class FitDialog(QDialog, FitWidgetMixin):
def __init__(self, wintitle=None, icon="guiqwt.svg", edit=True,
toolbar=False, options=None, parent=None, panels=None,
param_cols=1, legend_anchor='TR', auto_fit=False):
QDialog.__init__(self, parent)
self.edit = edit
self.button_layout = None
FitWidgetMixin.__init__(self, wintitle, icon, toolbar, options, panels,
param_cols, legend_anchor, auto_fit)
self.setWindowFlags(Qt.Window)
def setup_widget_layout(self):
FitWidgetMixin.setup_widget_layout(self)
if self.edit:
self.install_button_layout()
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
self.connect(bbox, SIGNAL("accepted()"), SLOT("accept()"))
self.connect(bbox, SIGNAL("rejected()"), SLOT("reject()"))
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
def setup_widget_layout(self):
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
if self.edit:
self.button_layout = QHBoxLayout()
self.install_button_layout()
vlayout.addLayout(self.button_layout)
class CurveDialog(QDialog, CurveWidgetMixin):
"""
Construct a CurveDialog object: plotting dialog box with integrated
plot manager
* wintitle: window title
* icon: window icon
* edit: editable state
* toolbar: show/hide toolbar
* options: options sent to the :py:class:`guiqwt.curve.CurvePlot` object
(dictionary)
* parent: parent widget
* panels (optional): additionnal panels (list, tuple)
"""
def __init__(self, wintitle="guiqwt plot", icon="guiqwt.svg", edit=False,
toolbar=False, options=None, parent=None, panels=None):
if not PYQT5:
QDialog.__init__(self, parent)
self.edit = edit
self.button_box = None
self.button_layout = None
if PYQT5:
super(CurveDialog, self).__init__(parent, wintitle=wintitle,
icon=icon, toolbar=toolbar, options=options, panels=panels)
else:
CurveWidgetMixin.__init__(self, wintitle=wintitle, icon=icon,
toolbar=toolbar, options=options,
panels=panels)
self.setWindowFlags(Qt.Window)
def setup_widget_layout(self):
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
if self.edit:
self.button_layout = QHBoxLayout()
self.install_button_layout()
vlayout.addLayout(self.button_layout)
def install_button_layout(self):
"""
Install standard buttons (OK, Cancel) in dialog button box layout
(:py:attr:`guiqwt.plot.CurveDialog.button_layout`)
This method may be overriden to customize the button box
"""
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
bbox.accepted.connect(self.accept)
bbox.rejected.connect(self.reject)
self.button_layout.addWidget(bbox)
self.button_box = bbox
class CurveDialog(QDialog, CurveWidgetMixin):
"""
Construct a CurveDialog object: plotting dialog box with integrated
plot manager
* wintitle: window title
* icon: window icon
* edit: editable state
* toolbar: show/hide toolbar
* options: options sent to the :py:class:`guiqwt.curve.CurvePlot` object
(dictionary)
* parent: parent widget
* panels (optional): additionnal panels (list, tuple)
"""
def __init__(self, wintitle="guiqwt plot", icon="guiqwt.svg", edit=False,
toolbar=False, options=None, parent=None, panels=None):
if not PYQT5:
QDialog.__init__(self, parent)
self.edit = edit
self.button_box = None
self.button_layout = None
if PYQT5:
super(CurveDialog, self).__init__(parent, wintitle=wintitle,
icon=icon, toolbar=toolbar, options=options, panels=panels)
else:
CurveWidgetMixin.__init__(self, wintitle=wintitle, icon=icon,
toolbar=toolbar, options=options,
panels=panels)
self.setWindowFlags(Qt.Window)
def setup_widget_layout(self):
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
if self.edit:
self.button_layout = QHBoxLayout()
self.install_button_layout()
vlayout.addLayout(self.button_layout)
def install_button_layout(self):
"""
Install standard buttons (OK, Cancel) in dialog button box layout
(:py:attr:`guiqwt.plot.CurveDialog.button_layout`)
This method may be overriden to customize the button box
"""
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
bbox.accepted.connect(self.accept)
bbox.rejected.connect(self.reject)
self.button_layout.addWidget(bbox)
self.button_box = bbox
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
bbox.accepted.connect(self.accept)
bbox.rejected.connect(self.reject)
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
self.connect(bbox, SIGNAL("accepted()"), SLOT("accept()"))
self.connect(bbox, SIGNAL("rejected()"), SLOT("reject()"))
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
def __init__(self, parent=None):
QWidget.__init__(self, parent)
self.layout = QHBoxLayout()
self.widgets = []
for i, label_text in enumerate(["start", "stop", "step"]):
label = QLabel(label_text)
argument_widget = QLineEdit()
self.layout.addWidget(label)
self.layout.addWidget(argument_widget)
self.widgets.append(argument_widget)
self.setLayout(self.layout)
self.slice = slice(None)
class FitDialog(QDialog, FitWidgetMixin):
def __init__(self,
wintitle=None,
icon="guiqwt.svg",
edit=True,
toolbar=False,
options=None,
parent=None,
panels=None,
param_cols=1,
legend_anchor='TR',
auto_fit=False):
if not PYQT5:
QDialog.__init__(self, parent)
self.edit = edit
self.button_layout = None
if PYQT5:
super(FitDialog, self).__init__(parent,
wintitle=wintitle,
icon=icon,
toolbar=toolbar,
options=options,
panels=panels,
param_cols=param_cols,
legend_anchor=legend_anchor,
auto_fit=auto_fit)
else:
FitWidgetMixin.__init__(self, wintitle, icon, toolbar, options,
panels, param_cols, legend_anchor,
auto_fit)
self.setWindowFlags(Qt.Window)
def setup_widget_layout(self):
FitWidgetMixin.setup_widget_layout(self)
if self.edit:
self.install_button_layout()
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
bbox.accepted.connect(self.accept)
bbox.rejected.connect(self.reject)
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
def get_image_layout(imagename, text="", tooltip="", alignment=Qt.AlignLeft):
"""
Construct a QHBoxLayout including image from the file with specified name,
left-aligned text [with specified tooltip]
Return (layout, label)
"""
layout = QHBoxLayout()
