def loadImageStack(self, fileName, wvlStart=None, wvlStop=None,
weighted=True, fluxWeighted=False,
getRawCount=False, scaleByEffInt=True,
deadTime=100.e-6, filterName=None):
#print '\nMaking images:'
#print str(wvlStart),'-',wvlStop,'A'
#print 'weighted:',weighted
#print 'fluxWeighted:',fluxWeighted
#print 'getRawCount:',getRawCount
#print 'scaleByEffInt:',scaleByEffInt
print "N timeStamps = ", len(self.timeStamps)
#If the file exists, read it out
if os.path.isfile(fileName):
return readImageStack(fileName)
#if the file doesn't exists, make it
else:
images = []
pixIntTimes = []
startTimes = []
endTimes = []
intTimes = []
for iFrame in range(len(self.frameIntervals)):
print '\nStacking Frame:',iFrame, "of", len(self.frameIntervals),"..."
im_dict = self.getPixelCountImageByFrame(iFrame,
wvlStart, wvlStop,
weighted,
fluxWeighted,
getRawCount,
scaleByEffInt,
deadTime, filterName)
if im_dict is not None:
images.append(im_dict['image'])
pixIntTimes.append(im_dict['pixIntTime'])
startTimes.append(im_dict['startTime'])
endTimes.append(im_dict['endTime'])
intTimes.append(im_dict['intTime'])
#pop=PopUp(parent=None,title='JD: '+str(im_dict['startTime'])+' Image')
#pop.plotArray(image=im_dict['image'], title='Image')
#pop.show()
#plotArray(image=im_dict['image'], title='JD: '+str(im_dict['startTime'])+' Image')
#print '\n'
writeImageStack(fileName, images, startTimes=startTimes,
endTimes=endTimes, intTimes=intTimes,
pixIntTimes=pixIntTimes, targetName=self.name,
run=self.run,
nFrames=len(images),
wvlLowerLimit=wvlStart,
wvlUpperLimit=wvlStop, weighted=weighted,
fluxWeighted=fluxWeighted,
hotPixelsApplied=self.hotPixelsApplied,
maxExposureTime=self.dt,
tStamps=self.timeStamps)
#return {'images':images,'pixIntTimes':pixIntTimes,
#'startTimes':startTimes,'endTimes':endTimes,'intTimes':intTimes}
print "Saved %i frames out of %i (the rest were blank intervals)"%(len(images), len(self.frameIntervals))
return readImageStack(fileName)
def loadImageStack(self, fileName, wvlStart=None, wvlStop=None,
weighted=True, fluxWeighted=False,
getRawCount=False, scaleByEffInt=True,
deadTime=100.e-6):
# If the file exists, read it out
if os.path.isfile(fileName):
return readImageStack(fileName)
# if the file doesn't exists, make it
else:
images = []
pixIntTimes = []
startTimes = []
endTimes = []
intTimes = []
for iFrame in range(len(self.frameIntervals)):
im_dict = self.getPixelCountImageByFrame(iFrame,
wvlStart, wvlStop,
weighted,
fluxWeighted,
getRawCount,
scaleByEffInt,
deadTime)
images.append(im_dict['image'])
pixIntTimes.append(im_dict['pixIntTime'])
startTimes.append(im_dict['startTime'])
endTimes.append(im_dict['endTime'])
intTimes.append(im_dict['intTime'])
writeImageStack(fileName, images, startTimes=startTimes,
endTimes=endTimes, intTimes=intTimes,
pixIntTimes=pixIntTimes, targetName=self.name,
run=self.run,
nFrames=len(self.frameIntervals),
wvlLowerLimit=wvlStart,
wvlUpperLimit=wvlStop, weighted=weighted,
fluxWeighted=fluxWeighted,
hotPixelsApplied=self.hotPixelsApplied,
maxExposureTime=self.dt,
tStamps=self.timeStamps)
# return {'images':images,'pixIntTimes':pixIntTimes,
# 'startTimes':startTimes,'endTimes':endTimes,'intTimes':intTimes}
return readImageStack(fileName)