def main():
cars = pd.read_hdf('data/processed/datasets.hdf', 'cars')
carsX = cars.drop('Class', 1).copy().values
carsY = cars['Class'].copy().values
madelon = pd.read_hdf('data/processed/datasets.hdf', 'madelon')
madelonX = madelon.drop('Class', 1).copy().values
madelonY = madelon['Class'].copy().values
cars_trgX, cars_tstX, cars_trgY, cars_tstY = ms.train_test_split(
carsX, carsY, test_size=0.3, random_state=0, stratify=carsY)
madelon_trgX, madelon_tstX, madelon_trgY, madelon_tstY = ms.train_test_split(
madelonX, madelonY, test_size=0.3, random_state=0, stratify=madelonY)
d = carsX.shape[1]
hiddens_cars = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
alphas = [10**-x for x in np.arange(1, 9.01, 1 / 2)]
d = madelonX.shape[1]
hiddens_madelon = [(h, ) * l for l in [1, 2, 3]
for h in [d, d // 2, d * 2]]
pipeM = Pipeline([
('Scale', StandardScaler()),
('Cull1', SelectFromModel(RandomForestClassifier(),
threshold='median')),
('Cull2', SelectFromModel(RandomForestClassifier(),
threshold='median')),
('Cull3', SelectFromModel(RandomForestClassifier(),
threshold='median')),
('Cull4', SelectFromModel(RandomForestClassifier(),
threshold='median')), ('KNN', knnC())
])
pipeA = Pipeline([('Scale', StandardScaler()), ('KNN', knnC())])
params_madelon = {
'KNN__metric': ['manhattan', 'euclidean', 'chebyshev'],
'KNN__n_neighbors': np.arange(1, 51, 3),
'KNN__weights': ['uniform', 'distance']
}
params_cars = {
'KNN__metric': ['manhattan', 'euclidean', 'chebyshev'],
'KNN__n_neighbors': np.arange(1, 51, 3),
'KNN__weights': ['uniform', 'distance']
}
madelon_clf = basicResults(pipeM, madelon_trgX, madelon_trgY, madelon_tstX,
madelon_tstY, params_madelon, 'KNN', 'madelon')
cars_clf = basicResults(pipeA, cars_trgX, cars_trgY, cars_tstX, cars_tstY,
params_cars, 'KNN', 'cars')
#madelon_final_params={'KNN__n_neighbors': 43, 'KNN__weights': 'uniform', 'KNN__p': 1}
#cars_final_params={'KNN__n_neighbors': 142, 'KNN__p': 1, 'KNN__weights': 'uniform'}
madelon_final_params = madelon_clf.best_params_
cars_final_params = cars_clf.best_params_
pipeM.set_params(**madelon_final_params)
makeTimingCurve(madelonX, madelonY, pipeM, 'KNN', 'madelon')
pipeA.set_params(**cars_final_params)
makeTimingCurve(carsX, carsY, pipeA, 'KNN', 'cars')
def run_dt(data, title, solved_params=None):
"""
run the decision tree algo on the data given
"""
x, y, pipeline = data
pipe = Pipeline([
*pipeline,
('DT', dtclf_pruned()),
])
print("Splitting into train/test")
x_train, x_test, y_train, y_test = train_test_split(x, y, stratify=y)
if solved_params is None:
print("Doing a GridSearch for best hyperparameters")
params = {
'DT__criterion': ['gini', 'entropy'],
'DT__alpha': ALPHAS,
'DT__class_weight': ['balanced'],
'DT__min_samples_split': [2, 3, 4, 5],
}
clf = basicResults(pipe, x_train, y_train, x_test,
y_test, params, 'DT', title)
else:
print("Using pre-solved hyperparameters")
clf = pipe.set_params(**solved_params)
# print ("Plotting learning curve")
# plot_learning_curve(clf, title + ' decision tree', x,
# y, n_jobs=4, scoring=scorer, ylim=(0, 1))
# plt.savefig('./graphs/' + title + '-dt.png')
y_pred = clf.predict(x_test)
conf = confusion_matrix(y_test, clf.predict(x_test))
conf = conf.astype('float') / conf.sum(axis=1)[:, np.newaxis]
print('Confusion matrix:')
print(conf)
np.savetxt('./output/DT_{}_confusion.csv'.format(title), conf, delimiter=',', fmt='%.2f')
def run_boost(data, dataset, dtparams={}):