if alignment in (Qt.AlignCenter, Qt.AlignRight):
layout.addStretch()
layout.addWidget(get_image_label(imagename))
label = QLabel(text)
label.setToolTip(tooltip)
layout.addWidget(label)
if alignment in (Qt.AlignCenter, Qt.AlignLeft):
layout.addStretch()
return (layout, label)
def setup_widget_layout(self):
self.fit_layout = QHBoxLayout()
self.params_layout = QGridLayout()
params_group = create_groupbox(self,
_("Fit parameters"),
layout=self.params_layout)
if self.auto_fit_enabled:
auto_group = self.create_autofit_group()
self.fit_layout.addWidget(auto_group)
self.fit_layout.addWidget(params_group)
self.plot_layout.addLayout(self.fit_layout, 1, 0)
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
def __init__(self, parent=None,
tdms_file=None,
group_label="Data group",
channel_labels=["X channel",
"Y channel",
"Z channel",
"Z2 channel",
]):
"""
Params
======
twin_z : bool
Allow to select two Z (data) channels
group_label : str:
Label text for group combo box
channel_labels : list of str
Label texts for channel combo boxes
"""
QWidget.__init__(self, parent)
self.widget_layout = QVBoxLayout()
self.group_widgets = []
self.channel_widgets = []
for i, label_text in enumerate([group_label] + channel_labels):
label = QLabel(label_text)
channel_widget = QComboBox()
channel_widget.addItem(label_text)
channel_widget.setMinimumWidth(250)
channel_widget.setDisabled(True)
group_widget = QComboBox()
group_widget.addItem(label_text)
group_widget.setMinimumWidth(250)
group_widget.setDisabled(True)
layout = QHBoxLayout()
layout.addWidget(label)
layout.addWidget(group_widget)
if i != 0:
layout.addWidget(channel_widget)
self.widget_layout.addLayout(layout)
if i == 0:
self.group_combo = group_widget
self.group_combo.currentIndexChanged.connect(self.change_sub_channels)
else:
self.group_widgets.append(group_widget)
self.channel_widgets.append(channel_widget)
group_widget.currentIndexChanged.connect(self._populate_channels)
self.setLayout(self.widget_layout)
self.tdms_file = tdms_file
def setup_widget_layout(self):
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
if self.edit:
self.button_layout = QHBoxLayout()
self.install_button_layout()
vlayout.addLayout(self.button_layout)
def __init__(self, parent=None):
super(ContrastAdjustment, self).__init__(parent)
self.local_manager = None # local manager for the histogram plot
self.manager = None # manager for the associated image plot
# Storing min/max markers for each active image
self.min_markers = {}
self.max_markers = {}
# Select point tools
self.min_select_tool = None
self.max_select_tool = None
style = "<span style=\'color: #444444\'><b>%s</b></span>"
layout, _label = get_image_layout(self.PANEL_ICON,
style % self.PANEL_TITLE,
alignment=Qt.AlignCenter)
layout.setAlignment(Qt.AlignCenter)
vlayout = QVBoxLayout()
vlayout.addLayout(layout)
self.local_manager = PlotManager(self)
self.histogram = LevelsHistogram(parent)
vlayout.addWidget(self.histogram)
self.local_manager.add_plot(self.histogram)
hlayout = QHBoxLayout()
self.setLayout(hlayout)
hlayout.addLayout(vlayout)
self.toolbar = toolbar = QToolBar(self)
toolbar.setOrientation(Qt.Vertical)
# toolbar.setToolButtonStyle(Qt.ToolButtonTextBesideIcon)
hlayout.addWidget(toolbar)
# Add standard plot-related tools to the local manager
lman = self.local_manager
lman.add_tool(SelectTool)
lman.add_tool(BasePlotMenuTool, "item")
lman.add_tool(BasePlotMenuTool, "axes")
lman.add_tool(BasePlotMenuTool, "grid")
lman.add_tool(AntiAliasingTool)
lman.get_default_tool().activate()
self.outliers_param = EliminateOutliersParam(self.PANEL_TITLE)
def __init__(self):
QMainWindow.__init__(self)
self.setWindowTitle("Test")
a = 600
self.resize(int(a), int(a / 1.338))
hlayout = QHBoxLayout()
central_widget = QWidget(self)
central_widget.setLayout(hlayout)
self.setCentralWidget(central_widget)
def _generateFrame(self):
'''
Return the frame containing the presentation, check if the frame was created, otherwise it is created
:return:
'''
# generate the frame if necessary
if self._frame is None:
# Generate frame and define the layout based on the frame
self._frame = QFrame(self._parentFrame)
_layout = QVBoxLayout()
self._frame.setLayout(_layout)
# Add the "Main" group box for this view, if present. It is rendered in foreground
if self._generateGroupBox() is not None:
_layout.addWidget(self._groupbox)
else:
self._frame.setFrameStyle(QFrame.Panel|QFrame.Raised)
self._frame.setLineWidth(1)
# Add to layout eventually the other subview
if self._viewtype == 'Tabs':
_tabs = QTabWidget()
_layout.addWidget(_tabs)
elif self._viewtype == 'Splitter':
_splitter =QSplitter()
_layout.addWidget(_splitter)
else:
_sub_frame = QFrame()
_sub_frame_layout = QHBoxLayout()
_sub_frame.setLayout(_sub_frame_layout)
_layout.addWidget(_sub_frame)
# Add all the sub view as sub frames in the layout
for sw in self._subViewDictionary.values():
sw.setParentView(self._frame)
if self._viewtype == 'Tabs':
_tabs.addTab(sw.getFrame(), sw.viewname)
elif self._viewtype == 'Splitter':
_splitter.addWidget(sw.getFrame())
else:
_sub_frame_layout.addWidget(sw.getFrame())
return self._frame
def __init__(self, parent):
super(FileUi, self).__init__(Qt.Vertical, parent)
layoutWidget = QWidget()
layout = QVBoxLayout()
layoutWidget.setLayout(layout)
self.comment = QPlainTextEdit()
self.fileName = None
self.saveTxtCheck = QCheckBox('Save Txt')
self.saveHdfCheck = QCheckBox('Save HDF5')
self.saveTxtBtn = QPushButton('Save Txt')
self.saveHdfBtn = QPushButton('Save HDF5')
#############
# stream group
streamGroup = QGroupBox('Stream data to file:')
streamGroup.setFlat(True)
streamGroupLayout = QHBoxLayout()
streamGroupLayout.addWidget(self.saveTxtCheck)
streamGroupLayout.addWidget(self.saveHdfCheck)
streamGroup.setLayout(streamGroupLayout)
##############
# save static file
saveGroup = QGroupBox('Save now to file:')
saveGroup.setFlat(True)
saveGroupLayout = QHBoxLayout()
saveGroupLayout.addWidget(self.saveTxtBtn)
