fs = LabelledSpinBox(self,
"Y Label Font Size",
minimum=0,
step=1)
self.series_y_label_pad = LabelledDoubleSpinBox(self,
"Y Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_y_label_weight = LabelledCombobox(self,
text="Y Label "
"Font Weight",
items=font_weights)
self.series_x_ticks_pad = LabelledDoubleSpinBox(self,
"X Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_x_ticks_len = LabelledDoubleSpinBox(self,
"X Tick Length",
minimum=0,
maximum=100,
step=0.1)
self.series_y_ticks_fn = FontComboBox(self, "Y Tick Font")
self.series_y_ticks_fs = LabelledSpinBox(self,
"Y Tick Font Size",
minimum=0,
step=1)
self.series_y_ticks_rot = LabelledSpinBox(self,
"Y Tick Rotation",
minimum=0,
maximum=360,
step=1)
self.series_y_ticks_pad = LabelledDoubleSpinBox(self,
"Y Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.series_y_ticks_weight = LabelledCombobox(self,
text="Y Tick "
"Font Weight",
items=font_weights)
self.series_y_ticks_len = LabelledDoubleSpinBox(self,
"Y Tick Length",
minimum=0,
maximum=100,
step=0.1)
self.series_y_grid_flag = LabelledCheckbox(self, "Show Y Grid")
self.series_y_grid_color = ColourBox(self, "Y Grid Colour")
self.series_y_grid_linestyle = LabelledCombobox(
self, text="Y Grid "
"Line Style", items=['-', '--', '-.', ':'])
self.series_y_grid_linewidth = LabelledDoubleSpinBox(
self, "Y Grid Line "
"Width")
self.series_y_grid_alpha = LabelledDoubleSpinBox(self,
"Y Grid Transparency",
minimum=0,
maximum=1,
step=0.1)
self.series_vspace = LabelledDoubleSpinBox(self,
"Plot Vertical Spacing",
minimum=-100,
maximum=100,
step=0.1)
self.theo_pre_groupbox = QGroupBox()
self.theo_pre_groupbox_layout = QVBoxLayout()
self.theo_pre_groupbox.setLayout(self.theo_pre_groupbox_layout)
self.theo_pre_groupbox.setTitle("Dedicated PRE Settings")
self.theo_pre_color = ColourBox(self, "Theoretical PRE Line Colour")
self.theo_pre_lw = LabelledDoubleSpinBox(self,
"Theoretical PRE Line Width",
minimum=0,
step=0.1)
self.tag_cartoon_color = ColourBox(self, "Tag Pin Colour")
self.tag_cartoon_lw = LabelledDoubleSpinBox(self,
"Tag Pin Line Width",
minimum=0,
step=0.1)
self.tag_cartoon_ls = LabelledCombobox(self,
"Tag Pin Line Style",
items=line_styles)
self.theo_pre_groupbox.layout().addWidget(self.theo_pre_color)
self.theo_pre_groupbox.layout().addWidget(self.theo_pre_lw)
self.theo_pre_groupbox.layout().addWidget(self.tag_cartoon_color)
self.theo_pre_groupbox.layout().addWidget(self.tag_cartoon_lw)
self.theo_pre_groupbox.layout().addWidget(self.tag_cartoon_ls)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_fn)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_fs)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_pad)
self.series_subtitle_groupbox.layout().addWidget(
self.series_subtitle_weight)
self.series_x_label_groupbox.layout().addWidget(self.series_x_label_fn)
self.series_x_label_groupbox.layout().addWidget(self.series_x_label_fs)
self.series_x_label_groupbox.layout().addWidget(
self.series_x_label_pad)
self.series_x_label_groupbox.layout().addWidget(
self.series_x_label_weight)
self.layout().addWidget(self.series_subtitle_groupbox, 0, 0, 4, 1)
self.layout().addWidget(self.series_x_label_groupbox, 0, 1, 4, 1)
self.layout().addWidget(self.theo_pre_groupbox, 0, 2, 4, 1)
self.series_y_label_groupbox.layout().addWidget(self.series_y_label_fn)
self.series_y_label_groupbox.layout().addWidget(self.series_y_label_fs)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_label_weight)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_label_pad)
self.layout().addWidget(self.series_y_label_groupbox, 4, 1, 4, 1)
self.series_y_tick_groupbox.layout().addWidget(self.series_x_ticks_pad)
self.series_y_tick_groupbox.layout().addWidget(self.series_x_ticks_len)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_fn)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_fs)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_rot)
self.series_y_tick_groupbox.layout().addWidget(self.series_y_ticks_pad)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_ticks_weight)
self.series_y_label_groupbox.layout().addWidget(
self.series_y_ticks_len)
self.layout().addWidget(self.series_y_tick_groupbox, 4, 0, 4, 1)
self.series_y_grid_groupbox = QGroupBox()
self.series_y_grid_groupbox_layout = QVBoxLayout()
self.series_y_grid_groupbox.setLayout(
self.series_y_grid_groupbox_layout)
self.series_y_grid_groupbox.setTitle("Y Grid Settings")
self.series_y_grid_groupbox.layout().addWidget(self.series_y_grid_flag)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_color)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_linestyle)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_linewidth)
self.series_y_grid_groupbox.layout().addWidget(
self.series_y_grid_alpha)
self.series_y_grid_groupbox.layout().addWidget(self.series_vspace)
self.layout().addWidget(self.series_y_grid_groupbox, 4, 2, 4, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 8, 2, 1, 1)
self.get_values()
def get_defaults(self):
# dropdown
self.series_subtitle_fn.select(self.defaults["subtitle_fn"])
self.series_subtitle_weight.select(self.defaults["subtitle_weight"])
self.series_x_label_fn.select(self.defaults["x_label_fn"])
self.series_x_label_weight.select(self.defaults["x_label_weight"])
self.series_y_label_fn.select(self.defaults["y_label_fn"])
self.series_y_label_weight.select(self.defaults["y_label_weight"])
self.series_y_ticks_fn.select(self.defaults["y_ticks_fn"])
self.series_y_ticks_weight.select(self.defaults["y_ticks_weight"])
self.series_y_grid_linestyle.select(self.defaults["y_grid_linestyle"])
self.tag_cartoon_ls.select(self.defaults["tag_cartoon_ls"])
# value
self.series_subtitle_fs.setValue(self.defaults["subtitle_fs"])
self.series_subtitle_pad.setValue(self.defaults["subtitle_pad"])
self.series_x_label_fs.setValue(self.defaults["x_label_fs"])
self.series_x_label_pad.setValue(self.defaults["x_label_pad"])
self.series_y_label_fs.setValue(self.defaults["y_label_fs"])
self.series_y_label_pad.setValue(self.defaults["y_label_pad"])
self.series_x_ticks_pad.setValue(self.defaults["x_ticks_pad"])
self.series_x_ticks_len.setValue(self.defaults["x_ticks_len"])
self.series_y_ticks_fs.setValue(self.defaults["y_ticks_fs"])
self.series_y_ticks_rot.setValue(self.defaults["y_ticks_rot"])
self.series_y_ticks_pad.setValue(self.defaults["y_ticks_pad"])
self.series_y_ticks_len.setValue(self.defaults["y_ticks_len"])
self.series_y_grid_linewidth.setValue(
self.defaults["y_grid_linewidth"])
self.series_y_grid_alpha.setValue(self.defaults["y_grid_alpha"])
self.theo_pre_lw.setValue(self.defaults["theo_pre_lw"])
self.tag_cartoon_lw.setValue(self.defaults["tag_cartoon_lw"])
# checked
self.series_y_grid_flag.setChecked(self.defaults["y_grid_flag"])
# colour
self.series_y_grid_color.get_colour(self.defaults["y_grid_color"])
self.theo_pre_color.get_colour(self.defaults["theo_pre_color"])
self.tag_cartoon_color.get_colour(self.defaults["tag_cartoon_color"])
def set_values(self):
# dropdown
self.local_variables["subtitle_fn"] = str(
self.series_subtitle_fn.fields.currentText())
self.local_variables["subtitle_weight"] = str(
self.series_subtitle_weight.fields.currentText())
self.local_variables["x_label_fn"] = str(
self.series_x_label_fn.fields.currentText())
self.local_variables["x_label_weight"] = str(
self.series_x_label_weight.fields.currentText())
self.local_variables["y_label_fn"] = str(
self.series_y_label_fn.fields.currentText())
self.local_variables["y_label_weight"] = str(
self.series_y_label_weight.fields.currentText())
self.local_variables["y_ticks_fn"] = str(
self.series_y_ticks_fn.fields.currentText())
self.local_variables["y_ticks_weight"] = str(
self.series_y_ticks_weight.fields.currentText())
self.local_variables["y_grid_linestyle"] = str(
self.series_y_grid_linestyle.fields.currentText())
self.local_variables[
"tag_cartoon_ls"] = self.tag_cartoon_ls.fields.currentText()
# value
self.local_variables[
"subtitle_fs"] = self.series_subtitle_fs.field.value()
self.local_variables[
"subtitle_pad"] = self.series_subtitle_pad.field.value()
self.local_variables[
"x_label_fs"] = self.series_x_label_fs.field.value()
self.local_variables[
"x_label_pad"] = self.series_x_label_pad.field.value()
self.local_variables[
"y_label_fs"] = self.series_y_label_fs.field.value()
self.local_variables[
"y_label_pad"] = self.series_y_label_pad.field.value()
self.local_variables[
"x_ticks_pad"] = self.series_x_ticks_pad.field.value()
self.local_variables[
"x_ticks_len"] = self.series_x_ticks_len.field.value()
self.local_variables[
"y_ticks_fs"] = self.series_y_ticks_fs.field.value()
self.local_variables[
"y_ticks_rot"] = self.series_y_ticks_rot.field.value()
self.local_variables[
"y_ticks_pad"] = self.series_y_ticks_pad.field.value()
self.local_variables[
"y_ticks_len"] = self.series_y_ticks_len.field.value()
self.local_variables[
"y_grid_linewidth"] = self.series_y_grid_linewidth.field.value()
self.local_variables[
