def test_fhir_client_patient_list_auth_fail() -> None:
test_name = "test_fhir_client_patient_list_auth_fail"
mock_server_url = "http://mock-server:1080"
mock_client: MockServerFriendlyClient = MockServerFriendlyClient(
base_url=mock_server_url)
relative_url: str = test_name
absolute_url: str = mock_server_url + "/" + test_name
mock_client.clear(f"/{test_name}/*.*")
mock_client.reset()
mock_client.expect(
mock_request(path=f"/{relative_url}/Patient", method="GET"),
mock_response(code=403),
timing=times(1),
)
fhir_client = FhirClient()
fhir_client = fhir_client.url(absolute_url).resource("Patient")
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert response.error == "403"
def test_fhir_client_patient_list() -> None:
test_name = "test_fhir_client_patient_list"
mock_server_url = "http://mock-server:1080"
mock_client: MockServerFriendlyClient = MockServerFriendlyClient(
base_url=mock_server_url)
relative_url: str = test_name
absolute_url: str = mock_server_url + "/" + test_name
mock_client.clear(f"/{test_name}/*.*")
mock_client.reset()
response_text: str = json.dumps({"resourceType": "Patient", "id": "12355"})
mock_client.expect(
mock_request(path=f"/{relative_url}/Patient", method="GET"),
mock_response(body=response_text),
timing=times(1),
)
fhir_client = FhirClient()
fhir_client = fhir_client.url(absolute_url).resource("Patient")
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert response.responses == response_text
def test_dev_server_get_patients() -> None:
clean_fhir_server()
url = "http://fhir:3000/4_0_0"
fhir_client = FhirClient()
fhir_client = fhir_client.url(url).resource("Patient")
resource = {
"resourceType": "Patient",
"id": "12355",
"meta": {
"security": [{
"system": "https://www.icanbwell.com/access",
"code": "bwell"
}]
},
}
merge_response: FhirMergeResponse = fhir_client.merge(
[json.dumps(resource)])
print(merge_response.responses)
assert merge_response.status == 200, merge_response.responses
assert merge_response.responses[0][
"created"] is True, merge_response.responses
fhir_client = fhir_client.url(url).resource("Patient")
response: FhirGetResponse = fhir_client.get()
print(response.responses)
responses_ = json.loads(response.responses)[0]
assert responses_["id"] == resource["id"]
assert responses_["resourceType"] == resource["resourceType"]
def test_dev_server_auth() -> None:
url = "https://fhir-auth.dev.bwell.zone/4_0_0"
fhir_client = FhirClient()
fhir_client = fhir_client.url(url).resource("Patient")
fhir_client = fhir_client.client_credentials(
client_id="4opocimdhppokn1ks0hpbo9fkv", client_secret="{Put secret here}"
).auth_scopes(["user/*.read"])
response: FhirGetResponse = fhir_client.get()
print(response.responses)
def test_fhir_client_patient_by_id() -> None:
with requests_mock.Mocker() as mock:
url = "http://foo"
response_text = {"resourceType": "Patient", "id": "12355"}
mock.get(f"{url}/Patient/12355", json=response_text)
fhir_client = FhirClient()
fhir_client = fhir_client.url(url).resource("Patient").id_("12355")
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert response.responses == json.dumps(response_text)
def test_fhir_client_patient_list_auth_fail() -> None:
with requests_mock.Mocker() as mock:
url = "http://foo"
mock.get(f"{url}/Patient", status_code=403)
fhir_client = FhirClient()
fhir_client = fhir_client.url(url).resource("Patient")
with pytest.raises(AssertionError):
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert response.error == "403"
def test_fhir_client_patient_list_auth_fail_retry() -> None:
test_name = "test_fhir_client_patient_list_auth_fail_retry"
mock_server_url = "http://mock-server:1080"
mock_client: MockServerFriendlyClient = MockServerFriendlyClient(
