def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.experiment_time = self.param['experiment_time']
self.time_start = time.time()
# Set up Phidget channels
self.aout_channel_yaw = 0
self.aout_channel_x = 1
self.aout_channel_yaw_gain = 2
self.aout_channel_y = 3
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# Setup analog output YAW
self.aout_yaw = VoltageOutput()
self.aout_yaw.setChannel(self.aout_channel_yaw)
self.aout_yaw.openWaitForAttachment(5000)
self.aout_yaw.setVoltage(0.0)
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output YAW gain
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(0.0)
self.print = True
# Set up socket info
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
self.PORT = 65432 # The (receiving) host port (sock_port)
self.done = False
self.gain_yaw = 1
self.heading_with_gain = 0
self.jump = True
self.time_between_jumps = 90
self.jump_size = 0
#set up logger to save hd5f file
self.logger = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.stim_speed = self.param['stim_speed']
self.turn_type = self.param['turn_type']
self.bar_offset = self.param[
'bar_offset'] # bar relative to wind [deg]
self.experiment_time = self.param['experiment_time']
self.time_start = time.time(
) # get the current time and use it as a ref for elapsed time
self.stim_dir = 0
self.offset_adjust = 15 # use this offset to make bars perfectly aligned to wind, hard coded (deg)
self.fly_heading = 0 # for calculating heading of the fly (rad)
self.first_time_in_loop = True
self.print = True # for printing the current values on the console
# specify the time epochs in the experiment
self.time_baseline = 10 # [s] baseline period
self.epoch_dur = 200 # [s] duration of an individual epoch
self.epoch_num = 6 # total number of epochs
# set voltage range for Phidget
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# set up two Phidgets
self.phidget_vision = 525577 # for writing Fictrac x, y, and panels (yaw_gain)
self.phidget_wind = 589946 # for sending the position of the motor to NI-DAQ, actual animal yaw
# Set up Phidget channels in device 1 for vision (0-index)
self.aout_channel_ydimension = 0
self.aout_channel_x = 1
self.aout_channel_y = 3
self.aout_channel_yaw_gain = 2
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setDeviceSerialNumber(self.phidget_vision)
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setDeviceSerialNumber(self.phidget_vision)
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(0.0)
# Setup analog output YAW (use this channel to turn panels on and off)
self.aout_ydim = VoltageOutput()
self.aout_ydim.setDeviceSerialNumber(self.phidget_vision)
self.aout_ydim.setChannel(self.aout_channel_ydimension)
self.aout_ydim.openWaitForAttachment(5000)
self.aout_ydim.setVoltage(0.0)
# Setup analog output YAW gain (use this channel to control panel bar position)
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Set up Phidget channels in device 2 for wind (0-index)
self.aout_channel_motor = 0
self.aout_channel_yaw = 1 # for recording the actual yaw of the fly
self.aout_channel_wind_valve = 2
# Setup analog output motor
self.aout_motor = VoltageOutput()
self.aout_motor.setDeviceSerialNumber(self.phidget_wind)
self.aout_motor.setChannel(self.aout_channel_motor)
self.aout_motor.openWaitForAttachment(5000)
self.aout_motor.setVoltage(0.0)
# Setup analog output for yaw
self.aout_yaw = VoltageOutput()
self.aout_yaw.setDeviceSerialNumber(self.phidget_wind)
self.aout_yaw.setChannel(self.aout_channel_yaw)
self.aout_yaw.openWaitForAttachment(5000)
self.aout_yaw.setVoltage(0.0)
# Setup analog output wind valve
self.aout_wind_valve = VoltageOutput()
self.aout_wind_valve.setDeviceSerialNumber(self.phidget_wind)
self.aout_wind_valve.setChannel(self.aout_channel_wind_valve)
self.aout_wind_valve.openWaitForAttachment(5000)
self.aout_wind_valve.setVoltage(0.0)
# Set up socket info for connecting with the FicTrac
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
self.PORT = 65432 # The (receiving) host port (sock_port)
# Set up Arduino connection
self.COM = 'COM4' # serial port
self.baudrate = 115200 # 9600
self.serialTimeout = 0.001 # blocking timeout for readline()
# flag for indicating when the trial is done
self.done = False
#set up logger to save hd5f file
self.logger_fictrac = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#set up logger to save hd5f file