"y_grid_alpha"] = self.series_y_grid_alpha.field.value()
self.local_variables["theo_pre_lw"] = self.theo_pre_lw.field.value()
self.local_variables[
"tag_cartoon_lw"] = self.tag_cartoon_lw.field.value()
# colours
self.local_variables["y_grid_color"] = str(
self.series_y_grid_color.fields.currentText())
self.local_variables[
"theo_pre_color"] = self.theo_pre_color.fields.currentText()
self.local_variables[
"tag_cartoon_color"] = self.tag_cartoon_color.fields.currentText()
# checked
self.local_variables[
"y_grid_flag"] = self.series_y_grid_flag.isChecked()
self.accept()
def get_values(self):
# select
self.series_subtitle_fn.select(self.local_variables["subtitle_fn"])
self.series_subtitle_weight.select(
self.local_variables["subtitle_weight"])
self.series_x_label_fn.select(self.local_variables["x_label_fn"])
self.series_x_label_weight.select(
self.local_variables["x_label_weight"])
self.series_y_label_fn.select(self.local_variables["y_label_fn"])
self.series_y_label_weight.select(
self.local_variables["y_label_weight"])
self.series_y_ticks_fn.select(self.local_variables["y_ticks_fn"])
self.series_y_ticks_weight.select(
self.local_variables["y_ticks_weight"])
self.series_y_grid_linestyle.select(
self.local_variables["y_grid_linestyle"])
self.tag_cartoon_ls.select(self.local_variables["tag_cartoon_ls"])
# value
self.series_subtitle_fs.setValue(self.local_variables["subtitle_fs"])
self.series_subtitle_pad.setValue(self.local_variables["subtitle_pad"])
self.series_x_label_fs.setValue(self.local_variables["x_label_fs"])
self.series_x_label_pad.setValue(self.local_variables["x_label_pad"])
self.series_y_label_fs.setValue(self.local_variables["y_label_fs"])
self.series_y_label_pad.setValue(self.local_variables["y_label_pad"])
self.series_x_ticks_pad.setValue(self.local_variables["x_ticks_pad"])
self.series_x_ticks_len.setValue(self.local_variables["x_ticks_len"])
self.series_y_ticks_fs.setValue(self.local_variables["y_ticks_fs"])
self.series_y_ticks_rot.setValue(self.local_variables["y_ticks_rot"])
self.series_y_ticks_pad.setValue(self.local_variables["y_ticks_pad"])
self.series_y_ticks_len.setValue(self.local_variables["y_ticks_len"])
self.series_y_grid_linewidth.setValue(
self.local_variables["y_grid_linewidth"])
self.series_y_grid_alpha.setValue(self.local_variables["y_grid_alpha"])
self.theo_pre_lw.setValue(self.local_variables["theo_pre_lw"])
self.tag_cartoon_lw.setValue(self.local_variables["tag_cartoon_lw"])
# colour
self.series_y_grid_color.get_colour(
self.local_variables["y_grid_color"])
self.theo_pre_color.get_colour(self.local_variables["theo_pre_color"])
self.tag_cartoon_color.get_colour(
self.local_variables["tag_cartoon_color"])
# checked
self.series_y_grid_flag.setChecked(self.local_variables["y_grid_flag"])
def __init__(self, parent=None, gui_settings=None, footer=None):
BaseWidget.__init__(self,
parent=parent,
gui_settings=gui_settings,
footer=footer)
#
grid = QGridLayout()
grid2 = QGridLayout()
self.setLayout(grid2)
new_widget = QWidget(self)
new_widget.setObjectName("SettingsWidget")
new_widget.setLayout(grid)
self.layout().addWidget(new_widget)
#
grid.setAlignment(QtCore.Qt.AlignTop)
self.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
paths_group_box = QGroupBox()
paths_groupbox_layout = QGridLayout()
paths_groupbox_layout.setSpacing(2)
paths_group_box.setLayout(paths_groupbox_layout)
#
self.spectrum_path = LabelledLineEdit(
self,
"Peaklists Dataset Folder",
callback=self.set_spectrum_path_text)
self.output_path = LabelledLineEdit(self,
"Calculation Output Folder",
callback=self.set_output_path)
self.spectrum_path_browse = QPushButton("...", self)
self.output_path_browse = QPushButton("...", self)
self.spectrum_path_browse.clicked.connect(self.set_spectrum_path)
self.output_path_browse.clicked.connect(self.set_output_path)
# layout
paths_group_box.layout().addWidget(self.spectrum_path, 0, 0, 1, 12)
paths_group_box.layout().addWidget(self.output_path, 1, 0, 1, 12)
paths_group_box.layout().addWidget(self.spectrum_path_browse, 0, 13, 1,
1)
paths_group_box.layout().addWidget(self.output_path_browse, 1, 13, 1,
1)
# boxes
self.ext_bar_checkbox = LabelledCheckbox(self, "Extended Bar")
self.comp_bar_checkbox = LabelledCheckbox(self, "Compact Bar")
self.vert_bar_checkbox = LabelledCheckbox(self, "Vertical Bar")
self.res_evo_checkbox = LabelledCheckbox(self, "Residue Evolution")
self.scatter_checkbox = LabelledCheckbox(self, "CS Scatter")
self.dpre_checkbox = LabelledCheckbox(self, "Delta PRE Plot")
self.heat_map_checkbox = LabelledCheckbox(self, "Heat Map")
self.scatter_flower_checkbox = LabelledCheckbox(
self, " CS Scatter Flower")
self.tplot_button = QPushButton("General Settings", self)
self.tplot_button.clicked.connect(
partial(self.show_popup, SeriesPlotPopup))
self.revo_button = QPushButton("General Evolution Settings", self)
self.revo_button.clicked.connect(
partial(self.show_popup, GeneralResidueEvolution))
self.bar_button = QPushButton("Bar Settings", self)
self.bar_button.clicked.connect(partial(self.show_popup, BarPlotPopup))
self.ext_bar_button = QPushButton("Settings", self)
self.ext_bar_button.clicked.connect(
partial(self.show_popup, ExtendedBarPopup))
self.comp_bar_button = QPushButton("Settings", self)
self.comp_bar_button.clicked.connect(
partial(self.show_popup, CompactBarPopup))
self.vert_bar_button = QPushButton("Settings", self)
self.vert_bar_button.clicked.connect(
partial(self.show_popup, VerticalBarPopup))
self.res_evo_button = QPushButton("Settings", self)
self.res_evo_button.clicked.connect(
partial(self.show_popup, ResidueEvolutionPopup))
self.scatter_button = QPushButton("Settings", self)
self.scatter_button.clicked.connect(
partial(self.show_popup, ScatterPlotPopup))
self.scatter_flower_button = QPushButton("Settings", self)
self.scatter_flower_button.clicked.connect(
partial(self.show_popup, ScatterFlowerPlotPopup))
self.heat_map_button = QPushButton("Settings", self)
self.heat_map_button.clicked.connect(
partial(self.show_popup, HeatMapPopup))
self.dpre_button = QPushButton("Settings", self)
self.dpre_button.clicked.connect(
partial(self.show_popup, DeltaPREPlotPopup))
self.fasta_button = QPushButton("Select FASTA Files", self)
self.fasta_button.clicked.connect(
partial(self.show_popup, FastaSelectionPopup))
self.has_sidechains_checkbox = LabelledCheckbox(
self, "Are Sidechain Peaks Present?")
self.use_sidechains_checkbox = LabelledCheckbox(
self, "Analyse Sidechains?")
self.perform_comparisons_checkbox = LabelledCheckbox(
self, "Perform Comparisons?")
self.apply_fasta_checkbox = LabelledCheckbox(
self, "Apply FASTA?", callback=self.activate_fasta)
self.fasta_start = LabelledSpinBox(self,
"Fasta start",
maximum=10000,
step=1)
self.expand_missing_yy = LabelledCheckbox(
self, "Search missing residues along Y axis?")
self.expand_missing_zz = LabelledCheckbox(
self, "Search missing residues along Z axis?")
self.figure_width = LabelledDoubleSpinBox(self,
"Figure Width",
minimum=0.1,
maximum=100,
step=0.1)
self.figure_height = LabelledDoubleSpinBox(self,
"Figure Height",
minimum=0.1,
maximum=100,
step=0.1)
self.figure_dpi = LabelledSpinBox(self,
"Figure DPI",
minimum=0,
maximum=10000,
step=10)
self.figure_format = LabelledCombobox(
self, "Figure Format", items=['pdf', 'png', 'ps', 'svg'])
sidechains_groupbox = QGroupBox()
sidechains_groupbox.setTitle("Sidechains")
sidechains_groupbox_layout = QVBoxLayout()
sidechains_groupbox.setLayout(sidechains_groupbox_layout)
sidechains_groupbox.layout().addWidget(self.has_sidechains_checkbox)
sidechains_groupbox.layout().addWidget(self.use_sidechains_checkbox)
fasta_groupbox = QGroupBox()
fasta_groupbox.setTitle("FASTA")
fasta_groupbox_layout = QGridLayout()
fasta_groupbox.setLayout(fasta_groupbox_layout)
fasta_groupbox.layout().addWidget(self.apply_fasta_checkbox, 0, 0)
fasta_groupbox.layout().addWidget(self.fasta_start, 0, 1)
fasta_groupbox.layout().addWidget(self.fasta_button, 1, 0, 1, 2)
self.x_checkbox = LabelledCheckbox(self, "Along X Axis")
self.y_checkbox = LabelledCheckbox(self, "Along Y Axis")
self.z_checkbox = LabelledCheckbox(self, "Along Z Axis")
series_groupbox = QGroupBox()
series_groupbox.setTitle("Experimental Series Analysis")
series_groupbox_layout = QVBoxLayout()
series_groupbox.setLayout(series_groupbox_layout)
series_groupbox.layout().addWidget(self.x_checkbox)
series_groupbox.layout().addWidget(self.y_checkbox)
series_groupbox.layout().addWidget(self.z_checkbox)
series_groupbox.layout().addWidget(self.perform_comparisons_checkbox)
figure_groupbox = QGroupBox()
figure_groupbox.setTitle("Figure")
figure_groupbox_layout = QVBoxLayout()
figure_groupbox.setLayout(figure_groupbox_layout)
figure_groupbox.layout().addWidget(self.figure_width)
figure_groupbox.layout().addWidget(self.figure_height)
figure_groupbox.layout().addWidget(self.figure_dpi)
figure_groupbox.layout().addWidget(self.figure_format)
self.cs_correction = LabelledCheckbox(self, "CS Correction?")