saveGroupLayout.addWidget(self.saveHdfBtn)
saveGroup.setLayout(saveGroupLayout)
##############
# put layout together
layout.addWidget(QLabel('Comment:'))
layout.addWidget(self.comment)
layout.addWidget(streamGroup)
layout.addWidget(saveGroup)
self.addWidget(layoutWidget)
##############
# connnect stuff for functionality
self.saveTxtCheck.stateChanged.connect(self.__makeFileName)
self.saveHdfCheck.stateChanged.connect(self.__makeFileName)
##############
# thread for streaming data to file
#self.updateCurrPos.connect(self.__updateCurrPos)
self.stream_thread = QThread() # create the QThread
self.stream_thread.start()
self.stream_worker = GenericWorker(self.__streamFile)
self.stream_worker.moveToThread(self.stream_thread)
def __init__(self):
QMainWindow.__init__(self)
self.setWindowTitle("Signal filtering 2 (guiqwt)")
self.setWindowIcon(get_icon('guiqwt.svg'))
hlayout = QHBoxLayout()
central_widget = QWidget(self)
central_widget.setLayout(hlayout)
self.setCentralWidget(central_widget)
#---guiqwt plot manager
self.manager = PlotManager(self)
def __init__(self, parent):
super(MakeNicerWidget, self).__init__(parent)
self.data = np.array([]) # array which holds data
# Time domain plot
self.tdWidget = DockablePlotWidget(self, CurveWidget)
self.tdWidget.calcFun.addFun('fs', lambda x: x, lambda x: x)
self.tdWidget.calcFun.addFun('µm', lambda x: x * fsDelay * 1e3,
lambda x: x / fsDelay * 1e-3)
self.tdWidget.calcFun.addFun('mm', lambda x: x * fsDelay,
lambda x: x / fsDelay)
tdPlot = self.tdWidget.get_plot()
self.tdSignal = SignalFT(self, plot=tdPlot)
self.tdFit = SignalFT(self, plot=tdPlot, col='r')
# Frequency domain plot
self.fdWidget = DockablePlotWidget(self, CurveWidget)
self.fdWidget.calcFun.addFun('PHz', lambda x: x, lambda x: x)
self.fdWidget.calcFun.addFun('THz', lambda x: x * 1e3,
lambda x: x * 1e-3)
self.fdWidget.calcFun.addFun('µm', lambda x: c0 / x * 1e-9,
lambda x: c0 / x * 1e-9)
self.fdWidget.calcFun.addFun('eV', lambda x: x, lambda x: x)
fdplot = self.fdWidget.get_plot()
self.fdSignal = SignalFT(self, plot=fdplot)
self.fdFit = SignalFT(self, plot=fdplot, col='r')
self.smoothNum = QSpinBox() # gives number of smoothin points
self.smoothNum.setMinimum(1)
self.smoothNum.setSingleStep(2)
# Put things together in layouts
buttonLayout = QGridLayout()
plotLayout = QVBoxLayout()
layout = QHBoxLayout()
plotLayout.addWidget(self.tdWidget)
plotLayout.addWidget(self.fdWidget)
buttonLayout.addWidget(QLabel('Fitting function'), 0, 0)
buttonLayout.addWidget(
QLineEdit("lambda x,A,f,phi: np.sin(2*np.pi*f*x+phi)"), 1, 0, 1, 2)
buttonLayout.addWidget(QLabel('Smooth'), 2, 0)
buttonLayout.addWidget(self.smoothNum, 2, 1)
buttonLayout.setRowStretch(3, 20)
layout.addLayout(buttonLayout)
layout.addLayout(plotLayout)
self.setLayout(layout)
# connect signals
self.updateTdPlot.connect(self.tdSignal.updatePlot)
self.updateTdFitPlot.connect(self.tdFit.updatePlot)
self.updateFdPlot.connect(lambda data: self.fdSignal.updatePlot(
self.fdSignal.computeFFT(data)))
self.updateFdFitPlot.connect(
lambda data: self.fdFit.updatePlot(self.fdFit.computeFFT(data)))
self.smoothNum.valueChanged.connect(self.smoothData)
self.setData()
def __init__(self):
QWidget.__init__(self)
self.setWindowTitle( 'Biofeedback' )
self.button_start = QPushButton()
self.button_start.setText("START")
self.button_stop = QPushButton()
self.button_stop.setText("STOP")
layout = QHBoxLayout(self)
layout.addWidget(self.button_start)
layout.addWidget(self.button_stop)
self.connect(self.button_start, SIGNAL("clicked(bool)"), self.start_session)
self.connect(self.button_stop, SIGNAL("clicked(bool)"), self.stop_session)
self.setLayout(layout)
self.setGeometry(300,100,250,100)
self.show()
#self.datastorage = DataStorage()
#settings = {'db_host':'amber','db_user':'******','db_pwd':'dbrootpass','db_dbname':'biodb'}
#self.datastorage.enableDbStorage(settings)
self.thread = ConnectionThread()
def __init__(self, parent):
QWidget.__init__(self, parent)
layout = QHBoxLayout()
row_nb = 14
cindex = 0
for child in dir(QStyle):
if child.startswith('SP_'):
if cindex == 0:
col_layout = QVBoxLayout()
icon_layout = QHBoxLayout()
icon = get_std_icon(child)
label = QLabel()
label.setPixmap(icon.pixmap(32, 32))
icon_layout.addWidget(label)
icon_layout.addWidget(QLineEdit(child.replace('SP_', '')))
col_layout.addLayout(icon_layout)
cindex = (cindex + 1) % row_nb
if cindex == 0:
layout.addLayout(col_layout)
self.setLayout(layout)
self.setWindowTitle('Standard Platform Icons')
self.setWindowIcon(get_std_icon('TitleBarMenuButton'))
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
self.connect(bbox, SIGNAL("accepted()"), SLOT("accept()"))
self.connect(bbox, SIGNAL("rejected()"), SLOT("reject()"))
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
bbox.accepted.connect(self.accept)
bbox.rejected.connect(self.reject)
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
class FitDialog(QDialog, FitWidgetMixin):
def __init__(self,
wintitle=None,
icon="guiqwt.svg",
edit=True,
toolbar=False,
options=None,
parent=None,
panels=None,
param_cols=1,
legend_anchor='TR',
auto_fit=False):
QDialog.__init__(self, parent)
self.edit = edit
self.button_layout = None
FitWidgetMixin.__init__(self, wintitle, icon, toolbar, options, panels,
param_cols, legend_anchor, auto_fit)
self.setWindowFlags(Qt.Window)
def setup_widget_layout(self):
FitWidgetMixin.setup_widget_layout(self)
if self.edit:
self.install_button_layout()
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
self.connect(bbox, SIGNAL("accepted()"), SLOT("accept()"))
self.connect(bbox, SIGNAL("rejected()"), SLOT("reject()"))
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
class FitDialog(QDialog, FitWidgetMixin):
def __init__(self, wintitle=None, icon="guiqwt.svg", edit=True,
toolbar=False, options=None, parent=None, panels=None,
param_cols=1, legend_anchor='TR', auto_fit=False):
if not PYQT5:
QDialog.__init__(self, parent)
self.edit = edit
self.button_layout = None