x, y, pipeline = data
pipe = Pipeline([
*pipeline,
('Boost',
ensemble.AdaBoostClassifier(algorithm='SAMME',
base_estimator=dtclf_pruned(**dtparams))),
])
x_train, x_test, y_train, y_test = train_test_split(x, y, stratify=y)
params = {
'Boost__n_estimators': [2**i for i in range(8)],
'Boost__algorithm': ['SAMME', 'SAMME.R'],
}
clf = basicResults(pipe, x_train, y_train, x_test, y_test, params,
'boosted', dataset)
# plot_learning_curve(clf, dataset + ' boosted', x, y,
# ylim=(0.0, 1.01), cv=5, n_jobs=4, scoring=scorer)
# plt.savefig('./graphs/' + dataset + '-boost.png')
# plot_timing_curve(clf, x, y, 'boost', dataset)
# plt.savefig('./graphs/' + dataset + '-boost-timing.png')
# plot_iteration_curve(clf, x_train, y_train, x_test, y_test, params, 'boosted', dataset)
# plt.savefig('./graphs/' + dataset + '-boost-iteration.png')
conf = confusion_matrix(y_test, clf.predict(x_test))
conf = conf.astype('float') / conf.sum(axis=1)[:, np.newaxis]
print('Confusion matrix:')
print(conf)
np.savetxt('./output/Boosted_{}_confusion.csv'.format(dataset),
conf,
delimiter=',',
fmt='%.2f')
def run_knn(data, dataset):
x, y, pipeline = data
pipe = Pipeline([
*pipeline,
('KNN', neighbors.KNeighborsClassifier()),
])
print('Splitting data ' + dataset)
x_train, x_test, y_train, y_test = train_test_split(x, y, stratify=y)
print('Calculating hyperparameters ' + dataset)
clf = basicResults(pipe, x_train, y_train, x_test, y_test, params, 'KNN',
dataset)
conf = confusion_matrix(y_test, clf.predict(x_test))
conf = conf.astype('float') / conf.sum(axis=1)[:, np.newaxis]
print('Confusion matrix:')
print(conf)
np.savetxt('./output/KNN_{}_confusion.csv'.format(dataset),
conf,
delimiter=',',
fmt='%.2f')
def run_svm_rbf(data, dataset):
x, y, pipeline = data
pipe = Pipeline([
*pipeline,
('SVM', svm.SVC(class_weight='balanced')),
])
print('Splitting data SVM RBF -- ' + dataset)
x_train, x_test, y_train, y_test = train_test_split(x, y, stratify=y)
print('Computing hyperparameters SVM RBF -- ' + dataset)
clf = basicResults(pipe, x_train, y_train, x_test,
y_test, params, 'SVM-RBF', dataset)
# plot_timing_curve(clf, x, y, 'rbf svm', dataset)
# plt.savefig('./graphs/' + dataset + '-svm-rbf-timing.png')
# plot_iteration_curve(clf, x_train, y_train, x_test,
# y_test, iter_adjust, 'rbf svm', dataset)
# plt.savefig('./graphs/' + dataset + '-svm-rbf-iteration.png')
conf = confusion_matrix(y_test, clf.predict(x_test))
conf = conf.astype('float') / conf.sum(axis=1)[:, np.newaxis]
print('Confusion matrix:')
print(conf)
np.savetxt('./output/SVM-RBF_{}_confusion.csv'.format(dataset), conf, delimiter=',', fmt='%.2f')
def run_ann(data, dataset, solved_params=None):
x, y, pipeline = data
print('Data size: ', x.shape)
pipe = Pipeline([
*pipeline,
('ANN', neural_network.MLPClassifier(max_iter=1000, early_stopping=True)),
])
print('Splitting dataset for ' + dataset)
x_train, x_test, y_train, y_test = train_test_split(x, y, stratify=y)
if solved_params is None:
print('Calculating hyperparameters for ' + dataset)
dim = x.shape[1]
params = {
'ANN__hidden_layer_sizes': [(d,) for d in [dim, dim//2]],
'ANN__solver': ['adam'],
'ANN__alpha': 10.0 ** -np.arange(1, 7),
'ANN__activation': ['relu', 'tanh', 'logistic'],
}
clf = basicResults(pipe, x_train, y_train, x_test,
y_test, params, 'ANN', dataset)
else:
print('Using presolved hyperparameters for ' + dataset)
clf = pipe.set_params(**solved_params)