self.cs_correction_res_ref = LabelledSpinBox(self,
text="Correction Residue")
cs_norm_groupbox = QGroupBox()
cs_norm_groupbox.setTitle("Chemical Shift Normalisation")
cs_groupbox_layout = QVBoxLayout()
cs_norm_groupbox.setLayout(cs_groupbox_layout)
cs_norm_groupbox.layout().addWidget(self.cs_correction)
cs_norm_groupbox.layout().addWidget(self.cs_correction_res_ref)
missing_analysis_groupbox = QGroupBox()
missing_analysis_groupbox.setTitle(
"Search missing residues across axes")
missing_analysis_groupbox_layout = QVBoxLayout()
missing_analysis_groupbox.setLayout(missing_analysis_groupbox_layout)
missing_analysis_groupbox.layout().addWidget(self.expand_missing_yy)
missing_analysis_groupbox.layout().addWidget(self.expand_missing_zz)
cs_groupbox = QGroupBox()
cs_groupbox.setTitle("CSP Specific")
cs_groupbox_layout = QVBoxLayout()
cs_groupbox.setLayout(cs_groupbox_layout)
self.csp_alpha = LabelledDoubleSpinBox(self,
text="CSP Alpha",
minimum=0.01,
maximum=1,
step=0.01)
self.csp_missing = LabelledCombobox(self,
text="Show Missing Residues",
items=['prev', 'full', 'zero'])
self.csp_exceptions = QPushButton("Alpha by residue", self)
self.csp_exceptions.clicked.connect(
partial(self.show_popup, CSPExceptionsPopup))
cs_groupbox.layout().addWidget(self.csp_alpha)
cs_groupbox.layout().addWidget(self.csp_missing)
cs_groupbox.layout().addWidget(self.csp_exceptions)
restraint_groupbox = QGroupBox()
restraint_groupbox.setTitle("Parameter Calculation")
restraint_groupbox_layout = QGridLayout()
restraint_groupbox.setLayout(restraint_groupbox_layout)
self.plot_F1_data = LabelledCheckbox(self, text="F1 data")
self.plot_F2_data = LabelledCheckbox(self, text="F2 data")
self.plot_CSP = LabelledCheckbox(self, text="CSPs")
self.plot_height_ratio = LabelledCheckbox(self,
text="Height Ratio",
callback=self.activate_pre)
self.plot_volume_ratio = LabelledCheckbox(self,
text="Volume Ratio",
callback=self.activate_pre)
self.plot_F1_y_label = LabelledLineEdit(self, text='')
self.plot_F2_y_label = LabelledLineEdit(self, text='')
self.plot_CSP_y_label = LabelledLineEdit(self, text='')
self.plot_height_y_label = LabelledLineEdit(self, text='')
self.plot_volume_y_label = LabelledLineEdit(self, text='')
self.plot_F1_calccol = LabelledLineEdit(self, text="")
self.plot_F2_calccol = LabelledLineEdit(self, text="")
self.plot_CSP_calccol = LabelledLineEdit(self, text="")
self.plot_height_calccol = LabelledLineEdit(self, text="")
self.plot_volume_calccol = LabelledLineEdit(self, text="")
self.plot_F1_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_F2_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_CSP_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_height_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_volume_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
restraint_label = QLabel("Y Axis Label")
axis_label = QLabel("Parameter Name")
scale_label = QLabel("Y Axis Scale")
restraint_label.setAlignment(QtCore.Qt.AlignHCenter)
axis_label.setAlignment(QtCore.Qt.AlignHCenter)
scale_label.setAlignment(QtCore.Qt.AlignHCenter)
restraint_groupbox.layout().addWidget(restraint_label, 0, 2)
restraint_groupbox.layout().addWidget(axis_label, 0, 1)
restraint_groupbox.layout().addWidget(scale_label, 0, 3)
restraint_groupbox.layout().addWidget(self.plot_F1_data, 1, 0)
restraint_groupbox.layout().addWidget(self.plot_F2_data, 2, 0)
restraint_groupbox.layout().addWidget(self.plot_CSP, 3, 0)
restraint_groupbox.layout().addWidget(self.plot_height_ratio, 4, 0)
restraint_groupbox.layout().addWidget(self.plot_volume_ratio, 5, 0)
restraint_groupbox.layout().addWidget(self.plot_F1_y_label, 1, 2)
restraint_groupbox.layout().addWidget(self.plot_F2_y_label, 2, 2)
restraint_groupbox.layout().addWidget(self.plot_CSP_y_label, 3, 2)
restraint_groupbox.layout().addWidget(self.plot_height_y_label, 4, 2)
restraint_groupbox.layout().addWidget(self.plot_volume_y_label, 5, 2)
restraint_groupbox.layout().addWidget(self.plot_F1_calccol, 1, 1)
restraint_groupbox.layout().addWidget(self.plot_F2_calccol, 2, 1)
restraint_groupbox.layout().addWidget(self.plot_CSP_calccol, 3, 1)
restraint_groupbox.layout().addWidget(self.plot_height_calccol, 4, 1)
restraint_groupbox.layout().addWidget(self.plot_volume_calccol, 5, 1)
restraint_groupbox.layout().addWidget(self.plot_F1_y_scale, 1, 3)
restraint_groupbox.layout().addWidget(self.plot_F2_y_scale, 2, 3)
restraint_groupbox.layout().addWidget(self.plot_CSP_y_scale, 3, 3)
restraint_groupbox.layout().addWidget(self.plot_height_y_scale, 4, 3)
restraint_groupbox.layout().addWidget(self.plot_volume_y_scale, 5, 3)
pre_groupbox = QGroupBox()
pre_groupbox.setTitle("PRE Analysis")
pre_groupbox_layout = QGridLayout()
pre_groupbox.setLayout(pre_groupbox_layout)
self.do_pre_checkbox = LabelledCheckbox(self, "Do PRE Analysis")
self.do_pre_checkbox.setEnabled(False)
self.heat_map_checkbox.setEnabled(False)
self.dpre_checkbox.setEnabled(False)
self.pre_settings = QPushButton("PRE Settings", self)
self.pre_settings.clicked.connect(
partial(self.show_popup, PreAnalysisPopup))
self.pretheo_button = QPushButton("Select theo. PRE Files", self)
self.pretheo_button.clicked.connect(
partial(self.show_popup, PRETheoreticalSelectionPopup))
pre_groupbox.layout().addWidget(self.do_pre_checkbox, 0, 0)
pre_groupbox.layout().addWidget(self.pre_settings, 0, 1)
pre_groupbox.layout().addWidget(self.dpre_checkbox, 1, 0)
pre_groupbox.layout().addWidget(self.dpre_button, 1, 1)
pre_groupbox.layout().addWidget(self.heat_map_checkbox, 2, 0)
pre_groupbox.layout().addWidget(self.heat_map_button, 2, 1)
pre_groupbox.layout().addWidget(self.pretheo_button)
series_plotting_groupbox = QGroupBox()
series_plotting_groupbox.setTitle("Series Plotting")
series_plotting_groupbox_layout = QGridLayout()
series_plotting_groupbox.setLayout(series_plotting_groupbox_layout)
series_plotting_groupbox.layout().addWidget(self.tplot_button, 0, 0, 1,
1)
series_plotting_groupbox.layout().addWidget(self.bar_button, 0, 1, 1,
1)
series_plotting_groupbox.layout().addWidget(self.ext_bar_checkbox, 1,
0, 1, 1)
series_plotting_groupbox.layout().addWidget(self.ext_bar_button, 1, 1,
1, 1)
series_plotting_groupbox.layout().addWidget(self.comp_bar_checkbox, 2,
0, 1, 1)
series_plotting_groupbox.layout().addWidget(self.comp_bar_button, 2, 1,
1, 1)
series_plotting_groupbox.layout().addWidget(self.vert_bar_checkbox, 3,
0, 1, 1)
series_plotting_groupbox.layout().addWidget(self.vert_bar_button, 3, 1,
1, 1)
res_evo_groupbox = QGroupBox()
res_evo_groupbox.setTitle("Residue Evolution Plot")
res_evo_groupbox_layout = QGridLayout()
res_evo_groupbox.setLayout(res_evo_groupbox_layout)
res_evo_groupbox.layout().addWidget(self.revo_button, 0, 0, 1, 2)
res_evo_groupbox.layout().addWidget(self.res_evo_checkbox, 1, 0, 1, 1)
res_evo_groupbox.layout().addWidget(self.res_evo_button, 1, 1, 1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_checkbox, 2, 0, 1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_button, 2, 1, 1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_flower_checkbox, 3, 0,
1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_flower_button, 3, 1,
1, 1)
grid.layout().addWidget(paths_group_box, 0, 0, 3, 16)
grid.layout().addWidget(fasta_groupbox, 7, 4, 4, 4)
grid.layout().addWidget(sidechains_groupbox, 3, 4, 4, 4)
grid.layout().addWidget(cs_norm_groupbox, 7, 0, 4, 4)
grid.layout().addWidget(missing_analysis_groupbox, 3, 0, 4, 4)
grid.layout().addWidget(series_groupbox, 3, 8, 6, 4)
grid.layout().addWidget(figure_groupbox, 3, 12, 6, 4)
grid.layout().addWidget(figure_groupbox, 3, 12, 6, 4)
grid.layout().addWidget(restraint_groupbox, 11, 0, 10, 8)
grid.layout().addWidget(cs_groupbox, 9, 8, 5, 4)
grid.layout().addWidget(pre_groupbox, 9, 12, 5, 4)
grid.layout().addWidget(series_plotting_groupbox, 14, 8, 7, 4)
grid.layout().addWidget(res_evo_groupbox, 14, 12, 7, 4)
grid.layout().addWidget(self.tab_footer, 21, 0, 2, 16)
#
self.load_variables()
class Settings(BaseWidget):
def __init__(self, parent=None, gui_settings=None, footer=None):
BaseWidget.__init__(self,
parent=parent,
gui_settings=gui_settings,
footer=footer)
#
grid = QGridLayout()
grid2 = QGridLayout()
self.setLayout(grid2)
new_widget = QWidget(self)
new_widget.setObjectName("SettingsWidget")
new_widget.setLayout(grid)
self.layout().addWidget(new_widget)
#
grid.setAlignment(QtCore.Qt.AlignTop)
self.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
paths_group_box = QGroupBox()
paths_groupbox_layout = QGridLayout()
paths_groupbox_layout.setSpacing(2)
paths_group_box.setLayout(paths_groupbox_layout)
#
self.spectrum_path = LabelledLineEdit(
self,
"Peaklists Dataset Folder",
callback=self.set_spectrum_path_text)
self.output_path = LabelledLineEdit(self,
"Calculation Output Folder",
callback=self.set_output_path)
self.spectrum_path_browse = QPushButton("...", self)
self.output_path_browse = QPushButton("...", self)
self.spectrum_path_browse.clicked.connect(self.set_spectrum_path)
self.output_path_browse.clicked.connect(self.set_output_path)
# layout
paths_group_box.layout().addWidget(self.spectrum_path, 0, 0, 1, 12)
paths_group_box.layout().addWidget(self.output_path, 1, 0, 1, 12)
paths_group_box.layout().addWidget(self.spectrum_path_browse, 0, 13, 1,
1)
paths_group_box.layout().addWidget(self.output_path_browse, 1, 13, 1,
1)
# boxes
self.ext_bar_checkbox = LabelledCheckbox(self, "Extended Bar")
self.comp_bar_checkbox = LabelledCheckbox(self, "Compact Bar")
self.vert_bar_checkbox = LabelledCheckbox(self, "Vertical Bar")
self.res_evo_checkbox = LabelledCheckbox(self, "Residue Evolution")
self.scatter_checkbox = LabelledCheckbox(self, "CS Scatter")
self.dpre_checkbox = LabelledCheckbox(self, "Delta PRE Plot")
self.heat_map_checkbox = LabelledCheckbox(self, "Heat Map")
self.scatter_flower_checkbox = LabelledCheckbox(
self, " CS Scatter Flower")
self.tplot_button = QPushButton("General Settings", self)
self.tplot_button.clicked.connect(
partial(self.show_popup, SeriesPlotPopup))
self.revo_button = QPushButton("General Evolution Settings", self)
self.revo_button.clicked.connect(
partial(self.show_popup, GeneralResidueEvolution))
self.bar_button = QPushButton("Bar Settings", self)
self.bar_button.clicked.connect(partial(self.show_popup, BarPlotPopup))
self.ext_bar_button = QPushButton("Settings", self)
self.ext_bar_button.clicked.connect(
partial(self.show_popup, ExtendedBarPopup))
self.comp_bar_button = QPushButton("Settings", self)
self.comp_bar_button.clicked.connect(
partial(self.show_popup, CompactBarPopup))
self.vert_bar_button = QPushButton("Settings", self)
self.vert_bar_button.clicked.connect(
partial(self.show_popup, VerticalBarPopup))
self.res_evo_button = QPushButton("Settings", self)
self.res_evo_button.clicked.connect(
partial(self.show_popup, ResidueEvolutionPopup))
self.scatter_button = QPushButton("Settings", self)
self.scatter_button.clicked.connect(
partial(self.show_popup, ScatterPlotPopup))
self.scatter_flower_button = QPushButton("Settings", self)
self.scatter_flower_button.clicked.connect(
partial(self.show_popup, ScatterFlowerPlotPopup))
self.heat_map_button = QPushButton("Settings", self)
self.heat_map_button.clicked.connect(
partial(self.show_popup, HeatMapPopup))
self.dpre_button = QPushButton("Settings", self)
self.dpre_button.clicked.connect(
partial(self.show_popup, DeltaPREPlotPopup))
self.fasta_button = QPushButton("Select FASTA Files", self)
self.fasta_button.clicked.connect(
partial(self.show_popup, FastaSelectionPopup))
self.has_sidechains_checkbox = LabelledCheckbox(
self, "Are Sidechain Peaks Present?")
self.use_sidechains_checkbox = LabelledCheckbox(
self, "Analyse Sidechains?")
self.perform_comparisons_checkbox = LabelledCheckbox(
self, "Perform Comparisons?")
self.apply_fasta_checkbox = LabelledCheckbox(
self, "Apply FASTA?", callback=self.activate_fasta)
self.fasta_start = LabelledSpinBox(self,
"Fasta start",
maximum=10000,
step=1)
self.expand_missing_yy = LabelledCheckbox(
self, "Search missing residues along Y axis?")