if PYQT5:
super(FitDialog, self).__init__(parent, wintitle=wintitle,
icon=icon, toolbar=toolbar, options=options, panels=panels,
param_cols=param_cols, legend_anchor=legend_anchor,
auto_fit=auto_fit)
else:
FitWidgetMixin.__init__(self, wintitle, icon, toolbar, options,
panels, param_cols, legend_anchor,
auto_fit)
self.setWindowFlags(Qt.Window)
def setup_widget_layout(self):
FitWidgetMixin.setup_widget_layout(self)
if self.edit:
self.install_button_layout()
def install_button_layout(self):
bbox = QDialogButtonBox(QDialogButtonBox.Ok | QDialogButtonBox.Cancel)
bbox.accepted.connect(self.accept)
bbox.rejected.connect(self.reject)
self.button_list += [bbox.button(QDialogButtonBox.Ok)]
self.button_layout = QHBoxLayout()
self.button_layout.addStretch()
self.button_layout.addWidget(bbox)
vlayout = self.layout()
vlayout.addSpacing(10)
vlayout.addLayout(self.button_layout)
def __init__(self, parent, options=None):
QWidget.__init__(self, parent=parent)
if options is None:
options = {}
self.imagewidget = ImageWidget(self, **options)
self.imagewidget.register_all_image_tools()
hlayout = QHBoxLayout()
self.add_buttons_to_layout(hlayout)
vlayout = QVBoxLayout()
vlayout.addWidget(self.imagewidget)
vlayout.addLayout(hlayout)
self.setLayout(vlayout)
class QSliceInput(QWidget):
def __init__(self, parent=None):
QWidget.__init__(self, parent)
self.layout = QHBoxLayout()
self.widgets = []
for i, label_text in enumerate(["start", "stop", "step"]):
label = QLabel(label_text)
argument_widget = QLineEdit()
self.layout.addWidget(label)
self.layout.addWidget(argument_widget)
self.widgets.append(argument_widget)
self.setLayout(self.layout)
self.slice = slice(None)
def setSlice(self, slice):
if slice is None:
return False
self.widgets[0].setText(str(slice.start))
self.widgets[1].setText(str(slice.stop))
self.widgets[2].setText(str(slice.step))
def getSlice(self):
return slice(*[int(w.text()) for w in self.widgets])
def setup_widget_layout(self):
self.fit_layout = QHBoxLayout()
self.params_layout = QGridLayout()
params_group = create_groupbox(self, _("Fit parameters"),
layout=self.params_layout)
if self.auto_fit_enabled:
auto_group = self.create_autofit_group()
self.fit_layout.addWidget(auto_group)
self.fit_layout.addWidget(params_group)
self.plot_layout.addLayout(self.fit_layout, 1, 0)
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
def __init__(self, parent):
QWidget.__init__(self, parent)
layout = QHBoxLayout()
row_nb = 14
cindex = 0
for child in dir(QStyle):
if child.startswith('SP_'):
if cindex == 0:
col_layout = QVBoxLayout()
icon_layout = QHBoxLayout()
icon = get_std_icon(child)
label = QLabel()
label.setPixmap(icon.pixmap(32, 32))
icon_layout.addWidget( label )
icon_layout.addWidget( QLineEdit(child.replace('SP_', '')) )
col_layout.addLayout(icon_layout)
cindex = (cindex+1) % row_nb
if cindex == 0:
layout.addLayout(col_layout)
self.setLayout(layout)
self.setWindowTitle('Standard Platform Icons')
self.setWindowIcon(get_std_icon('TitleBarMenuButton'))
def __init__(self, parent=None):
super(ContrastAdjustment, self).__init__(parent)
self.local_manager = None # local manager for the histogram plot
self.manager = None # manager for the associated image plot
# Storing min/max markers for each active image
self.min_markers = {}
self.max_markers = {}
# Select point tools
self.min_select_tool = None
self.max_select_tool = None
style = "<span style=\'color: #444444\'><b>%s</b></span>"
layout, _label = get_image_layout(self.PANEL_ICON,
style % self.PANEL_TITLE,
alignment=Qt.AlignCenter)
layout.setAlignment(Qt.AlignCenter)
vlayout = QVBoxLayout()
vlayout.addLayout(layout)
self.local_manager = PlotManager(self)
self.histogram = LevelsHistogram(parent)
vlayout.addWidget(self.histogram)
self.local_manager.add_plot(self.histogram)
hlayout = QHBoxLayout()
self.setLayout(hlayout)
hlayout.addLayout(vlayout)
self.toolbar = toolbar = QToolBar(self)
toolbar.setOrientation(Qt.Vertical)
# toolbar.setToolButtonStyle(Qt.ToolButtonTextBesideIcon)
hlayout.addWidget(toolbar)
# Add standard plot-related tools to the local manager
lman = self.local_manager
lman.add_tool(SelectTool)
lman.add_tool(BasePlotMenuTool, "item")
lman.add_tool(BasePlotMenuTool, "axes")
lman.add_tool(BasePlotMenuTool, "grid")
lman.add_tool(AntiAliasingTool)
lman.get_default_tool().activate()
self.outliers_param = EliminateOutliersParam(self.PANEL_TITLE)
def __init__(self, parent):
QWidget.__init__(self, parent)
font = QFont(get_family(MONOSPACE), 10, QFont.Normal)
info_icon = QLabel()
icon = get_std_icon('MessageBoxInformation').pixmap(24, 24)
info_icon.setPixmap(icon)
info_icon.setFixedWidth(32)
info_icon.setAlignment(Qt.AlignTop)
self.desc_label = QLabel()
self.desc_label.setWordWrap(True)
self.desc_label.setAlignment(Qt.AlignTop)
self.desc_label.setFont(font)
group_desc = QGroupBox(_("Description"), self)
layout = QHBoxLayout()
layout.addWidget(info_icon)
layout.addWidget(self.desc_label)
group_desc.setLayout(layout)
self.editor = CodeEditor(self)
self.editor.setup_editor(linenumbers=True, font=font)
self.editor.setReadOnly(True)
group_code = QGroupBox(_("Source code"), self)
layout = QVBoxLayout()
layout.addWidget(self.editor)
group_code.setLayout(layout)
self.run_button = QPushButton(get_icon("apply.png"),
_("Run this script"), self)
self.quit_button = QPushButton(get_icon("exit.png"), _("Quit"), self)
hlayout = QHBoxLayout()
hlayout.addWidget(self.run_button)
hlayout.addStretch()
hlayout.addWidget(self.quit_button)
vlayout = QVBoxLayout()
vlayout.addWidget(group_desc)
vlayout.addWidget(group_code)
vlayout.addLayout(hlayout)
self.setLayout(vlayout)
def __init__(self, parent=None):
QWidget.__init__(self, parent)
self.widget_layout = QVBoxLayout()
title_layout = QHBoxLayout()
title_layout.addStretch()
style = "<span style=\'color: #444444\'><b>%s</b></span>"
title = QLabel(style % "Operations")
title_layout.addWidget(title)
title_layout.addStretch()
self.widget_layout.addLayout(title_layout)