# plot_learning_curve(clf, dataset + ' neural network',
# x, y, cv=5, n_jobs=4, scoring=scorer)
# plt.savefig('./graphs/' + dataset + '-ann.png')
# print('Creating timing curve for ' + dataset)
# plot_timing_curve(clf, x, y, 'neural network', dataset)
# plt.savefig('./graphs/' + dataset + '-ANN-timing.png')
# print('Creating iteration curve for ' + dataset)
# plot_iteration_curve(clf, x_train, y_train, x_test, y_test, iter_adjust, 'neural network', dataset)
# plt.savefig('./graphs/' + dataset + '-ANN-iteration.png')
conf = confusion_matrix(y_test, clf.predict(x_test))
conf = conf.astype('float') / conf.sum(axis=1)[:, np.newaxis]
print('Confusion matrix:')
print(conf)
np.savetxt('./output/ANN_{}_confusion.csv'.format(dataset), conf, delimiter=',', fmt='%.2f')
#Linear SVM
pipeS = Pipeline([('Scale', StandardScaler()),
('SVM',
SGDClassifier(loss='hinge',
l1_ratio=0,
penalty='l2',
class_weight='balanced',
random_state=55))])
params_spam = {
'SVM__alpha': alphas,
'SVM__n_iter': [int((1e6 / N_spam) / .8) + 1]
}
spam_clf = basicResults(pipeS, spam_trgX, spam_trgY, spam_tstX, spam_tstY,
params_spam, 'SVM_Lin', 'spam')
y_score = spam_clf.decision_function(spam_tstX)
fpr, tpr, thresholds = roc_curve(spam_tstY, y_score)
import matplotlib.pyplot as plt
plt.figure()
plt.plot(fpr, tpr)
plt.xlabel('FPR')
plt.ylabel('TPR')
plt.title('ROC_Curve(Spambase)')
def main():
adult = pd.read_csv('data/adult_parsed.csv')
adult_income_X = adult.drop('income', 1).copy().values
adult_income_Y = adult['income'].copy().values
# wine_data = pd.read_csv('data/winequality_white.csv')
# wine_data['category'] = wine_data['quality'] >= 7
#
# wineX = wine_data[wine_data.columns[0:11]].values
# wineY = wine_data['category'].values.astype(np.int)
adult_income_trgX, adult_income_tstX, adult_income_trgY, adult_income_tstY = ms.train_test_split(
adult_income_X,
adult_income_Y,
test_size=0.3,
random_state=0,
stratify=adult_income_Y)
# wine_trgX, wine_tstX, wine_trgY, wine_tstY = ms.train_test_split(wineX, wineY, test_size=0.3, random_state=0,stratify=wineY)
N_adult_income = adult_income_trgX.shape[0]
# N_wine = wine_trgX.shape[0]
# alphas = [10**-x for x in np.arange(1,9.01,1/2)]
#Linear SVM
pipeM = Pipeline([('Scale', StandardScaler()),
('Cull1',
SelectFromModel(RandomForestClassifier(random_state=1),
threshold='median')),
('Cull2',
SelectFromModel(RandomForestClassifier(random_state=2),
threshold='median')),
('SVM',
SGDClassifier(loss='hinge',
l1_ratio=0,
penalty='l2',
class_weight='balanced',
random_state=55))])
pipeA = Pipeline([('Scale', StandardScaler()),
('SVM',
SGDClassifier(loss='hinge',
l1_ratio=0,
penalty='l2',
class_weight='balanced',
random_state=55))])
params_adult_income = {
'SVM__alpha': [100, 10, 1, 0.1, 0.001, 0.0001],
'SVM__n_iter': np.arange(0.1, 1, 10)
}
# params_wine = {'SVM__alpha':alphas,'SVM__n_iter':[int((1e6/N_wine)/.8)+1]}
adult_income_clf = basicResults(pipeA, adult_income_trgX,
adult_income_trgY, adult_income_tstX,
adult_income_tstY, params_adult_income,
'SVM_Lin', 'adult_income')
# wine_clf = basicResults(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,params_wine,'SVM_Lin','wine')
#wine_final_params = {'SVM__alpha': 0.031622776601683791, 'SVM__n_iter': 687.25}
# wine_final_params = wine_clf.best_params_
# wine_OF_params = {'SVM__n_iter': 1303, 'SVM__alpha': 1e-16}
#adult_income_final_params ={'SVM__alpha': 0.0001, 'SVM__n_iter': 428}
adult_income_final_params = adult_income_clf.best_params_