self.logger_arduino = H5Logger(
filename=(self.param['logfile_name']).replace(
'.hdf5', '_arduino.hdf5'),
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.experiment_time = self.param['experiment_time']
self.time_start = time.time()
# Set up Phidget channels
self.aout_channel_ydimension = 0 #I'm setting up a channel such that I can change the y dimension of the panels sending a signal through here
self.aout_channel_x = 1
self.aout_channel_yaw_gain = 2
self.aout_channel_y = 3
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# Set up Phidget serial numbers for using two devices
self.phidget_vision = 525577 # written on the back of the Phidget
self.phidget_wind = 589946 # for sending the position of the motor to NI-DAQ
# Setup analog output YAW
self.aout_ydim = VoltageOutput()
self.aout_ydim.setDeviceSerialNumber(self.phidget_vision)
self.aout_ydim.setChannel(self.aout_channel_ydimension)
self.aout_ydim.openWaitForAttachment(5000)
self.aout_ydim.setVoltage(0.0)
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setDeviceSerialNumber(self.phidget_vision)
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output YAW gain
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setDeviceSerialNumber(self.phidget_vision)
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(9.0)
# Set up Phidget channels in device 2 for wind
self.aout_channel_motor = 0
self.aout_channel_wind_valve = 2
# Setup analog output motor
self.aout_motor = VoltageOutput()
self.aout_motor.setDeviceSerialNumber(self.phidget_wind)
self.aout_motor.setChannel(self.aout_channel_motor)
self.aout_motor.openWaitForAttachment(5000)
self.aout_motor.setVoltage(0.0)
# Setup analog output wind valve
self.aout_wind_valve = VoltageOutput()
self.aout_wind_valve.setDeviceSerialNumber(self.phidget_wind)
self.aout_wind_valve.setChannel(self.aout_channel_wind_valve)
self.aout_wind_valve.openWaitForAttachment(5000)
self.aout_wind_valve.setVoltage(0.0)
self.print = True
# Set up socket info
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
self.PORT = 65432 # The (receiving) host port (sock_port)
# Set up Arduino connection
self.COM = 'COM4' # serial port
self.baudrate = 115200 # 9600
self.serialTimeout = 0.001 # blocking timeout for readline()
self.done = False
self.gain_yaw = 1
self.heading_with_gain = 0
self.bar_jump = True
self.bar_jump_size = 0
self.wind_jump = True
self.wind_jump_size = 0
#initialize the bar on and the wind off
self.bar = False
self.wind = True
#initialize heading with respect to panels to be starting position
self.motor_command = 0
self.bar_position = np.deg2rad(360 - self.param['offset'])
#set up logger to save hd5f file
self.logger_fictrac = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#set up logger to save hd5f file
self.logger_arduino = H5Logger(
filename=(self.param['logfile_name']).replace(
'.hdf5', '_arduino.hdf5'),
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#specify a variable for the first message being read
self.first_time_in_loop = True
def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.experiment_time = self.param['experiment_time']
self.time_start = time.time(
) # get the current time and use it as a ref for elapsed time
#get gain for the panels and wind
self.gain_panels = self.param['gain_panels']
self.gain_wind = self.param['gain_wind']
# Set up Phidget serial numbers for using two devices
self.phidget_vision = 525577 # written on the back of the Phidget
self.phidget_wind = 589946 # for sending the position of the motor to NI-DAQ
# Set up Phidget channels in device 1 for vision (0-index)
self.aout_channel_yaw = 0
self.aout_channel_x = 1
self.aout_channel_yaw_gain = 2
self.aout_channel_y = 3
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# Setup analog output YAW
self.aout_yaw = VoltageOutput()
self.aout_yaw.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw.setChannel(self.aout_channel_yaw)
self.aout_yaw.openWaitForAttachment(5000)
self.aout_yaw.setVoltage(0.0)
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setDeviceSerialNumber(self.phidget_vision)
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output YAW gain
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setDeviceSerialNumber(self.phidget_vision)
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(0.0)
# Set up Phidget channels in device 2 for wind (0-index)
self.aout_channel_motor = 0