# Create ListWidget and add 10 items to move around.
self.list_widget = QListWidget()
# self.list_widget.setDragDropMode(QAbstractItemView.InternalMove)
self.list_widget.setSelectionMode(QAbstractItemView.ExtendedSelection)
self.list_widget.setSortingEnabled(False)
self.list_widget.currentItemChanged.connect(self._populate_settings_update)
self.widget_layout.addWidget(self.list_widget)
otitle_layout = QHBoxLayout()
otitle_layout.addStretch()
otitle = QLabel(style % "Operation settings")
otitle_layout.addWidget(otitle)
otitle_layout.addStretch()
self.widget_layout.addLayout(otitle_layout)
self.operations_combo = QComboBox()
self.operations_combo.currentIndexChanged.connect(self._populate_settings_add)
self.widget_layout.addWidget(self.operations_combo)
self.operation_settings = GenericOperationWidget()
self.widget_layout.addWidget(self.operation_settings)
self.toolbar = QToolBar()
self.toolbar.addAction(get_icon('apply.png'), "Apply/Replace",
self._change_operation)
self.toolbar.addAction(get_icon('editors/edit_add.png'), "Add after",
self._add_operation)
self.toolbar.addAction(get_icon('trash.png'), "Remove",
self._remove_operation)
self.widget_layout.addWidget(self.toolbar)
self.setLayout(self.widget_layout)
def setup_widget(self):
layout = QHBoxLayout()
layout.addWidget(self.cs_plot)
layout.addWidget(self.toolbar)
layout.setContentsMargins(0, 0, 0, 0)
self.setLayout(layout)
def __init__(self, parent):
QWidget.__init__(self, parent)
font = QFont(get_family(MONOSPACE), 10, QFont.Normal)
info_icon = QLabel()
icon = get_std_icon('MessageBoxInformation').pixmap(24, 24)
info_icon.setPixmap(icon)
info_icon.setFixedWidth(32)
info_icon.setAlignment(Qt.AlignTop)
self.service_status_label = QLabel()
self.service_status_label.setWordWrap(True)
self.service_status_label.setAlignment(Qt.AlignTop)
self.service_status_label.setFont(font)
self.desc_label = QLabel()
self.desc_label.setWordWrap(True)
self.desc_label.setAlignment(Qt.AlignTop)
self.desc_label.setFont(font)
self.group_desc = QGroupBox("Description", self)
layout = QHBoxLayout()
layout.addWidget(info_icon)
layout.addWidget(self.desc_label)
layout.addStretch()
layout.addWidget(self.service_status_label)
self.group_desc.setLayout(layout)
self.editor = CodeEditor(self)
self.editor.setup_editor(linenumbers=True, font=font)
self.editor.setReadOnly(False)
self.group_code = QGroupBox("Source code", self)
layout = QVBoxLayout()
layout.addWidget(self.editor)
self.group_code.setLayout(layout)
self.enable_button = QPushButton(get_icon("apply.png"), "Enable", self)
self.save_button = QPushButton(get_icon("filesave.png"), "Save", self)
self.disable_button = QPushButton(get_icon("delete.png"), "Disable",
self)
self.refresh_button = QPushButton(get_icon("restart.png"), "Refresh",
self)
hlayout = QHBoxLayout()
hlayout.addWidget(self.save_button)
hlayout.addWidget(self.enable_button)
hlayout.addWidget(self.disable_button)
hlayout.addWidget(self.refresh_button)
vlayout = QVBoxLayout()
vlayout.addWidget(self.group_desc)
vlayout.addWidget(self.group_code)
self.html_window = HTMLWindow()
vlayout.addWidget(self.html_window)
vlayout.addLayout(hlayout)
self.setLayout(vlayout)
self.current_file = None
def __init__(self, parent):
QWidget.__init__(self, parent)
font = QFont(get_family(MONOSPACE), 10, QFont.Normal)
info_icon = QLabel()
icon = get_std_icon('MessageBoxInformation').pixmap(24, 24)
info_icon.setPixmap(icon)
info_icon.setFixedWidth(32)
info_icon.setAlignment(Qt.AlignTop)
self.service_status_label = QLabel()
self.service_status_label.setWordWrap(True)
self.service_status_label.setAlignment(Qt.AlignTop)
self.service_status_label.setFont(font)
self.desc_label = QLabel()
self.desc_label.setWordWrap(True)
self.desc_label.setAlignment(Qt.AlignTop)
self.desc_label.setFont(font)
group_desc = QGroupBox("Description", self)
layout = QHBoxLayout()
layout.addWidget(info_icon)
layout.addWidget(self.desc_label)
layout.addStretch()
layout.addWidget(self.service_status_label )
group_desc.setLayout(layout)
self.editor = CodeEditor(self)
self.editor.setup_editor(linenumbers=True, font=font)
self.editor.setReadOnly(False)
group_code = QGroupBox("Source code", self)
layout = QVBoxLayout()
layout.addWidget(self.editor)
group_code.setLayout(layout)
self.enable_button = QPushButton(get_icon("apply.png"),
"Enable", self)
self.save_button = QPushButton(get_icon("filesave.png"),
"Save", self)
self.edit_datadog_conf_button = QPushButton(get_icon("edit.png"),
"Edit agent settings", self)
self.disable_button = QPushButton(get_icon("delete.png"),
"Disable", self)
self.view_log_button = QPushButton(get_icon("txt.png"),
"View log", self)
self.menu_button = QPushButton(get_icon("settings.png"),
"Manager", self)
hlayout = QHBoxLayout()
hlayout.addWidget(self.save_button)
hlayout.addStretch()
hlayout.addWidget(self.enable_button)
hlayout.addStretch()
hlayout.addWidget(self.disable_button)
hlayout.addStretch()
hlayout.addWidget(self.edit_datadog_conf_button)
hlayout.addStretch()
hlayout.addWidget(self.view_log_button)
hlayout.addStretch()
hlayout.addWidget(self.menu_button)
vlayout = QVBoxLayout()
vlayout.addWidget(group_desc)
vlayout.addWidget(group_code)
vlayout.addLayout(hlayout)
self.setLayout(vlayout)
self.current_file = None
def __init__(self, parent):
QWidget.__init__(self, parent)
font = QFont(get_family(MONOSPACE), 10, QFont.Normal)
info_icon = QLabel()
icon = get_std_icon("MessageBoxInformation").pixmap(24, 24)
info_icon.setPixmap(icon)
info_icon.setFixedWidth(32)
info_icon.setAlignment(Qt.AlignTop)
self.service_status_label = QLabel()
self.service_status_label.setWordWrap(True)
self.service_status_label.setAlignment(Qt.AlignTop)
self.service_status_label.setFont(font)
self.desc_label = QLabel()
self.desc_label.setWordWrap(True)
self.desc_label.setAlignment(Qt.AlignTop)
self.desc_label.setFont(font)
self.group_desc = QGroupBox("Description", self)
layout = QHBoxLayout()
layout.addWidget(info_icon)
layout.addWidget(self.desc_label)
layout.addStretch()
layout.addWidget(self.service_status_label)
self.group_desc.setLayout(layout)
self.editor = CodeEditor(self)