self.expand_missing_zz = LabelledCheckbox(
self, "Search missing residues along Z axis?")
self.figure_width = LabelledDoubleSpinBox(self,
"Figure Width",
minimum=0.1,
maximum=100,
step=0.1)
self.figure_height = LabelledDoubleSpinBox(self,
"Figure Height",
minimum=0.1,
maximum=100,
step=0.1)
self.figure_dpi = LabelledSpinBox(self,
"Figure DPI",
minimum=0,
maximum=10000,
step=10)
self.figure_format = LabelledCombobox(
self, "Figure Format", items=['pdf', 'png', 'ps', 'svg'])
sidechains_groupbox = QGroupBox()
sidechains_groupbox.setTitle("Sidechains")
sidechains_groupbox_layout = QVBoxLayout()
sidechains_groupbox.setLayout(sidechains_groupbox_layout)
sidechains_groupbox.layout().addWidget(self.has_sidechains_checkbox)
sidechains_groupbox.layout().addWidget(self.use_sidechains_checkbox)
fasta_groupbox = QGroupBox()
fasta_groupbox.setTitle("FASTA")
fasta_groupbox_layout = QGridLayout()
fasta_groupbox.setLayout(fasta_groupbox_layout)
fasta_groupbox.layout().addWidget(self.apply_fasta_checkbox, 0, 0)
fasta_groupbox.layout().addWidget(self.fasta_start, 0, 1)
fasta_groupbox.layout().addWidget(self.fasta_button, 1, 0, 1, 2)
self.x_checkbox = LabelledCheckbox(self, "Along X Axis")
self.y_checkbox = LabelledCheckbox(self, "Along Y Axis")
self.z_checkbox = LabelledCheckbox(self, "Along Z Axis")
series_groupbox = QGroupBox()
series_groupbox.setTitle("Experimental Series Analysis")
series_groupbox_layout = QVBoxLayout()
series_groupbox.setLayout(series_groupbox_layout)
series_groupbox.layout().addWidget(self.x_checkbox)
series_groupbox.layout().addWidget(self.y_checkbox)
series_groupbox.layout().addWidget(self.z_checkbox)
series_groupbox.layout().addWidget(self.perform_comparisons_checkbox)
figure_groupbox = QGroupBox()
figure_groupbox.setTitle("Figure")
figure_groupbox_layout = QVBoxLayout()
figure_groupbox.setLayout(figure_groupbox_layout)
figure_groupbox.layout().addWidget(self.figure_width)
figure_groupbox.layout().addWidget(self.figure_height)
figure_groupbox.layout().addWidget(self.figure_dpi)
figure_groupbox.layout().addWidget(self.figure_format)
self.cs_correction = LabelledCheckbox(self, "CS Correction?")
self.cs_correction_res_ref = LabelledSpinBox(self,
text="Correction Residue")
cs_norm_groupbox = QGroupBox()
cs_norm_groupbox.setTitle("Chemical Shift Normalisation")
cs_groupbox_layout = QVBoxLayout()
cs_norm_groupbox.setLayout(cs_groupbox_layout)
cs_norm_groupbox.layout().addWidget(self.cs_correction)
cs_norm_groupbox.layout().addWidget(self.cs_correction_res_ref)
missing_analysis_groupbox = QGroupBox()
missing_analysis_groupbox.setTitle(
"Search missing residues across axes")
missing_analysis_groupbox_layout = QVBoxLayout()
missing_analysis_groupbox.setLayout(missing_analysis_groupbox_layout)
missing_analysis_groupbox.layout().addWidget(self.expand_missing_yy)
missing_analysis_groupbox.layout().addWidget(self.expand_missing_zz)
cs_groupbox = QGroupBox()
cs_groupbox.setTitle("CSP Specific")
cs_groupbox_layout = QVBoxLayout()
cs_groupbox.setLayout(cs_groupbox_layout)
self.csp_alpha = LabelledDoubleSpinBox(self,
text="CSP Alpha",
minimum=0.01,
maximum=1,
step=0.01)
self.csp_missing = LabelledCombobox(self,
text="Show Missing Residues",
items=['prev', 'full', 'zero'])
self.csp_exceptions = QPushButton("Alpha by residue", self)
self.csp_exceptions.clicked.connect(
partial(self.show_popup, CSPExceptionsPopup))
cs_groupbox.layout().addWidget(self.csp_alpha)
cs_groupbox.layout().addWidget(self.csp_missing)
cs_groupbox.layout().addWidget(self.csp_exceptions)
restraint_groupbox = QGroupBox()
restraint_groupbox.setTitle("Parameter Calculation")
restraint_groupbox_layout = QGridLayout()
restraint_groupbox.setLayout(restraint_groupbox_layout)
self.plot_F1_data = LabelledCheckbox(self, text="F1 data")
self.plot_F2_data = LabelledCheckbox(self, text="F2 data")
self.plot_CSP = LabelledCheckbox(self, text="CSPs")
self.plot_height_ratio = LabelledCheckbox(self,
text="Height Ratio",
callback=self.activate_pre)
self.plot_volume_ratio = LabelledCheckbox(self,
text="Volume Ratio",
callback=self.activate_pre)
self.plot_F1_y_label = LabelledLineEdit(self, text='')
self.plot_F2_y_label = LabelledLineEdit(self, text='')
self.plot_CSP_y_label = LabelledLineEdit(self, text='')
self.plot_height_y_label = LabelledLineEdit(self, text='')
self.plot_volume_y_label = LabelledLineEdit(self, text='')
self.plot_F1_calccol = LabelledLineEdit(self, text="")
self.plot_F2_calccol = LabelledLineEdit(self, text="")
self.plot_CSP_calccol = LabelledLineEdit(self, text="")
self.plot_height_calccol = LabelledLineEdit(self, text="")
self.plot_volume_calccol = LabelledLineEdit(self, text="")
self.plot_F1_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_F2_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_CSP_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_height_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
self.plot_volume_y_scale = LabelledDoubleSpinBox(self,
text="",
minimum=0,
step=0.1)
restraint_label = QLabel("Y Axis Label")
axis_label = QLabel("Parameter Name")
scale_label = QLabel("Y Axis Scale")
restraint_label.setAlignment(QtCore.Qt.AlignHCenter)
axis_label.setAlignment(QtCore.Qt.AlignHCenter)
scale_label.setAlignment(QtCore.Qt.AlignHCenter)
restraint_groupbox.layout().addWidget(restraint_label, 0, 2)
restraint_groupbox.layout().addWidget(axis_label, 0, 1)
restraint_groupbox.layout().addWidget(scale_label, 0, 3)
restraint_groupbox.layout().addWidget(self.plot_F1_data, 1, 0)
restraint_groupbox.layout().addWidget(self.plot_F2_data, 2, 0)
restraint_groupbox.layout().addWidget(self.plot_CSP, 3, 0)
restraint_groupbox.layout().addWidget(self.plot_height_ratio, 4, 0)
restraint_groupbox.layout().addWidget(self.plot_volume_ratio, 5, 0)
restraint_groupbox.layout().addWidget(self.plot_F1_y_label, 1, 2)
restraint_groupbox.layout().addWidget(self.plot_F2_y_label, 2, 2)
restraint_groupbox.layout().addWidget(self.plot_CSP_y_label, 3, 2)
restraint_groupbox.layout().addWidget(self.plot_height_y_label, 4, 2)
restraint_groupbox.layout().addWidget(self.plot_volume_y_label, 5, 2)
restraint_groupbox.layout().addWidget(self.plot_F1_calccol, 1, 1)
restraint_groupbox.layout().addWidget(self.plot_F2_calccol, 2, 1)
restraint_groupbox.layout().addWidget(self.plot_CSP_calccol, 3, 1)
restraint_groupbox.layout().addWidget(self.plot_height_calccol, 4, 1)
restraint_groupbox.layout().addWidget(self.plot_volume_calccol, 5, 1)
restraint_groupbox.layout().addWidget(self.plot_F1_y_scale, 1, 3)
restraint_groupbox.layout().addWidget(self.plot_F2_y_scale, 2, 3)
restraint_groupbox.layout().addWidget(self.plot_CSP_y_scale, 3, 3)
restraint_groupbox.layout().addWidget(self.plot_height_y_scale, 4, 3)
restraint_groupbox.layout().addWidget(self.plot_volume_y_scale, 5, 3)
pre_groupbox = QGroupBox()
pre_groupbox.setTitle("PRE Analysis")
pre_groupbox_layout = QGridLayout()
pre_groupbox.setLayout(pre_groupbox_layout)
self.do_pre_checkbox = LabelledCheckbox(self, "Do PRE Analysis")
self.do_pre_checkbox.setEnabled(False)
self.heat_map_checkbox.setEnabled(False)
self.dpre_checkbox.setEnabled(False)
self.pre_settings = QPushButton("PRE Settings", self)
self.pre_settings.clicked.connect(
partial(self.show_popup, PreAnalysisPopup))
self.pretheo_button = QPushButton("Select theo. PRE Files", self)
self.pretheo_button.clicked.connect(
partial(self.show_popup, PRETheoreticalSelectionPopup))
pre_groupbox.layout().addWidget(self.do_pre_checkbox, 0, 0)
pre_groupbox.layout().addWidget(self.pre_settings, 0, 1)
pre_groupbox.layout().addWidget(self.dpre_checkbox, 1, 0)
pre_groupbox.layout().addWidget(self.dpre_button, 1, 1)
pre_groupbox.layout().addWidget(self.heat_map_checkbox, 2, 0)
pre_groupbox.layout().addWidget(self.heat_map_button, 2, 1)
pre_groupbox.layout().addWidget(self.pretheo_button)
series_plotting_groupbox = QGroupBox()
series_plotting_groupbox.setTitle("Series Plotting")
series_plotting_groupbox_layout = QGridLayout()
series_plotting_groupbox.setLayout(series_plotting_groupbox_layout)
series_plotting_groupbox.layout().addWidget(self.tplot_button, 0, 0, 1,
1)
series_plotting_groupbox.layout().addWidget(self.bar_button, 0, 1, 1,
1)
series_plotting_groupbox.layout().addWidget(self.ext_bar_checkbox, 1,
0, 1, 1)
series_plotting_groupbox.layout().addWidget(self.ext_bar_button, 1, 1,
1, 1)
series_plotting_groupbox.layout().addWidget(self.comp_bar_checkbox, 2,
0, 1, 1)
series_plotting_groupbox.layout().addWidget(self.comp_bar_button, 2, 1,
1, 1)
series_plotting_groupbox.layout().addWidget(self.vert_bar_checkbox, 3,
0, 1, 1)
series_plotting_groupbox.layout().addWidget(self.vert_bar_button, 3, 1,
1, 1)
res_evo_groupbox = QGroupBox()
res_evo_groupbox.setTitle("Residue Evolution Plot")
res_evo_groupbox_layout = QGridLayout()
res_evo_groupbox.setLayout(res_evo_groupbox_layout)
res_evo_groupbox.layout().addWidget(self.revo_button, 0, 0, 1, 2)
res_evo_groupbox.layout().addWidget(self.res_evo_checkbox, 1, 0, 1, 1)
res_evo_groupbox.layout().addWidget(self.res_evo_button, 1, 1, 1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_checkbox, 2, 0, 1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_button, 2, 1, 1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_flower_checkbox, 3, 0,
1, 1)
res_evo_groupbox.layout().addWidget(self.scatter_flower_button, 3, 1,
1, 1)
grid.layout().addWidget(paths_group_box, 0, 0, 3, 16)
grid.layout().addWidget(fasta_groupbox, 7, 4, 4, 4)
grid.layout().addWidget(sidechains_groupbox, 3, 4, 4, 4)
grid.layout().addWidget(cs_norm_groupbox, 7, 0, 4, 4)
grid.layout().addWidget(missing_analysis_groupbox, 3, 0, 4, 4)
grid.layout().addWidget(series_groupbox, 3, 8, 6, 4)
grid.layout().addWidget(figure_groupbox, 3, 12, 6, 4)
grid.layout().addWidget(figure_groupbox, 3, 12, 6, 4)
grid.layout().addWidget(restraint_groupbox, 11, 0, 10, 8)
grid.layout().addWidget(cs_groupbox, 9, 8, 5, 4)
grid.layout().addWidget(pre_groupbox, 9, 12, 5, 4)
grid.layout().addWidget(series_plotting_groupbox, 14, 8, 7, 4)
grid.layout().addWidget(res_evo_groupbox, 14, 12, 7, 4)
grid.layout().addWidget(self.tab_footer, 21, 0, 2, 16)
#
self.load_variables()
def activate_fasta(self, value):
self.variables["fasta_settings"]["applyFASTA"] = value
print(self.variables["fasta_settings"]["applyFASTA"])
def activate_pre(self):
if self.plot_height_ratio.isChecked(
) or self.plot_volume_ratio.isChecked():
self.do_pre_checkbox.setEnabled(True)
self.dpre_checkbox.setEnabled(True)
self.heat_map_checkbox.setEnabled(True)
else:
self.do_pre_checkbox.setEnabled(False)
self.dpre_checkbox.setEnabled(False)
self.heat_map_checkbox.setEnabled(False)
def set_spectrum_path_text(self, path=None):
self.spectrum_path.setText(path)
self.variables["general_settings"]["spectra_path"] = path
self.parent().parent().parent().load_peak_lists(path)
def set_output_path_text(self, path=None):
self.output_path.setText(path)
self.variables["general_settings"]["output_path"] = path
def set_spectrum_path(self, path=None):
if not path:
path = str(
QFileDialog.getExistingDirectory(None, 'Select Directory',
os.getcwd()))
self.set_spectrum_path_text(path)
def set_output_path(self, path=None):
if not path:
path = str(
QFileDialog.getExistingDirectory(None, 'Select Directory',
os.getcwd()))
self.output_path.setText(path)
self.variables["general_settings"]["output_path"] = path
def load_config(self):
msg = QMessageBox()
msg.setIcon(QMessageBox.Warning)
msg.setText("Load Configuration")
msg.setInformativeText("This will overwrite all existing "
"settings and data points!")