base_url=mock_server_url
)
relative_url: str = test_name
absolute_url: str = mock_server_url + "/" + test_name
mock_client.clear(f"/{test_name}/*.*")
mock_client.reset()
mock_client.expect(
mock_request(path=f"/{relative_url}/Patient", method="GET"),
mock_response(code=401),
timing=times(1),
)
auth_response_text = {
"access_token": "my_access_token",
"expires_in": 86400,
"token_type": "Bearer",
}
mock_client.expect(
mock_request(path=f"/{relative_url}/auth", method="POST"),
mock_response(code=200, body=auth_response_text),
timing=times(1),
)
response_text: str = json.dumps({"resourceType": "Patient", "id": "12355"})
mock_client.expect(
mock_request(path=f"/{relative_url}/Patient", method="GET"),
mock_response(body=response_text),
timing=times(1),
)
fhir_client = FhirClient()
fhir_client = fhir_client.url(absolute_url).resource("Patient")
fhir_client = fhir_client.client_credentials(
client_id="client_id", client_secret="client_secret"
)
fhir_client = fhir_client.auth_server_url(absolute_url + "/" + "auth").auth_scopes(
["user/*.ready"]
)
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert response.responses == response_text
def test_fhir_client_patient_list_auth_fail_retry() -> None:
with requests_mock.Mocker() as mock:
url = "http://foo"
response_text = {"resourceType": "Patient", "id": "12355"}
mock.get(f"{url}/Patient", [{
"status_code": 403
}, {
"json": response_text
}])
auth_response = {
"access_token": "my_access_token",
"expires_in": 86400,
"token_type": "Bearer",
}
mock.post(
"http://auth",
[{
"status_code": 200
}, {
"json": auth_response,
"status_code": 200
}],
)
fhir_client = FhirClient()
fhir_client = fhir_client.url(url).resource("Patient")
fhir_client = fhir_client.client_credentials(
client_id="client_id", client_secret="client_secret")
fhir_client = fhir_client.auth_server_url("http://auth").auth_scopes(
["user/*.ready"])
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert mock.call_count == 4, ",".join(
[r.url for r in mock.request_history])
assert response.responses == json.dumps(response_text)
def test_dev_server_no_auth() -> None:
url = "http://fhir:3000/4_0_0"
fhir_client = FhirClient()
fhir_client = fhir_client.url(url).resource("Patient")
response: FhirGetResponse = fhir_client.get()
print(response.responses)
def test_fhir_client_bundle() -> None:
with requests_mock.Mocker() as mock:
url = "http://foo"
response_text = {
"resourceType":
"Bundle",
"id":
"1437321965",
"entry": [
{
"link":
"https://localhost:3000/4_0_0/Practitioner/1437321965",
"resource": {
"resourceType":
"Practitioner",
"id":
"1437321965",
"meta": {
"versionId": "1",
"lastUpdated": "2021-01-13T04:37:06+00:00",
"source": "http://medstarhealth.org/provider",
},
"identifier": [
{
"use": "usual",
"type": {
"coding": [{
"system":
"http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "PRN",
}]
},
"system": "http://medstarhealth.org",
"value": "500524",
},
{
"use": "official",
"type": {
"coding": [{
"system":
"http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "NPI",
}]
},
"system": "http://hl7.org/fhir/sid/us-npi",
"value": "1437321965",
},
],
"active":
True,
"name": [{
"use": "usual",
"text": "ZOOVIA AMAN MD",
"family": "AMAN",
"given": ["ZOOVIA", ""],
}],
"gender":
"female",
"qualification": [
{
"code": {
"coding": [{
"system":
"http://terminology.hl7.org/ValueSet/v2-2.7-030",
"code": "MD",
}]
}
},
{
"code": {
"coding": [{
"system":
"http://terminology.hl7.org/ValueSet/v2-2.7-030",
"code": "MD",
}]
},
"period": {
"start": "2011-01-01",
"end": "2023-12-31"
},
"issuer": {
"reference":
"Organization/Harpers_Ferry_Family_Medicine"
},
},
],
"communication": [{
"coding": [{