self.editor.setup_editor(linenumbers=True, font=font)
self.editor.setReadOnly(False)
self.group_code = QGroupBox("Source code", self)
layout = QVBoxLayout()
layout.addWidget(self.editor)
self.group_code.setLayout(layout)
self.enable_button = QPushButton(get_icon("apply.png"), "Enable", self)
self.save_button = QPushButton(get_icon("filesave.png"), "Save", self)
self.disable_button = QPushButton(get_icon("delete.png"), "Disable", self)
self.refresh_button = QPushButton(get_icon("restart.png"), "Refresh", self)
hlayout = QHBoxLayout()
hlayout.addWidget(self.save_button)
hlayout.addWidget(self.enable_button)
hlayout.addWidget(self.disable_button)
hlayout.addWidget(self.refresh_button)
vlayout = QVBoxLayout()
vlayout.addWidget(self.group_desc)
vlayout.addWidget(self.group_code)
self.html_window = HTMLWindow()
vlayout.addWidget(self.html_window)
vlayout.addLayout(hlayout)
self.setLayout(vlayout)
self.current_file = None
def __init__(self):
QWidget.__init__(self)
self.setWindowTitle("Signal filtering (guiqwt)")
self.setWindowIcon(get_icon('guiqwt.svg'))
hlayout = QHBoxLayout()
self.setLayout(hlayout)
def setup_widget(self):
layout = QHBoxLayout()
layout.addWidget(self.cs_plot)
layout.addWidget(self.toolbar)
layout.setContentsMargins(0, 0, 0, 0)
self.setLayout(layout)
def addWidget(self, widget):
QHBoxLayout.addWidget(self, widget)
self.widgets.append(widget)
def __init__(self):
QHBoxLayout.__init__(self)
self.widgets = []
class FitWidgetMixin(CurveWidgetMixin):
def __init__(self,
wintitle="guiqwt plot",
icon="guiqwt.svg",
toolbar=False,
options=None,
panels=None,
param_cols=1,
legend_anchor='TR',
auto_fit=True):
if wintitle is None:
wintitle = _('Curve fitting')
self.x = None
self.y = None
self.fitfunc = None
self.fitargs = None
self.fitkwargs = None
self.fitparams = None
self.autofit_prm = None
self.data_curve = None
self.fit_curve = None
self.legend = None
self.legend_anchor = legend_anchor
self.xrange = None
self.show_xrange = False
self.param_cols = param_cols
self.auto_fit_enabled = auto_fit
self.button_list = [] # list of buttons to be disabled at startup
self.fit_layout = None
self.params_layout = None
CurveWidgetMixin.__init__(self,
wintitle=wintitle,
icon=icon,
toolbar=toolbar,
options=options,
panels=panels)
self.refresh()
# QWidget API --------------------------------------------------------------
def resizeEvent(self, event):
QWidget.resizeEvent(self, event)
self.get_plot().replot()
# CurveWidgetMixin API -----------------------------------------------------
def setup_widget_layout(self):
self.fit_layout = QHBoxLayout()
self.params_layout = QGridLayout()
params_group = create_groupbox(self,
_("Fit parameters"),
layout=self.params_layout)
if self.auto_fit_enabled:
auto_group = self.create_autofit_group()
self.fit_layout.addWidget(auto_group)
self.fit_layout.addWidget(params_group)
self.plot_layout.addLayout(self.fit_layout, 1, 0)
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
def create_plot(self, options):
CurveWidgetMixin.create_plot(self, options)
for plot in self.get_plots():
plot.SIG_RANGE_CHANGED.connect(self.range_changed)
# Public API ---------------------------------------------------------------
def set_data(self,
x,
y,
fitfunc=None,
fitparams=None,
fitargs=None,
fitkwargs=None):
if self.fitparams is not None and fitparams is not None:
self.clear_params_layout()
self.x = x
self.y = y
if fitfunc is not None:
self.fitfunc = fitfunc
if fitparams is not None:
self.fitparams = fitparams
if fitargs is not None:
self.fitargs = fitargs
if fitkwargs is not None:
self.fitkwargs = fitkwargs
self.autofit_prm = AutoFitParam(title=_("Automatic fitting options"))
self.autofit_prm.xmin = x.min()
self.autofit_prm.xmax = x.max()
self.compute_imin_imax()
if self.fitparams is not None and fitparams is not None:
self.populate_params_layout()
self.refresh()
def set_fit_data(self, fitfunc, fitparams, fitargs=None, fitkwargs=None):
if self.fitparams is not None:
self.clear_params_layout()
self.fitfunc = fitfunc
self.fitparams = fitparams
self.fitargs = fitargs
self.fitkwargs = fitkwargs
self.populate_params_layout()
self.refresh()
def clear_params_layout(self):
for i, param in enumerate(self.fitparams):
for widget in param.get_widgets():
if widget is not None:
self.params_layout.removeWidget(widget)
widget.hide()
def populate_params_layout(self):
add_fitparam_widgets_to(self.params_layout,
self.fitparams,
self.refresh,
param_cols=self.param_cols)
def create_autofit_group(self):
auto_button = QPushButton(get_icon('apply.png'), _("Run"), self)
auto_button.clicked.connect(self.autofit)
autoprm_button = QPushButton(get_icon('settings.png'), _("Settings"),
self)
autoprm_button.clicked.connect(self.edit_parameters)
xrange_button = QPushButton(get_icon('xrange.png'), _("Bounds"), self)
xrange_button.setCheckable(True)
xrange_button.toggled.connect(self.toggle_xrange)
auto_layout = QVBoxLayout()
auto_layout.addWidget(auto_button)
auto_layout.addWidget(autoprm_button)
auto_layout.addWidget(xrange_button)
self.button_list += [auto_button, autoprm_button, xrange_button]
return create_groupbox(self, _("Automatic fit"), layout=auto_layout)
def get_fitfunc_arguments(self):
"""Return fitargs and fitkwargs"""
fitargs = self.fitargs
if self.fitargs is None:
fitargs = []
fitkwargs = self.fitkwargs
if self.fitkwargs is None:
fitkwargs = {}
return fitargs, fitkwargs
def refresh(self, slider_value=None):
"""Refresh Fit Tool dialog box"""
# Update button states
enable = self.x is not None and self.y is not None \
and self.x.size > 0 and self.y.size > 0 \
and self.fitfunc is not None and self.fitparams is not None \
and len(self.fitparams) > 0
for btn in self.button_list:
btn.setEnabled(enable)
if not enable:
# Fit widget is not yet configured
return
fitargs, fitkwargs = self.get_fitfunc_arguments()
yfit = self.fitfunc(self.x, [p.value for p in self.fitparams],
*fitargs, **fitkwargs)
plot = self.get_plot()
if self.legend is None:
self.legend = make.legend(anchor=self.legend_anchor)
plot.add_item(self.legend)
if self.xrange is None:
self.xrange = make.range(0., 1.)