msg.setWindowTitle("Reset Experimental Series")
msg.setStandardButtons(QMessageBox.Ok | QMessageBox.Cancel)
retval = msg.exec_()
if retval == QMessageBox.Ok:
self.variables = self.parent().parent().parent().load_config()
self.load_variables()
else:
return
def save_config(self):
general = self.variables["general_settings"]
fitting = self.variables["fitting_settings"]
cs = self.variables["cs_settings"]
csp = self.variables["csp_settings"]
fasta = self.variables["fasta_settings"]
plots_f1 = self.variables["PosF1_settings"]
plots_f2 = self.variables["PosF2_settings"]
plots_height = self.variables["Height_ratio_settings"]
plots_volume = self.variables["Volume_ratio_settings"]
# General Settings
general["spectra_path"] = self.spectrum_path.field.text()
general["output_path"] = self.output_path.field.text()
general["has_sidechains"] = self.has_sidechains_checkbox.isChecked()
general["use_sidechains"] = self.use_sidechains_checkbox.isChecked()
general["fig_height"] = self.figure_height.field.value()
general["fig_width"] = self.figure_width.field.value()
general["fig_dpi"] = self.figure_dpi.field.value()
general["fig_file_type"] = self.figure_format.fields.currentText()
# Fitting Settings
fitting["expand_missing_yy"] = self.expand_missing_yy.isChecked()
fitting["expand_missing_zz"] = self.expand_missing_zz.isChecked()
fitting[
"perform_comparisons"] = self.perform_comparisons_checkbox.isChecked(
)
fitting["do_along_x"] = self.x_checkbox.isChecked()
fitting["do_along_y"] = self.y_checkbox.isChecked()
fitting["do_along_z"] = self.z_checkbox.isChecked()
# CS Settings
cs["perform_cs_correction"] = self.cs_correction.isChecked()
cs["cs_correction_res_ref"] = self.cs_correction_res_ref.field.value()
# CSP Settings
csp["csp_res4alpha"] = round(self.csp_alpha.field.value(), 2)
csp["cs_missing"] = self.csp_missing.fields.currentText()
# FASTA Settings
fasta["applyFASTA"] = self.apply_fasta_checkbox.checkBox.isChecked()
fasta["FASTAstart"] = self.fasta_start.field.value()
self.variables["pre_settings"][
"apply_PRE_analysis"] = self.do_pre_checkbox.isChecked()
# Plot F1 Settings
plots_f1["calcs_PosF1_delta"] = self.plot_F1_data.isChecked()
plots_f1["yy_label_PosF1_delta"] = self.plot_F1_y_label.field.text()
plots_f1["yy_scale_PosF1_delta"] = self.plot_F1_y_scale.field.value()
plots_f1["calccol_name_PosF1_delta"] = self.plot_F1_calccol.field.text(
)
# Plot F2 Settings
plots_f2["calcs_PosF2_delta"] = self.plot_F2_data.isChecked()
plots_f2["yy_label_PosF2_delta"] = self.plot_F2_y_label.field.text()
plots_f2["yy_scale_PosF2_delta"] = self.plot_F2_y_scale.field.value()
plots_f2["calccol_name_PosF2_delta"] = self.plot_F2_calccol.field.text(
)
# Plot CSP Settings
csp["calcs_CSP"] = self.plot_CSP.isChecked()
csp["yy_label_CSP"] = self.plot_CSP_y_label.field.text()
csp["yy_scale_CSP"] = self.plot_CSP_y_scale.field.value()
csp["calccol_name_CSP"] = self.plot_CSP_calccol.field.text()
# Plot Height Settings
plots_height["calcs_Height_ratio"] = self.plot_height_ratio.isChecked()
plots_height[
"yy_label_Height_ratio"] = self.plot_height_y_label.field.text()
plots_height[
"yy_scale_Height_ratio"] = self.plot_height_y_scale.field.value()
plots_height[
"calccol_name_Height_ratio"] = self.plot_height_calccol.field.text(
)
# Plot Volume Settings
plots_volume["calcs_Volume_ratio"] = self.plot_volume_ratio.isChecked()
plots_volume[
"yy_label_Volume_ratio"] = self.plot_volume_y_label.field.text()
plots_volume[
"yy_scale_Volume_ratio"] = self.plot_volume_y_scale.field.value()
plots_volume[
"calccol_name_Volume_ratio"] = self.plot_volume_calccol.field.text(
)
# Plot Booleans
self.variables["plotting_flags"][
"do_ext_bar"] = self.ext_bar_checkbox.isChecked()
self.variables["plotting_flags"][
"do_comp_bar"] = self.comp_bar_checkbox.isChecked()
self.variables["plotting_flags"][
"do_vert_bar"] = self.vert_bar_checkbox.isChecked()
self.variables["plotting_flags"][
"do_res_evo"] = self.res_evo_checkbox.isChecked()
self.variables["plotting_flags"][
"do_cs_scatter"] = self.scatter_checkbox.isChecked()
self.variables["plotting_flags"]["do_cs_scatter_flower"] = \
self.scatter_flower_checkbox.isChecked()
self.variables["plotting_flags"][
"do_heat_map"] = self.heat_map_checkbox.isChecked()
self.variables["plotting_flags"][
"do_DPRE_plot"] = self.dpre_checkbox.isChecked()
def run_farseer_calculation(self):
self.parent().parent().parent().run_farseer_calculation()
def load_variables(self):
general = self.variables["general_settings"]
fitting = self.variables["fitting_settings"]
cs = self.variables["cs_settings"]
csp = self.variables["csp_settings"]
fasta = self.variables["fasta_settings"]
plots_f1 = self.variables["PosF1_settings"]
plots_f2 = self.variables["PosF2_settings"]
plots_height = self.variables["Height_ratio_settings"]
plots_volume = self.variables["Volume_ratio_settings"]
# General Settings
if os.path.exists(general["spectra_path"]):
self.spectrum_path.field.setText(general["spectra_path"])
else:
self.spectrum_path.field.setText(os.getcwd())
if os.path.exists(general["output_path"]):
self.output_path.field.setText(general["output_path"])
else:
self.output_path.field.setText(os.getcwd())
self.has_sidechains_checkbox.setChecked(general["has_sidechains"])
self.use_sidechains_checkbox.setChecked(general["use_sidechains"])
self.figure_height.setValue(general["fig_height"])
self.figure_width.setValue(general["fig_width"])
self.figure_dpi.setValue(general["fig_dpi"])
self.figure_format.select(general["fig_file_type"])
# Fitting Settings
self.expand_missing_yy.setChecked(fitting["expand_missing_yy"])
self.expand_missing_zz.setChecked(fitting["expand_missing_zz"])
self.perform_comparisons_checkbox.setChecked(
fitting["perform_comparisons"])
self.x_checkbox.setChecked(fitting["do_along_x"])
self.y_checkbox.setChecked(fitting["do_along_y"])
self.z_checkbox.setChecked(fitting["do_along_z"])
# CS Settings
self.cs_correction.setChecked(cs["perform_cs_correction"])
self.cs_correction_res_ref.setValue(cs["cs_correction_res_ref"])
# CSP Settings
self.csp_alpha.setValue(csp["csp_res4alpha"])
self.csp_missing.select(csp["cs_missing"])
# FASTA Settings
self.apply_fasta_checkbox.checkBox.setChecked(fasta["applyFASTA"])
self.fasta_start.setValue(fasta["FASTAstart"])
# PRE settings
self.do_pre_checkbox.setChecked(
self.variables["pre_settings"]["apply_PRE_analysis"])
# Plot F1 Settings
self.plot_F1_data.setChecked(plots_f1["calcs_PosF1_delta"])
self.plot_F1_y_label.field.setText(plots_f1["yy_label_PosF1_delta"])
self.plot_F1_y_scale.setValue(plots_f1["yy_scale_PosF1_delta"])
self.plot_F1_calccol.field.setText(
plots_f1["calccol_name_PosF1_delta"])
# Plot F2 Settings
self.plot_F2_data.setChecked(plots_f2["calcs_PosF2_delta"])
self.plot_F2_y_label.field.setText(plots_f2["yy_label_PosF2_delta"])
self.plot_F2_y_scale.setValue(plots_f2["yy_scale_PosF2_delta"])
self.plot_F2_calccol.field.setText(
plots_f2["calccol_name_PosF2_delta"])
# Plot CSP Settings
self.plot_CSP.setChecked(csp["calcs_CSP"])
self.plot_CSP_y_label.field.setText(csp["yy_label_CSP"])
self.plot_CSP_y_scale.setValue(csp["yy_scale_CSP"])
self.plot_CSP_calccol.field.setText(csp["calccol_name_CSP"])
# Plot Height Settings
self.plot_height_ratio.setChecked(plots_height["calcs_Height_ratio"])
self.plot_height_y_label.field.setText(
plots_height["yy_label_Height_ratio"])
self.plot_height_y_scale.setValue(
plots_height["yy_scale_Height_ratio"])
self.plot_height_calccol.field.setText(
plots_height["calccol_name_Height_ratio"])
# Plot Volume Settings
self.plot_volume_ratio.setChecked(plots_volume["calcs_Volume_ratio"])
self.plot_volume_y_label.field.setText(
plots_volume["yy_label_Volume_ratio"])
self.plot_volume_y_scale.setValue(
plots_volume["yy_scale_Volume_ratio"])
self.plot_volume_calccol.field.setText(
plots_volume["calccol_name_Volume_ratio"])
# Plot Booleans
self.ext_bar_checkbox.setChecked(
self.variables["plotting_flags"]["do_ext_bar"])
self.comp_bar_checkbox.setChecked(
self.variables["plotting_flags"]["do_comp_bar"])
self.vert_bar_checkbox.setChecked(
self.variables["plotting_flags"]["do_vert_bar"])
self.res_evo_checkbox.setChecked(
self.variables["plotting_flags"]["do_res_evo"])
self.scatter_checkbox.setChecked(
self.variables["plotting_flags"]["do_cs_scatter"])
self.scatter_flower_checkbox.setChecked(
self.variables["plotting_flags"]["do_cs_scatter_flower"])
self.heat_map_checkbox.setChecked(
self.variables["plotting_flags"]["do_heat_map"])
self.dpre_checkbox.setChecked(
self.variables["plotting_flags"]["do_DPRE_plot"])
def show_popup(self, popup):
popup(self).launch()
class ResidueEvolutionPopup(BasePopup):
"""
A popup for setting Residue Evolution Plot specific settings in the
Farseer-NMR configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Residue Evolution Plot",
settings_key=["res_evo_settings"])
self.res_evo_cols = LabelledSpinBox(self,
text="Columns Per Page",
minimum=1,
step=1)
self.res_evo_rows = LabelledSpinBox(self,
text="Rows Per Page",
minimum=1,
step=1)
self.res_evo_set_x_values = LabelledCheckbox(
self, "Use User Defined X Values?")
