def test_find_uniprot_reviewed(self):
'''Checks that we're actually finding the reviewed entry (Swiss-Prot)
and not just returning one at random.'''
entriesMixed = {'TrEMBL':['fake-acc1', 'fake-acc2', 'fake-acc3'],
'Swiss-Prot':'P24941'}
selected2 = mygeneinfo.findReviewedUniprotEntry(entriesMixed, None)
assert selected2 == 'P24941'
def test_find_uniprot_without_mygeneinfo(self):
'''Check that we can pull a reviewed uniprot entry from uniprot
even if mygene.info doesn't record any. (Note: this test may fail
if entrez id 28 returns a different uniprot acc in the future.)'''
assert u'P16442' == mygeneinfo.findReviewedUniprotEntry('', '28')
def test_find_uniprot_unexpected(self):
'''Check that we return an empty unicode string if we're passed
an unexpected input'''
entries = ['foo','bar']
assert u'' == mygeneinfo.findReviewedUniprotEntry(entries, None)
def test_find_uniprot_missing(self):
'''Check that we return an empty unicode string if we are passed
an empty string'''
entries = ''
assert u'' == mygeneinfo.findReviewedUniprotEntry(entries, None)
def test_find_uniprot_noreviewed(self):
'''Check that we can return something even if nothing is reviewed'''
entriesUnreviewed = {'TrEMBL':'E7ESI2'}
selected3 = mygeneinfo.findReviewedUniprotEntry(entriesUnreviewed, None)
assert selected3 == 'E7ESI2'
def test_find_uniprot_basic(self):
'''Make sure we find the reviewed entry of the group.'''
entries = {'Swiss-Prot':'P24941', 'TrEMBL':'E7ESI2'}
selected = mygeneinfo.findReviewedUniprotEntry(entries, None)
assert selected == 'P24941'