"system": "urn:ietf:bcp:47",
"code": "en"
}]
}],
},
},
{
"link":
"https://localhost:3000/4_0_0/PractitionerRole/1437321965-ML1-MLSW",
"resource": {
"resourceType":
"PractitionerRole",
"id":
"1437321965-ML1-MLSW",
"meta": {
"versionId": "1",
"lastUpdated": "2021-01-13T04:37:24+00:00",
"source": "http://medstarhealth.org/provider",
},
"practitioner": {
"reference": "Practitioner/1437321965"
},
"organization": {
"reference": "Organization/Medstar-15888213"
},
"code": [{
"coding": [{
"system":
"http://terminology.hl7.org/CodeSystem/practitioner-role",
"code": "doctor",
"display": "Doctor",
}],
"text":
"Doctor",
}],
"specialty": [
{
"coding": [{
"system":
"https://www.http://medstarhealth.org",
"code": "Family Medicine",
"display": "Family Medicine",
}],
"text":
"Family Medicine",
},
{
"coding": [{
"system":
"http://nucc.org/provider-taxonomy",
"code": "207Q00000X",
"display": "Family Medicine",
}],
"text":
"Family Medicine",
},
{
"coding": [{
"system":
"http://nucc.org/provider-taxonomy",
"code": "261QP2300X",
"display": "Primary Care",
}],
"text":
"Primary Care",
},
],
"location": [{
"reference":
"Location/Medstar-Alias-ML1-MLSW"
}],
},
},
],
}
expected_response = {
"practitioner": [{
"resourceType":
"Practitioner",
"id":
"1437321965",
"meta": {
"versionId": "1",
"lastUpdated": "2021-01-13T04:37:06+00:00",
"source": "http://medstarhealth.org/provider",
},
"identifier": [
{
"use": "usual",
"type": {
"coding": [{
"system":
"http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "PRN",
}]
},
"system": "http://medstarhealth.org",
"value": "500524",
},
{
"use": "official",
"type": {
"coding": [{
"system":
"http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "NPI",
}]
},
"system": "http://hl7.org/fhir/sid/us-npi",
"value": "1437321965",
},
],
"active":
True,
"name": [{
"use": "usual",
"text": "ZOOVIA AMAN MD",
"family": "AMAN",
"given": ["ZOOVIA", ""],
}],
"gender":
"female",
"qualification": [
{
"code": {
"coding": [{
"system":
"http://terminology.hl7.org/ValueSet/v2-2.7-030",
"code": "MD",
}]
}
},
{
"code": {
"coding": [{
"system":
"http://terminology.hl7.org/ValueSet/v2-2.7-030",
"code": "MD",
}]
},
"period": {
"start": "2011-01-01",
"end": "2023-12-31"
},
"issuer": {
"reference":
"Organization/Harpers_Ferry_Family_Medicine"
},
},
],
"communication": [{
"coding": [{
"system": "urn:ietf:bcp:47",
"code": "en"
}]
}],
}],
"practitionerrole": [{
"resourceType":
"PractitionerRole",
"id":
"1437321965-ML1-MLSW",
"meta": {
"versionId": "1",
"lastUpdated": "2021-01-13T04:37:24+00:00",
"source": "http://medstarhealth.org/provider",
},
"practitioner": {
"reference": "Practitioner/1437321965"
},
"organization": {
"reference": "Organization/Medstar-15888213"
},
"code": [{
"coding": [{
"system":
"http://terminology.hl7.org/CodeSystem/practitioner-role",
"code": "doctor",
"display": "Doctor",
}],
"text":
"Doctor",
}],
"specialty": [
{
"coding": [{
"system": "https://www.http://medstarhealth.org",
"code": "Family Medicine",
"display": "Family Medicine",
}],
"text":
"Family Medicine",
},
{
"coding": [{
"system": "http://nucc.org/provider-taxonomy",
"code": "207Q00000X",
"display": "Family Medicine",
}],
"text":
"Family Medicine",
},
{
"coding": [{
"system": "http://nucc.org/provider-taxonomy",
"code": "261QP2300X",
"display": "Primary Care",
}],
"text":
"Primary Care",
},
],
"location": [{
"reference": "Location/Medstar-Alias-ML1-MLSW"
}],
}],
}
mock.get(f"{url}/Patient", json=response_text)
fhir_client = FhirClient().separate_bundle_resources(True)
fhir_client = fhir_client.url(url).resource("Patient")
response: FhirGetResponse = fhir_client.get()
print(response.responses)
assert response.responses == json.dumps(expected_response)