plot.add_item(self.xrange)
self.xrange.set_range(self.autofit_prm.xmin, self.autofit_prm.xmax)
self.xrange.setVisible(self.show_xrange)
if self.data_curve is None:
self.data_curve = make.curve([], [],
_("Data"),
color="b",
linewidth=2)
plot.add_item(self.data_curve)
self.data_curve.set_data(self.x, self.y)
if self.fit_curve is None:
self.fit_curve = make.curve([], [],
_("Fit"),
color="r",
linewidth=2)
plot.add_item(self.fit_curve)
self.fit_curve.set_data(self.x, yfit)
plot.replot()
plot.disable_autoscale()
def range_changed(self, xrange_obj, xmin, xmax):
self.autofit_prm.xmin, self.autofit_prm.xmax = xmin, xmax
self.compute_imin_imax()
def toggle_xrange(self, state):
self.xrange.setVisible(state)
plot = self.get_plot()
plot.replot()
if state:
plot.set_active_item(self.xrange)
self.show_xrange = state
def edit_parameters(self):
if self.autofit_prm.edit(parent=self):
self.xrange.set_range(self.autofit_prm.xmin, self.autofit_prm.xmax)
plot = self.get_plot()
plot.replot()
self.compute_imin_imax()
def compute_imin_imax(self):
self.i_min = self.x.searchsorted(self.autofit_prm.xmin)
self.i_max = self.x.searchsorted(self.autofit_prm.xmax, side='right')
def errorfunc(self, params):
x = self.x[self.i_min:self.i_max]
y = self.y[self.i_min:self.i_max]
fitargs, fitkwargs = self.get_fitfunc_arguments()
return y - self.fitfunc(x, params, *fitargs, **fitkwargs)
def autofit(self):
meth = self.autofit_prm.method
x0 = np.array([p.value for p in self.fitparams])
if meth == "lq":
x = self.autofit_lq(x0)
elif meth == "simplex":
x = self.autofit_simplex(x0)
elif meth == "powel":
x = self.autofit_powel(x0)
elif meth == "bfgs":
x = self.autofit_bfgs(x0)
elif meth == "l_bfgs_b":
x = self.autofit_l_bfgs(x0)
elif meth == "cg":
x = self.autofit_cg(x0)
else:
return
for v, p in zip(x, self.fitparams):
p.value = v
self.refresh()
for prm in self.fitparams:
prm.update()
def get_norm_func(self):
prm = self.autofit_prm
err_norm = eval(prm.err_norm)
def func(params):
err = np.linalg.norm(self.errorfunc(params), err_norm)
return err
return func
def autofit_simplex(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin
x = fmin(self.get_norm_func(), x0, xtol=prm.xtol, ftol=prm.ftol)
return x
def autofit_powel(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin_powell
x = fmin_powell(self.get_norm_func(), x0, xtol=prm.xtol, ftol=prm.ftol)
return x
def autofit_bfgs(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin_bfgs
x = fmin_bfgs(self.get_norm_func(),
x0,
gtol=prm.gtol,
norm=eval(prm.norm))
return x
def autofit_l_bfgs(self, x0):
prm = self.autofit_prm
bounds = [(p.min, p.max) for p in self.fitparams]
from scipy.optimize import fmin_l_bfgs_b
x, _f, _d = fmin_l_bfgs_b(self.get_norm_func(),
x0,
pgtol=prm.gtol,
approx_grad=1,
bounds=bounds)
return x
def autofit_cg(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin_cg
x = fmin_cg(self.get_norm_func(),
x0,
gtol=prm.gtol,
norm=eval(prm.norm))
return x
def autofit_lq(self, x0):
prm = self.autofit_prm
def func(params):
err = self.errorfunc(params)
return err
from scipy.optimize import leastsq
x, _ier = leastsq(func, x0, xtol=prm.xtol, ftol=prm.ftol)
return x
def get_values(self):
"""Convenience method to get fit parameter values"""
return [param.value for param in self.fitparams]
class FitWidgetMixin(CurveWidgetMixin):
def __init__(self, wintitle="guiqwt plot", icon="guiqwt.svg",
toolbar=False, options=None, panels=None, param_cols=1,
legend_anchor='TR', auto_fit=True):
if wintitle is None:
wintitle = _('Curve fitting')
self.x = None
self.y = None
self.fitfunc = None
self.fitargs = None
self.fitkwargs = None
self.fitparams = None
self.autofit_prm = None
self.data_curve = None
self.fit_curve = None
self.legend = None
self.legend_anchor = legend_anchor
self.xrange = None
self.show_xrange = False
self.param_cols = param_cols
self.auto_fit_enabled = auto_fit
self.button_list = [] # list of buttons to be disabled at startup
self.fit_layout = None
self.params_layout = None
CurveWidgetMixin.__init__(self, wintitle=wintitle, icon=icon,
toolbar=toolbar, options=options,
panels=panels)
self.refresh()
# QWidget API --------------------------------------------------------------
def resizeEvent(self, event):
QWidget.resizeEvent(self, event)
self.get_plot().replot()
# CurveWidgetMixin API -----------------------------------------------------
def setup_widget_layout(self):
self.fit_layout = QHBoxLayout()
self.params_layout = QGridLayout()
params_group = create_groupbox(self, _("Fit parameters"),
layout=self.params_layout)
if self.auto_fit_enabled:
auto_group = self.create_autofit_group()
self.fit_layout.addWidget(auto_group)
self.fit_layout.addWidget(params_group)
self.plot_layout.addLayout(self.fit_layout, 1, 0)
vlayout = QVBoxLayout(self)
vlayout.addWidget(self.toolbar)
vlayout.addLayout(self.plot_layout)
self.setLayout(vlayout)
def create_plot(self, options):
CurveWidgetMixin.create_plot(self, options)
for plot in self.get_plots():
plot.SIG_RANGE_CHANGED.connect(self.range_changed)
# Public API ---------------------------------------------------------------
def set_data(self, x, y, fitfunc=None, fitparams=None,
fitargs=None, fitkwargs=None):
if self.fitparams is not None and fitparams is not None:
self.clear_params_layout()
self.x = x
self.y = y
if fitfunc is not None:
self.fitfunc = fitfunc
if fitparams is not None:
self.fitparams = fitparams
if fitargs is not None:
self.fitargs = fitargs
if fitkwargs is not None:
self.fitkwargs = fitkwargs
self.autofit_prm = AutoFitParam(title=_("Automatic fitting options"))
self.autofit_prm.xmin = x.min()
self.autofit_prm.xmax = x.max()
self.compute_imin_imax()
if self.fitparams is not None and fitparams is not None:
self.populate_params_layout()
self.refresh()
def set_fit_data(self, fitfunc, fitparams, fitargs=None, fitkwargs=None):
if self.fitparams is not None:
self.clear_params_layout()
self.fitfunc = fitfunc
self.fitparams = fitparams
self.fitargs = fitargs
self.fitkwargs = fitkwargs
self.populate_params_layout()
self.refresh()
def clear_params_layout(self):
for i, param in enumerate(self.fitparams):
for widget in param.get_widgets():
if widget is not None:
self.params_layout.removeWidget(widget)
widget.hide()
def populate_params_layout(self):
add_fitparam_widgets_to(self.params_layout, self.fitparams,
self.refresh, param_cols=self.param_cols)
def create_autofit_group(self):
auto_button = QPushButton(get_icon('apply.png'), _("Run"), self)
auto_button.clicked.connect(self.autofit)
autoprm_button = QPushButton(get_icon('settings.png'), _("Settings"),
self)
autoprm_button.clicked.connect(self.edit_parameters)
xrange_button = QPushButton(get_icon('xrange.png'), _("Bounds"), self)
xrange_button.setCheckable(True)
xrange_button.toggled.connect(self.toggle_xrange)
auto_layout = QVBoxLayout()
auto_layout.addWidget(auto_button)
auto_layout.addWidget(autoprm_button)
auto_layout.addWidget(xrange_button)
self.button_list += [auto_button, autoprm_button, xrange_button]
return create_groupbox(self, _("Automatic fit"), layout=auto_layout)
def get_fitfunc_arguments(self):
"""Return fitargs and fitkwargs"""
fitargs = self.fitargs
if self.fitargs is None:
fitargs = []
fitkwargs = self.fitkwargs
if self.fitkwargs is None:
fitkwargs = {}
return fitargs, fitkwargs
def refresh(self, slider_value=None):
"""Refresh Fit Tool dialog box"""
# Update button states
enable = self.x is not None and self.y is not None \
and self.x.size > 0 and self.y.size > 0 \
and self.fitfunc is not None and self.fitparams is not None \
and len(self.fitparams) > 0
for btn in self.button_list:
btn.setEnabled(enable)
if not enable:
# Fit widget is not yet configured
return
fitargs, fitkwargs = self.get_fitfunc_arguments()
yfit = self.fitfunc(self.x, [p.value for p in self.fitparams],
*fitargs, **fitkwargs)
plot = self.get_plot()
if self.legend is None:
self.legend = make.legend(anchor=self.legend_anchor)
plot.add_item(self.legend)
if self.xrange is None:
self.xrange = make.range(0., 1.)