self.res_evo_x_ticks_nbins = LabelledSpinBox(self,
text="Number of Ticks",
minimum=1,
step=1)
self.res_evo_x_label = LabelledLineEdit(self, text="X Label")
self.res_evo_plot_line_style = LabelledCombobox(
self, text="Plot Line Style", items=["-", "--", "-.", ":"])
self.res_evo_plot_line_width = LabelledSpinBox(self,
"Line Width",
minimum=0,
step=1)
self.res_evo_line_color = ColourBox(self, text="Line Colour")
self.res_evo_plot_marker_style = LabelledCombobox(
self, text="Marker Style", items=["-", "--", "-.", ":", "o"])
self.res_evo_plot_marker_size = LabelledSpinBox(self,
"Marker Size",
minimum=0,
step=1)
self.res_evo_marker_color = ColourBox(self, text="Marker Colour")
self.res_evo_plot_fill_between = LabelledCheckbox(
self, text="Draw Data Shade")
self.res_evo_plot_fill_colour = ColourBox(self, text="Shade Colour")
self.res_evo_fill_alpha = LabelledDoubleSpinBox(
self, text="Shade Transparency", minimum=0, maximum=1, step=0.1)
self.res_evo_fit_line_colour = ColourBox(self, text="Fit Line Colour")
self.res_evo_fit_line_width = LabelledSpinBox(self,
text="Fit Line Width",
minimum=0,
step=1)
self.res_evo_fit_line_style = LabelledCombobox(
self, text="Fit Line Style", items=["-", "--", "-.", ":", "o"])
self.layout().addWidget(self.res_evo_cols, 0, 0)
self.layout().addWidget(self.res_evo_rows, 1, 0)
self.layout().addWidget(self.res_evo_set_x_values, 2, 0)
self.layout().addWidget(self.res_evo_x_ticks_nbins, 3, 0)
self.layout().addWidget(self.res_evo_x_label, 4, 0)
self.layout().addWidget(self.res_evo_plot_line_style, 5, 0)
self.layout().addWidget(self.res_evo_plot_line_width, 6, 0)
self.layout().addWidget(self.res_evo_line_color, 7, 0)
self.layout().addWidget(self.res_evo_plot_marker_style, 0, 1)
self.layout().addWidget(self.res_evo_plot_marker_size, 1, 1)
self.layout().addWidget(self.res_evo_marker_color, 2, 1)
self.layout().addWidget(self.res_evo_plot_fill_between, 3, 1)
self.layout().addWidget(self.res_evo_plot_fill_colour, 4, 1)
self.layout().addWidget(self.res_evo_fill_alpha, 5, 1)
self.layout().addWidget(self.res_evo_fit_line_colour, 6, 1)
self.layout().addWidget(self.res_evo_fit_line_width, 7, 1)
self.layout().addWidget(self.res_evo_fit_line_style, 8, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 9, 0, 1, 2)
self.get_values()
def get_defaults(self):
# value
self.res_evo_cols.setValue(self.defaults["cols_page"])
self.res_evo_rows.setValue(self.defaults["rows_page"])
self.res_evo_x_ticks_nbins.setValue(self.defaults["x_ticks_nbins"])
self.res_evo_plot_line_width.setValue(self.defaults["line_width"])
self.res_evo_plot_marker_size.setValue(self.defaults["marker_size"])
self.res_evo_fill_alpha.setValue(self.defaults["fill_alpha"])
self.res_evo_fit_line_width.setValue(self.defaults["fit_line_width"])
# checked
self.res_evo_set_x_values.setChecked(self.defaults["set_x_values"])
# text
self.res_evo_x_label.field.setText(self.defaults["x_label"])
# dropdown
self.res_evo_plot_line_style.select(self.defaults["line_style"])
self.res_evo_plot_marker_style.select(self.defaults["marker_style"])
self.res_evo_plot_fill_between.setChecked(
self.defaults["fill_between"])
self.res_evo_fit_line_style.select(self.defaults["fit_line_style"])
# colour
self.res_evo_line_color.get_colour(self.defaults["line_color"])
self.res_evo_marker_color.get_colour(self.defaults["marker_color"])
self.res_evo_plot_fill_colour.get_colour(self.defaults["fill_color"])
self.res_evo_fit_line_colour.get_colour(
self.defaults["fit_line_color"])
def set_values(self):
# value
self.local_variables["cols_page"] = self.res_evo_cols.field.value()
self.local_variables["rows_page"] = self.res_evo_rows.field.value()
self.local_variables[
"x_ticks_nbins"] = self.res_evo_x_ticks_nbins.field.value()
self.local_variables[
"line_width"] = self.res_evo_plot_line_width.field.value()
self.local_variables[
"marker_size"] = self.res_evo_plot_marker_size.field.value()
self.local_variables[
"fill_alpha"] = self.res_evo_fill_alpha.field.value()
self.local_variables[
"fit_line_width"] = self.res_evo_fit_line_width.field.value()
# check
self.local_variables[
"set_x_values"] = self.res_evo_set_x_values.isChecked()
self.local_variables[
"fill_between"] = self.res_evo_plot_fill_between.isChecked()
# text
self.local_variables["x_label"] = self.res_evo_x_label.field.text()
# dropdown
self.local_variables[
"line_style"] = self.res_evo_plot_line_style.fields.currentText()
self.local_variables[
"marker_style"] = self.res_evo_plot_marker_style.fields.currentText(
)
self.local_variables[
"fit_line_style"] = self.res_evo_fit_line_style.fields.currentText(
)
# colours
self.local_variables[
"line_color"] = self.res_evo_line_color.fields.currentText()
self.local_variables[
"marker_color"] = self.res_evo_marker_color.fields.currentText()
self.local_variables[
"fit_line_color"] = self.res_evo_fit_line_colour.fields.currentText(
)
self.local_variables[
"fill_color"] = self.res_evo_plot_fill_colour.fields.currentText()
self.accept()
def get_values(self):
# values
self.res_evo_cols.setValue(self.local_variables["cols_page"])
self.res_evo_rows.setValue(self.local_variables["rows_page"])
self.res_evo_x_ticks_nbins.setValue(
self.local_variables["x_ticks_nbins"])
self.res_evo_plot_line_width.setValue(
self.local_variables["line_width"])
self.res_evo_plot_marker_size.setValue(
self.local_variables["marker_size"])
self.res_evo_fill_alpha.setValue(self.local_variables["fill_alpha"])
self.res_evo_fit_line_width.setValue(
self.local_variables["fit_line_width"])
# checked
self.res_evo_set_x_values.setChecked(
self.local_variables["set_x_values"])
self.res_evo_plot_fill_between.setChecked(
self.local_variables["fill_between"])
# text
self.res_evo_x_label.field.setText(self.local_variables["x_label"])
# select
self.res_evo_plot_line_style.select(self.local_variables["line_style"])
self.res_evo_plot_marker_style.select(
self.local_variables["marker_style"])
self.res_evo_fit_line_style.select(
self.local_variables["fit_line_style"])
# colour
self.res_evo_line_color.get_colour(self.local_variables["line_color"])
self.res_evo_plot_fill_colour.get_colour(
self.local_variables["fill_color"])
self.res_evo_fit_line_colour.get_colour(
self.local_variables["fit_line_color"])
self.res_evo_marker_color.get_colour(
self.local_variables["marker_color"])
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Residue Evolution Plot",
settings_key=["res_evo_settings"])
self.res_evo_cols = LabelledSpinBox(self,
text="Columns Per Page",
minimum=1,
step=1)
self.res_evo_rows = LabelledSpinBox(self,
text="Rows Per Page",
minimum=1,
step=1)
self.res_evo_set_x_values = LabelledCheckbox(
self, "Use User Defined X Values?")