self.aout_channel_wind_valve = 2
# Setup analog output motor
self.aout_motor = VoltageOutput()
self.aout_motor.setDeviceSerialNumber(self.phidget_wind)
self.aout_motor.setChannel(self.aout_channel_motor)
self.aout_motor.openWaitForAttachment(5000)
self.aout_motor.setVoltage(0.0)
# Setup analog output wind valve
self.aout_wind_valve = VoltageOutput()
self.aout_wind_valve.setDeviceSerialNumber(self.phidget_wind)
self.aout_wind_valve.setChannel(self.aout_channel_wind_valve)
self.aout_wind_valve.openWaitForAttachment(5000)
self.aout_wind_valve.setVoltage(0.0)
self.print = True
# Set up socket info for connecting with the FicTrac
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
self.PORT = 65432 # The (receiving) host port (sock_port)
# Set up Arduino connection
self.COM = 'COM4' # serial port
self.baudrate = 115200 # 9600
self.serialTimeout = 0.001 # blocking timeout for readline()
# flag for indicating when the trial is done
self.done = False
#initialize heading with respect to panels to be starting position
self.motor_command = 0
self.bar_position = np.deg2rad(360 - self.param['offset'])
self.jump = True
self.time_between_jumps = 90 # [s]
self.jump_mag = 90 # [deg] jump magnitude
self.jump_size = 0 # default value is zero
#set up logger to save hd5f file
self.logger_fictrac = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#set up logger to save hd5f file
self.logger_arduino = H5Logger(
filename=(self.param['logfile_name']).replace(
'.hdf5', '_arduino.hdf5'),
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#specify a variable for the first message being read
self.first_time_in_loop = True
def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.stim_speed = self.param['stim_speed']
self.turn_type = self.param['turn_type']
self.experiment_time = self.param['experiment_time']
self.time_start = time.time(
) # get the current time and use it as a ref for elapsed time
self.current_wind_dir = 0
# Set up Phidget serial numbers for using two devices
self.phidget_vision = 525577 # written on the back of the Phidget
self.phidget_wind = 589946 # for sending the position of the motor to NI-DAQ
# Set up Phidget channels in device 1 for vision (0-index)
self.aout_channel_yaw = 0
self.aout_channel_x = 1
self.aout_channel_yaw_gain = 2
self.aout_channel_y = 3
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# Setup analog output YAW
self.aout_yaw = VoltageOutput()
self.aout_yaw.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw.setChannel(self.aout_channel_yaw)
self.aout_yaw.openWaitForAttachment(5000)
self.aout_yaw.setVoltage(0.0)
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setDeviceSerialNumber(self.phidget_vision)
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output YAW gain
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setDeviceSerialNumber(self.phidget_vision)
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(0.0)
# Set up Phidget channels in device 2 for wind (0-index)
self.aout_channel_motor = 0
self.aout_channel_wind_valve = 2
# Setup analog output motor
self.aout_motor = VoltageOutput()
self.aout_motor.setDeviceSerialNumber(self.phidget_wind)
self.aout_motor.setChannel(self.aout_channel_motor)
self.aout_motor.openWaitForAttachment(5000)
self.aout_motor.setVoltage(0.0)
# Setup analog output wind valve
self.aout_wind_valve = VoltageOutput()
self.aout_wind_valve.setDeviceSerialNumber(self.phidget_wind)
self.aout_wind_valve.setChannel(self.aout_channel_wind_valve)
self.aout_wind_valve.openWaitForAttachment(5000)
self.aout_wind_valve.setVoltage(0.0)
self.print = True
# Set up socket info for connecting with the FicTrac
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
self.PORT = 65432 # The (receiving) host port (sock_port)
# Set up Arduino connection
self.COM = 'COM4' # serial port
self.baudrate = 115200 # 9600
self.serialTimeout = 0.001 # blocking timeout for readline()
# flag for indicating when the trial is done
self.done = False
#set up logger to save hd5f file
self.logger_fictrac = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#set up logger to save hd5f file
self.logger_arduino = H5Logger(
filename=(self.param['logfile_name']).replace(
'.hdf5', '_arduino.hdf5'),
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.experiment_time = self.param['experiment_time']
self.time_start = time.time()