plot.add_item(self.xrange)
self.xrange.set_range(self.autofit_prm.xmin, self.autofit_prm.xmax)
self.xrange.setVisible(self.show_xrange)
if self.data_curve is None:
self.data_curve = make.curve([], [],
_("Data"), color="b", linewidth=2)
plot.add_item(self.data_curve)
self.data_curve.set_data(self.x, self.y)
if self.fit_curve is None:
self.fit_curve = make.curve([], [],
_("Fit"), color="r", linewidth=2)
plot.add_item(self.fit_curve)
self.fit_curve.set_data(self.x, yfit)
plot.replot()
plot.disable_autoscale()
def range_changed(self, xrange_obj, xmin, xmax):
self.autofit_prm.xmin, self.autofit_prm.xmax = xmin, xmax
self.compute_imin_imax()
def toggle_xrange(self, state):
self.xrange.setVisible(state)
plot = self.get_plot()
plot.replot()
if state:
plot.set_active_item(self.xrange)
self.show_xrange = state
def edit_parameters(self):
if self.autofit_prm.edit(parent=self):
self.xrange.set_range(self.autofit_prm.xmin, self.autofit_prm.xmax)
plot = self.get_plot()
plot.replot()
self.compute_imin_imax()
def compute_imin_imax(self):
self.i_min = self.x.searchsorted(self.autofit_prm.xmin)
self.i_max = self.x.searchsorted(self.autofit_prm.xmax, side='right')
def errorfunc(self, params):
x = self.x[self.i_min:self.i_max]
y = self.y[self.i_min:self.i_max]
fitargs, fitkwargs = self.get_fitfunc_arguments()
return y - self.fitfunc(x, params, *fitargs, **fitkwargs)
def autofit(self):
meth = self.autofit_prm.method
x0 = np.array([p.value for p in self.fitparams])
if meth == "lq":
x = self.autofit_lq(x0)
elif meth=="simplex":
x = self.autofit_simplex(x0)
elif meth=="powel":
x = self.autofit_powel(x0)
elif meth=="bfgs":
x = self.autofit_bfgs(x0)
elif meth=="l_bfgs_b":
x = self.autofit_l_bfgs(x0)
elif meth=="cg":
x = self.autofit_cg(x0)
else:
return
for v, p in zip(x, self.fitparams):
p.value = v
self.refresh()
for prm in self.fitparams:
prm.update()
def get_norm_func(self):
prm = self.autofit_prm
err_norm = eval(prm.err_norm)
def func(params):
err = np.linalg.norm(self.errorfunc(params), err_norm)
return err
return func
def autofit_simplex(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin
x = fmin(self.get_norm_func(), x0, xtol=prm.xtol, ftol=prm.ftol)
return x
def autofit_powel(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin_powell
x = fmin_powell(self.get_norm_func(), x0, xtol=prm.xtol, ftol=prm.ftol)
return x
def autofit_bfgs(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin_bfgs
x = fmin_bfgs(self.get_norm_func(), x0, gtol=prm.gtol,
norm=eval(prm.norm))
return x
def autofit_l_bfgs(self, x0):
prm = self.autofit_prm
bounds = [(p.min, p.max) for p in self.fitparams]
from scipy.optimize import fmin_l_bfgs_b
x, _f, _d = fmin_l_bfgs_b(self.get_norm_func(), x0, pgtol=prm.gtol,
approx_grad=1, bounds=bounds)
return x
def autofit_cg(self, x0):
prm = self.autofit_prm
from scipy.optimize import fmin_cg
x = fmin_cg(self.get_norm_func(), x0, gtol=prm.gtol,
norm=eval(prm.norm))
return x
def autofit_lq(self, x0):
prm = self.autofit_prm
def func(params):
err = self.errorfunc(params)
return err
from scipy.optimize import leastsq
x, _ier = leastsq(func, x0, xtol=prm.xtol, ftol=prm.ftol)
return x
def get_values(self):
"""Convenience method to get fit parameter values"""
return [param.value for param in self.fitparams]
def __init__(self, parent):
QWidget.__init__(self, parent)
font = QFont(get_family(MONOSPACE), 10, QFont.Normal)
info_icon = QLabel()
icon = get_std_icon('MessageBoxInformation').pixmap(24, 24)
info_icon.setPixmap(icon)
info_icon.setFixedWidth(32)
info_icon.setAlignment(Qt.AlignTop)
self.desc_label = QLabel()
self.desc_label.setWordWrap(True)
self.desc_label.setAlignment(Qt.AlignTop)
self.desc_label.setFont(font)
group_desc = QGroupBox(_("Description"), self)
layout = QHBoxLayout()
layout.addWidget(info_icon)
layout.addWidget(self.desc_label)
group_desc.setLayout(layout)
self.editor = CodeEditor(self)
self.editor.setup_editor(linenumbers=True, font=font)
self.editor.setReadOnly(True)
group_code = QGroupBox(_("Source code"), self)
layout = QVBoxLayout()
layout.addWidget(self.editor)
group_code.setLayout(layout)
self.run_button = QPushButton(get_icon("apply.png"),
_("Run this script"), self)
self.quit_button = QPushButton(get_icon("exit.png"), _("Quit"), self)
hlayout = QHBoxLayout()
hlayout.addWidget(self.run_button)
hlayout.addStretch()
hlayout.addWidget(self.quit_button)
vlayout = QVBoxLayout()
vlayout.addWidget(group_desc)
vlayout.addWidget(group_code)
vlayout.addLayout(hlayout)
self.setLayout(vlayout)