self.res_evo_x_ticks_nbins = LabelledSpinBox(self,
text="Number of Ticks",
minimum=1,
step=1)
self.res_evo_x_label = LabelledLineEdit(self, text="X Label")
self.res_evo_plot_line_style = LabelledCombobox(
self, text="Plot Line Style", items=["-", "--", "-.", ":"])
self.res_evo_plot_line_width = LabelledSpinBox(self,
"Line Width",
minimum=0,
step=1)
self.res_evo_line_color = ColourBox(self, text="Line Colour")
self.res_evo_plot_marker_style = LabelledCombobox(
self, text="Marker Style", items=["-", "--", "-.", ":", "o"])
self.res_evo_plot_marker_size = LabelledSpinBox(self,
"Marker Size",
minimum=0,
step=1)
self.res_evo_marker_color = ColourBox(self, text="Marker Colour")
self.res_evo_plot_fill_between = LabelledCheckbox(
self, text="Draw Data Shade")
self.res_evo_plot_fill_colour = ColourBox(self, text="Shade Colour")
self.res_evo_fill_alpha = LabelledDoubleSpinBox(
self, text="Shade Transparency", minimum=0, maximum=1, step=0.1)
self.res_evo_fit_line_colour = ColourBox(self, text="Fit Line Colour")
self.res_evo_fit_line_width = LabelledSpinBox(self,
text="Fit Line Width",
minimum=0,
step=1)
self.res_evo_fit_line_style = LabelledCombobox(
self, text="Fit Line Style", items=["-", "--", "-.", ":", "o"])
self.layout().addWidget(self.res_evo_cols, 0, 0)
self.layout().addWidget(self.res_evo_rows, 1, 0)
self.layout().addWidget(self.res_evo_set_x_values, 2, 0)
self.layout().addWidget(self.res_evo_x_ticks_nbins, 3, 0)
self.layout().addWidget(self.res_evo_x_label, 4, 0)
self.layout().addWidget(self.res_evo_plot_line_style, 5, 0)
self.layout().addWidget(self.res_evo_plot_line_width, 6, 0)
self.layout().addWidget(self.res_evo_line_color, 7, 0)
self.layout().addWidget(self.res_evo_plot_marker_style, 0, 1)
self.layout().addWidget(self.res_evo_plot_marker_size, 1, 1)
self.layout().addWidget(self.res_evo_marker_color, 2, 1)
self.layout().addWidget(self.res_evo_plot_fill_between, 3, 1)
self.layout().addWidget(self.res_evo_plot_fill_colour, 4, 1)
self.layout().addWidget(self.res_evo_fill_alpha, 5, 1)
self.layout().addWidget(self.res_evo_fit_line_colour, 6, 1)
self.layout().addWidget(self.res_evo_fit_line_width, 7, 1)
self.layout().addWidget(self.res_evo_fit_line_style, 8, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 9, 0, 1, 2)
self.get_values()
class ScatterFlowerPlotPopup(BasePopup):
"""
A popup for setting Scatter Flower Plot specific settings in the
Farseer-NMR configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(
self,
parent,
title="Scatter Flower Plot",
settings_key=["cs_scatter_flower_settings"]
)
self.x_label = LabelledLineEdit(self, "X Label")
self.y_label = LabelledLineEdit(self, "Y Label")
self.mksize = LabelledSpinBox(self, "Mark Size", minimum=0, step=1)
self.color_grad = LabelledCheckbox(self, "Colour Gradient")
self.color_start = ColourBox(self, text="Mark Start Colour")
self.color_end = ColourBox(self, text="Mark End Colour")
self.color_list = LabelledLineEdit(self, "Colour List")
self.x_label_fn = FontComboBox(self, "X Label Font")
self.x_label_fs = LabelledSpinBox(self, "X Label Font Size", minimum=0, step=1)
self.x_label_pad = LabelledDoubleSpinBox(
self,
"X Label Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.x_label_weight = LabelledCombobox(self, text="X Label Font Weight", items=font_weights)
self.y_label_fn = FontComboBox(self, "Y Label Font")
self.y_label_fs = LabelledSpinBox(self, "Y Label Font Size", minimum=0, step=1)
self.y_label_pad = LabelledDoubleSpinBox(
self,
"Y Label Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.y_label_weight = LabelledCombobox(
self,
text="Y Label Font Weight",
items=font_weights
)
self.x_ticks_fn = FontComboBox(self, "X Tick Font")
self.x_ticks_fs = LabelledSpinBox(self, "X Tick Font Size", minimum=0, step=1)
self.x_ticks_pad = LabelledDoubleSpinBox(
self,
"X Tick Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.x_ticks_weight = LabelledCombobox(self, text="X Tick Weight", items=font_weights)
self.x_ticks_rot = LabelledSpinBox(
self,
"X Tick Rotation",
minimum=0,
maximum=360,
step=1
)
self.y_ticks_fn = FontComboBox(self, "Y Tick Font")
self.y_ticks_fs = LabelledSpinBox(self, "Y Tick Font Size", minimum=0, step=1)
self.y_ticks_pad = LabelledDoubleSpinBox(
self,
"Y Tick Padding",
minimum=-100,
maximum=100,
step=0.1
)
self.y_ticks_weight = LabelledCombobox(self, text="Y Tick Weight", items=font_weights)
self.y_ticks_rot = LabelledSpinBox(
self,
"Y Tick Rotation",
minimum=0,
maximum=360,
step=1
)
self.res_label_color = ColourBox(self, text="Residue Label Colour")
# layout
self.layout().addWidget(self.x_label, 0, 0)
self.layout().addWidget(self.y_label, 1, 0)
self.layout().addWidget(self.mksize, 2, 0)
self.layout().addWidget(self.color_grad, 3, 0)
self.layout().addWidget(self.color_start, 4, 0)
self.layout().addWidget(self.color_end, 5, 0)
self.layout().addWidget(self.x_label_fn, 6, 0)
self.layout().addWidget(self.x_label_fs, 7, 0)
self.layout().addWidget(self.color_list, 8, 0)
self.layout().addWidget(self.res_label_color, 8, 1)
self.layout().addWidget(self.x_label_pad, 0, 1)
self.layout().addWidget(self.x_label_weight, 1, 1)
self.layout().addWidget(self.y_label_fn, 2, 1)
self.layout().addWidget(self.y_label_fs, 3, 1)
self.layout().addWidget(self.y_label_pad, 4, 1)
self.layout().addWidget(self.y_label_weight, 5, 1)
self.layout().addWidget(self.x_ticks_fn, 6, 1)
self.layout().addWidget(self.x_ticks_fs, 7, 1)
self.layout().addWidget(self.x_ticks_pad, 0, 2)
self.layout().addWidget(self.x_ticks_weight, 1, 2)
self.layout().addWidget(self.x_ticks_rot, 2, 2)
self.layout().addWidget(self.y_ticks_fn, 3, 2)
self.layout().addWidget(self.y_ticks_fs, 4, 2)
self.layout().addWidget(self.y_ticks_pad, 5, 2)
self.layout().addWidget(self.y_ticks_weight, 6, 2)
self.layout().addWidget(self.y_ticks_rot, 7, 2)
self.buttonBox = QDialogButtonBox(
QDialogButtonBox.Ok |
QDialogButtonBox.Cancel |
QDialogButtonBox.RestoreDefaults
)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(QDialogButtonBox.RestoreDefaults).clicked.connect(self.get_defaults)
self.layout().addWidget(self.buttonBox, 9, 0, 1, 2)
self.get_values()
def get_defaults(self):
# text
self.x_label.field.setText(self.defaults["x_label"])
self.y_label.field.setText(self.defaults["y_label"])
self.color_list.field.setText(','.join(self.defaults["color_list"]))
# value
self.mksize.setValue(self.defaults["mksize"])
self.x_label_fs.setValue(self.defaults["x_label_fs"])
self.x_label_pad.setValue(self.defaults["x_label_pad"])
self.y_label_fs.setValue(self.defaults["y_label_fs"])
self.y_label_pad.setValue(self.defaults["y_label_pad"])
self.x_ticks_fs.setValue(self.defaults["x_ticks_fs"])
self.x_ticks_pad.setValue(self.defaults["x_ticks_pad"])
self.x_ticks_rot.setValue(self.defaults["x_ticks_rot"])
self.y_ticks_fs.setValue(self.defaults["y_ticks_fs"])
self.y_ticks_pad.setValue(self.defaults["y_ticks_pad"])
self.y_ticks_rot.setValue(self.defaults["y_ticks_rot"])
# colour
self.color_start.get_colour(self.defaults["mk_start_color"])
self.color_end.get_colour(self.defaults["mk_end_color"])
self.res_label_color.get_colour(self.defaults["res_label_color"])
# chceked
self.color_grad.setChecked(self.defaults["color_grad"])
# dropdown
self.x_label_fn.select(self.defaults["x_label_fn"])
self.x_label_weight.select(self.defaults["x_label_weight"])
self.y_label_fn.select(self.defaults["y_label_fn"])
self.y_label_weight.select(self.defaults["y_label_weight"])
self.x_ticks_fn.select(self.defaults["x_ticks_fn"])
self.x_ticks_weight.select(self.defaults["x_ticks_weight"])
self.y_ticks_fn.select(self.defaults["y_ticks_fn"])
self.y_ticks_weight.select(self.defaults["y_ticks_weight"])
def set_values(self):
# text
self.local_variables["x_label"] = self.x_label.field.text()
self.local_variables["y_label"] = self.y_label.field.text()
self.local_variables["x_label_fn"] = self.x_label_fn.fields.currentText()
self.local_variables["x_label_weight"] = self.x_label_weight.fields.currentText()
self.local_variables["y_label_fn"] = self.y_label_fn.fields.currentText()
self.local_variables["y_label_weight"] = self.y_label_weight.fields.currentText()
self.local_variables["x_label_fn"] = self.x_label_fn.fields.currentText()
self.local_variables["x_label_weight"] = self.x_label_weight.fields.currentText()
self.local_variables["x_ticks_fn"] = self.x_ticks_fn.fields.currentText()
self.local_variables["x_ticks_weight"] = self.x_ticks_weight.fields.currentText()
self.local_variables["y_ticks_fn"] = self.y_ticks_fn.fields.currentText()
self.local_variables["y_ticks_weight"] = self.y_ticks_weight.fields.currentText()
# value
self.local_variables["mksize"] = self.mksize.field.value()
self.local_variables["x_label_fs"] = self.x_label_fs.field.value()
self.local_variables["x_label_pad"] = self.x_label_pad.field.value()
self.local_variables["y_label_fs"] = self.y_label_fs.field.value()
self.local_variables["y_label_pad"] = self.y_label_pad.field.value()
self.local_variables["x_label_fs"] = self.x_label_fs.field.value()
self.local_variables["x_label_pad"] = self.x_label_pad.field.value()
self.local_variables["x_ticks_fs"] = self.x_ticks_fs.field.value()
self.local_variables["x_ticks_pad"] = self.x_ticks_pad.field.value()
self.local_variables["x_ticks_rot"] = self.x_ticks_rot.field.value()
self.local_variables["y_ticks_fs"] = self.y_ticks_fs.field.value()
self.local_variables["y_ticks_pad"] = self.y_ticks_pad.field.value()
self.local_variables["y_ticks_rot"] = self.y_ticks_rot.field.value()
# check
self.local_variables["color_grad"] = self.color_grad.isChecked()
# colours
self.local_variables["mk_start_color"] = colours[self.color_start.fields.currentText()]
self.local_variables["mk_end_color"] = colours[self.color_end.fields.currentText()]
self.local_variables["res_label_color"] = self.res_label_color.fields.currentText()
self.local_variables["color_list"] = \
[x.translate(translator) for x in self.color_list.field.text().split(',')]
self.accept()
def get_values(self):
# text
self.x_label.field.setText(self.local_variables["x_label"])
self.y_label.field.setText(self.local_variables["y_label"])
self.color_list.field.setText(','.join(self.local_variables["color_list"]))
# value
self.mksize.setValue(self.local_variables["mksize"])
self.x_label_fs.setValue(self.local_variables["x_label_fs"])
self.x_label_pad.setValue(self.local_variables["x_label_pad"])
self.y_label_fs.setValue(self.local_variables["y_label_fs"])
self.y_label_pad.setValue(self.local_variables["y_label_pad"])
self.x_ticks_fs.setValue(self.local_variables["x_ticks_fs"])
self.x_ticks_pad.setValue(self.local_variables["x_ticks_pad"])
self.x_ticks_rot.setValue(self.local_variables["x_ticks_rot"])
self.y_ticks_fs.setValue(self.local_variables["y_ticks_fs"])