# Set up Phidget channels
self.aout_channel_ydimension = 0
self.aout_channel_x = 1
self.aout_channel_yaw_gain = 2
self.aout_channel_y = 3
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# Set up Phidget serial numbers for using two devices
self.phidget_vision = 525577 # written on the back of the Phidget
self.phidget_heading = 589946
# Setup analog output y dim, to change the y dimension of the stimulus
self.aout_ydim = VoltageOutput()
self.aout_ydim.setDeviceSerialNumber(self.phidget_vision)
self.aout_ydim.setChannel(self.aout_channel_ydimension)
self.aout_ydim.openWaitForAttachment(5000)
self.aout_ydim.setVoltage(0.0)
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setDeviceSerialNumber(self.phidget_vision)
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output YAW gain
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setDeviceSerialNumber(self.phidget_vision)
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(9.0)
# Set up Phidget channels in device 2 to save the heading
self.aout_heading_channel = 1
# Setup analog output motor
self.aout_heading = VoltageOutput()
self.aout_heading.setDeviceSerialNumber(self.phidget_heading)
self.aout_heading.setChannel(self.aout_heading_channel)
self.aout_heading.openWaitForAttachment(5000)
self.aout_heading.setVoltage(0.0)
self.print = True
# Set up socket info
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
self.PORT = 65432 # The (receiving) host port (sock_port)
# Set up Arduino connection
self.COM = 'COM4' # serial port
self.baudrate = 115200 # 9600
self.serialTimeout = 0.001 # blocking timeout for readline()
self.done = False
self.gain_yaw = 1
self.heading_with_gain = 0
self.bar_jump = True
self.bar_jump_size = 0
#initialize the bar on
self.bar = True
self.bar_moving = True
#define times when bar will be turned off
self.turn_off_times = np.linspace(900, 3525, 26)
#self.turn_off_times = np.linspace(30,300,7) #uncomment for testing
#initialize heading with respect to panels to be starting position
self.bar_position = np.deg2rad(360 - self.param['offset'])
#set up logger to save hd5f file
self.logger_fictrac = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#specify a variable for the first message being read
self.first_time_in_loop = True
def __init__(self, param=DefaultParam):
self.param = param
self.experiment = self.param['experiment']
self.experiment_time = self.param['experiment_time']
self.time_start = time.time()
# Set up Phidget channels
self.aout_channel_yaw = 0
self.aout_channel_x = 1
self.aout_channel_yaw_gain = 2
self.aout_channel_y = 3
self.aout_max_volt = 10.0
self.aout_min_volt = 0.0
# Set up Phidget serial numbers for using two devices
self.phidget_vision = 525577 # written on the back of the Phidget
self.phidget_wind = 589946 # for sending the position of the motor to NI-DAQ
# Setup analog output YAW
self.aout_yaw = VoltageOutput()
self.aout_yaw.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw.setChannel(self.aout_channel_yaw)
self.aout_yaw.openWaitForAttachment(5000)
self.aout_yaw.setVoltage(0.0)
# Setup analog output X
self.aout_x = VoltageOutput()
self.aout_x.setDeviceSerialNumber(self.phidget_vision)
self.aout_x.setChannel(self.aout_channel_x)
self.aout_x.openWaitForAttachment(5000)
self.aout_x.setVoltage(0.0)
# Setup analog output YAW gain
self.aout_yaw_gain = VoltageOutput()
self.aout_yaw_gain.setDeviceSerialNumber(self.phidget_vision)
self.aout_yaw_gain.setChannel(self.aout_channel_yaw_gain)
self.aout_yaw_gain.openWaitForAttachment(5000)
self.aout_yaw_gain.setVoltage(0.0)
# Setup analog output Y
self.aout_y = VoltageOutput()
self.aout_y.setDeviceSerialNumber(self.phidget_vision)
self.aout_y.setChannel(self.aout_channel_y)
self.aout_y.openWaitForAttachment(5000)
self.aout_y.setVoltage(0.0)
self.print = True
# Set up socket info
self.HOST = '127.0.0.1' # The (receiving) host IP address (sock_host)
#self.HOST = '10.119.97.141'
self.PORT = 65432 # The (receiving) host port (sock_port)
self.done = False
# Set initial bar position
self.bar_position = np.deg2rad(
360 - self.param['offset']) # right to the fly is +90 deg
#set up logger to save hd5f file
self.logger = H5Logger(
filename=self.param['logfile_name'],
auto_incr=self.param['logfile_auto_incr'],
auto_incr_format=self.param['logfile_auto_incr_format'],
param_attr=self.param)
#specify a variable for the first message being read
self.first_time_in_loop = True