self.y_ticks_pad.setValue(self.local_variables["y_ticks_pad"])
self.y_ticks_rot.setValue(self.local_variables["y_ticks_rot"])
# checked
self.color_grad.setChecked(self.local_variables["color_grad"])
# colours
self.color_start.get_colour(self.local_variables["mk_start_color"])
self.color_end.get_colour(self.local_variables["mk_end_color"])
self.res_label_color.get_colour(self.local_variables["res_label_color"])
# dropdown
self.x_label_fn.select(self.local_variables["x_label_fn"])
self.x_label_weight.select(self.local_variables["x_label_weight"])
self.y_label_fn.select(self.local_variables["y_label_fn"])
self.y_label_weight.select(self.local_variables["y_label_weight"])
self.x_ticks_fn.select(self.local_variables["x_ticks_fn"])
self.x_ticks_weight.select(self.local_variables["x_ticks_weight"])
self.y_ticks_fn.select(self.local_variables["y_ticks_fn"])
self.y_ticks_weight.select(self.local_variables["y_ticks_weight"])
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Residue Evolution Plot",
settings_key=["revo_settings"])
self.do_revo_fit = LabelledCheckbox(self,
text="Fit Parameter Evolution")
self.revo_subtitle_fn = FontComboBox(self, text="Subtitle Font")
self.revo_subtitle_fs = LabelledSpinBox(self,
text="Subtitle Font Size",
minimum=0,
step=1)
self.revo_subtitle_pad = LabelledDoubleSpinBox(self,
text="Subtitle Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_subtitle_weight = LabelledCombobox(
self, text="Subtitle Font Weight", items=font_weights)
self.revo_x_label_fn = FontComboBox(self, text="X Label Font")
self.revo_x_label_fs = LabelledSpinBox(self,
text="X Label Font Size",
minimum=0,
step=1)
self.revo_x_label_pad = LabelledDoubleSpinBox(self,
text="X Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_x_label_weight = LabelledCombobox(self,
text="X Label Font Weight",
items=font_weights)
self.revo_y_label_fn = FontComboBox(self, text="Y Label Font Size")
self.revo_y_label_fs = LabelledSpinBox(self,
text="Y Label Font Size",
minimum=0,
step=1)
self.revo_y_label_pad = LabelledSpinBox(self,
text="Y Label Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_y_label_weight = LabelledCombobox(self,
text="Y Label Font Weight",
items=font_weights)
self.revo_x_ticks_fn = FontComboBox(self, text="X Tick Font")
self.revo_x_ticks_fs = LabelledSpinBox(self,
text="X Tick Font Size",
minimum=0,
step=1)
self.revo_x_ticks_pad = LabelledDoubleSpinBox(self,
text="X Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_x_ticks_weight = LabelledCombobox(self,
text="X Tick Font Weight",
items=font_weights)
self.revo_x_ticks_rotation = LabelledDoubleSpinBox(
self, text="X Tick Rotation", minimum=0, maximum=360, step=1)
self.revo_y_ticks_fn = FontComboBox(self, text="Y Tick Font")
self.revo_y_ticks_fs = LabelledSpinBox(self,
text="Y Tick Font Size",
minimum=0,
step=1)
self.revo_y_ticks_pad = LabelledDoubleSpinBox(self,
text="Y Tick Padding",
minimum=-100,
maximum=100,
step=0.1)
self.revo_y_ticks_weight = LabelledCombobox(self,
text="Y Tick Font Weight",
items=font_weights)
self.revo_y_ticks_rot = LabelledSpinBox(self,
text="Y Tick Rotation",
minimum=0,
maximum=360,
step=1)
self.titration_x_values = LabelledLineEdit(self,
text="Titration X Values")
# add widgets
self.layout().addWidget(self.revo_subtitle_fn, 0, 0)
self.layout().addWidget(self.revo_subtitle_fs, 1, 0)
self.layout().addWidget(self.revo_subtitle_pad, 2, 0)
self.layout().addWidget(self.revo_subtitle_weight, 3, 0)
self.layout().addWidget(self.revo_x_label_fn, 4, 0)
self.layout().addWidget(self.revo_x_label_fs, 5, 0)
self.layout().addWidget(self.revo_x_label_pad, 6, 0)
self.layout().addWidget(self.revo_x_label_weight, 7, 0)
self.layout().addWidget(self.revo_y_label_fn, 8, 0)
self.layout().addWidget(self.revo_y_label_fs, 9, 0)
self.layout().addWidget(self.revo_y_label_pad, 10, 0)
self.layout().addWidget(self.titration_x_values, 11, 0)
self.layout().addWidget(self.revo_y_label_weight, 0, 1)
self.layout().addWidget(self.revo_x_ticks_fn, 1, 1)
self.layout().addWidget(self.revo_x_ticks_fs, 2, 1)
self.layout().addWidget(self.revo_x_ticks_pad, 3, 1)
self.layout().addWidget(self.revo_x_ticks_weight, 4, 1)
self.layout().addWidget(self.revo_x_ticks_rotation, 5, 1)
self.layout().addWidget(self.revo_y_ticks_fn, 6, 1)
self.layout().addWidget(self.revo_y_ticks_fs, 7, 1)
self.layout().addWidget(self.revo_y_ticks_pad, 8, 1)
self.layout().addWidget(self.revo_y_ticks_weight, 9, 1)
self.layout().addWidget(self.revo_y_ticks_rot, 10, 1)
self.layout().addWidget(self.do_revo_fit, 11, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 12, 0, 1, 2)
self.get_values()
class ScatterPlotPopup(BasePopup):
"""
A popup for setting Scatter Plot specific settings in the Farseer-NMR
configuration.
Parameters:
parent(QWidget): parent widget for popup.
Methods:
.get_defaults()
.get_values()
.set_values()
"""
def __init__(self, parent=None, **kw):
BasePopup.__init__(self,
parent,
title="Scatter Plot",
settings_key=["cs_scatter_settings"])
self.cs_scatter_cols_page = LabelledSpinBox(self,
"Columns Per Page",
minimum=1,
step=1)
self.cs_scatter_rows_page = LabelledSpinBox(self,
"Rows Per Page",
minimum=1,
step=1)
self.cs_scatter_x_label = LabelledLineEdit(self, "X Label")
self.cs_scatter_y_label = LabelledLineEdit(self, "Y Label")
self.cs_scatter_mksize = LabelledSpinBox(self,
"Mark Size",
minimum=0,
step=1)
self.cs_scatter_scale = LabelledDoubleSpinBox(self,
"Scale",
minimum=0,
step=0.01)
self.cs_scatter_mk_type = LabelledCombobox(self,
text="Mark Type",
items=['color', 'shape'])
self.cs_scatter_mk_start_color = ColourBox(self,
text="Mark Start Colour")
self.cs_scatter_mk_end_color = ColourBox(self, text="Mark End Colour")
self.cs_scatter_markers = LabelledLineEdit(self, "Sequential Markers")
self.cs_scatter_mk_color = LabelledLineEdit(self, text="Mark Colours")
self.cs_scatter_mk_missing_color = ColourBox(self,
"Missing Mark Colour")
self.cs_scatter_mk_edgecolors = LabelledLineEdit(
self, "Marker Edge Colours")
self.cs_scatter_hide_missing = LabelledCheckbox(
self, "Hide Missing Data Points")
# layout
self.layout().addWidget(self.cs_scatter_cols_page, 0, 0)
self.layout().addWidget(self.cs_scatter_rows_page, 1, 0)
self.layout().addWidget(self.cs_scatter_x_label, 2, 0)
self.layout().addWidget(self.cs_scatter_y_label, 3, 0)
self.layout().addWidget(self.cs_scatter_mksize, 4, 0)
self.layout().addWidget(self.cs_scatter_scale, 5, 0)
self.layout().addWidget(self.cs_scatter_mk_type, 6, 0)
self.layout().addWidget(self.cs_scatter_mk_start_color, 0, 1)
self.layout().addWidget(self.cs_scatter_mk_end_color, 1, 1)
self.layout().addWidget(self.cs_scatter_markers, 2, 1)
self.layout().addWidget(self.cs_scatter_mk_color, 3, 1)
self.layout().addWidget(self.cs_scatter_mk_edgecolors, 4, 1)
self.layout().addWidget(self.cs_scatter_mk_missing_color, 5, 1)
self.layout().addWidget(self.cs_scatter_hide_missing, 6, 1)
self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel
| QDialogButtonBox.RestoreDefaults)
self.buttonBox.accepted.connect(self.set_values)
self.buttonBox.rejected.connect(self.reject)
self.buttonBox.button(
QDialogButtonBox.RestoreDefaults).clicked.connect(
self.get_defaults)
self.layout().addWidget(self.buttonBox, 7, 0, 1, 2)
self.get_values()
def get_defaults(self):
# value
self.cs_scatter_cols_page.setValue(self.defaults["cols_page"])
self.cs_scatter_rows_page.setValue(self.defaults["rows_page"])
self.cs_scatter_mksize.setValue(self.defaults["mksize"])
self.cs_scatter_scale.setValue(self.defaults["scale"])
# text
self.cs_scatter_x_label.field.setText(self.defaults["x_label"])
self.cs_scatter_y_label.field.setText(self.defaults["y_label"])
self.cs_scatter_markers.field.setText(','.join(
self.defaults["markers"]))
self.cs_scatter_mk_color.field.setText(','.join(
self.defaults["mk_color"]))
self.cs_scatter_mk_edgecolors.field.setText(','.join(
self.defaults["mk_edgecolors"]))
# dropdown
self.cs_scatter_mk_type.select(self.defaults["mk_type"])
# colour
self.cs_scatter_mk_start_color.get_colour(
self.defaults["mk_start_color"])
self.cs_scatter_mk_end_color.get_colour(self.defaults["mk_end_color"])
self.cs_scatter_mk_missing_color.get_colour(
self.defaults["mk_missing_color"])
# check
self.cs_scatter_hide_missing.setChecked(self.defaults["hide_missing"])
def set_values(self):
# value
self.local_variables[
"cols_page"] = self.cs_scatter_cols_page.field.value()
self.local_variables[
"rows_page"] = self.cs_scatter_rows_page.field.value()
self.local_variables["mksize"] = self.cs_scatter_mksize.field.value()
self.local_variables["scale"] = self.cs_scatter_scale.field.value()
# text
self.local_variables["x_label"] = self.cs_scatter_x_label.field.text()
self.local_variables["y_label"] = self.cs_scatter_y_label.field.text()
self.local_variables["markers"] = \
[x.strip().strip("'") for x in self.cs_scatter_markers.field.text().split(',')]
# dropdown
self.local_variables[
"mk_type"] = self.cs_scatter_mk_type.fields.currentText()
# colour
self.local_variables["mk_start_color"] = \
colours[self.cs_scatter_mk_start_color.fields.currentText()]
self.local_variables["mk_end_color"] = \
colours[self.cs_scatter_mk_end_color.fields.currentText()]
self.local_variables["mk_color"] = \
[x.translate(translator) for x in self.cs_scatter_mk_color.field.text().split(',')]
self.local_variables["mk_edgecolors"] = \
[x.translate(translator) for x in self.cs_scatter_mk_edgecolors.field.text().split(',')]
self.local_variables[
"mk_missing_color"] = self.cs_scatter_mk_missing_color.fields.currentText(
)
# checked
self.local_variables[
"hide_missing"] = self.cs_scatter_hide_missing.isChecked()
self.accept()
def get_values(self):
# values
self.cs_scatter_cols_page.setValue(self.local_variables["cols_page"])
self.cs_scatter_rows_page.setValue(self.local_variables["rows_page"])
self.cs_scatter_mksize.setValue(self.local_variables["mksize"])
self.cs_scatter_scale.setValue(self.local_variables["scale"])
# text
self.cs_scatter_x_label.field.setText(self.local_variables["x_label"])
self.cs_scatter_y_label.field.setText(self.local_variables["y_label"])
self.cs_scatter_markers.field.setText(','.join(
self.local_variables["markers"]))
self.cs_scatter_mk_color.field.setText(','.join(
self.local_variables["mk_color"]))
self.cs_scatter_mk_edgecolors.field.setText(','.join(
self.local_variables["mk_edgecolors"]))
# dropdown
self.cs_scatter_mk_type.select(self.local_variables["mk_type"])
# colours
self.cs_scatter_mk_start_color.get_colour(
self.local_variables["mk_start_color"])
self.cs_scatter_mk_end_color.get_colour(
self.local_variables["mk_end_color"])
self.cs_scatter_mk_missing_color.get_colour(
self.local_variables["mk_missing_color"])
# check
self.cs_scatter_hide_missing.setChecked(
self.local_variables["hide_missing"])