adult_income_OF_params = {'SVM__n_iter': 55, 'SVM__alpha': 1e-16}
# pipeM.set_params(**wine_final_params)
# makeTimingCurve(wineX,wineY,pipeM,'SVM_Lin','wine')
pipeA.set_params(**adult_income_final_params)
makeTimingCurve(adult_income_X, adult_income_Y, pipeA, 'SVM_Lin',
'adult_income')
# pipeM.set_params(**wine_final_params)
# iterationLC(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,{'SVM__n_iter':[2**x for x in range(12)]},'SVM_Lin','wine')
pipeA.set_params(**adult_income_final_params)
iterationLC(pipeA, adult_income_trgX, adult_income_trgY, adult_income_tstX,
adult_income_tstY, {'SVM__n_iter': np.arange(1, 75, 3)},
'SVM_Lin', 'adult_income')
pipeA.set_params(**adult_income_OF_params)
iterationLC(pipeA, adult_income_trgX, adult_income_trgY, adult_income_tstX,
adult_income_tstY, {'SVM__n_iter': np.arange(1, 200, 5)},
'SVM_LinOF', 'adult_income')
# pipeM.set_params(**wine_OF_params)
# iterationLC(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,{'SVM__n_iter':np.arange(100,2600,100)},'SVM_LinOF','wine')
#RBF SVM
gamma_fracsA = np.arange(0.2, 2.1, 0.2)
gamma_fracsM = np.arange(0.05, 1.01, 0.1)
#
pipeM = Pipeline([('Scale', StandardScaler()),
('Cull1',
SelectFromModel(RandomForestClassifier(random_state=1),
threshold='median')),
('Cull2',
SelectFromModel(RandomForestClassifier(random_state=2),
threshold='median')),
('SVM', primalSVM_RBF())])
pipeA = Pipeline([('Scale', StandardScaler()), ('SVM', primalSVM_RBF())])
params_adult_income = {
'SVM__alpha': [100, 10, 1, 0.1, 0.001, 0.0001],
'SVM__n_iter': [int((1e6 / N_adult_income) / .8) + 1],
'SVM__gamma_frac': gamma_fracsA
}
# params_wine = {'SVM__alpha':alphas,'SVM__n_iter':[int((1e6/N_wine)/.8)+1],'SVM__gamma_frac':gamma_fracsM}
#
# wine_clf = basicResults(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,params_wine,'SVM_RBF','wine')
adult_income_clf = basicResults(pipeA, adult_income_trgX,
adult_income_trgY, adult_income_tstX,
adult_income_tstY, params_adult_income,
'SVM_RBF', 'adult_income')
# wine_final_params = wine_clf.best_params_
# wine_OF_params = wine_final_params.copy()
# wine_OF_params['SVM__alpha'] = 1e-16
adult_income_final_params = adult_income_clf.best_params_
adult_income_OF_params = adult_income_final_params.copy()
adult_income_OF_params['SVM__alpha'] = 1e-16
# pipeM.set_params(**wine_final_params)
# makeTimingCurve(wineX,wineY,pipeM,'SVM_RBF','wine')
pipeA.set_params(**adult_income_final_params)
makeTimingCurve(adult_income_X, adult_income_Y, pipeM, 'SVM_RBF',
'adult_income')
# pipeM.set_params(**wine_final_params)
# iterationLC(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,{'SVM__n_iter':[2**x for x in range(12)]},'SVM_RBF','wine')
pipeA.set_params(**adult_income_final_params)
iterationLC(pipeA, adult_income_trgX, adult_income_trgY, adult_income_tstX,
adult_income_tstY, {'SVM__n_iter': np.arange(1, 75, 3)},
'SVM_RBF', 'adult_income')
pipeA.set_params(**adult_income_OF_params)
iterationLC(pipeA, adult_income_trgX, adult_income_trgY, adult_income_tstX,
adult_income_tstY, {'SVM__n_iter': np.arange(1, 75, 3)},
'SVM_RBF_OF', 'adult_income')
def main():
adult = pd.read_csv('data/adult_parsed.csv')
adult['net_capital'] = adult['capital-gain'] - adult['capital-loss']
adult = adult.drop(["fnlwgt", "capital-gain", "capital-loss", "workclass"],
axis=1)
adult['income'] = adult['income'].map({'<=50K': 0, '>50K': 1})
adult['gender'] = adult['gender'].map({'Male': 0, 'Female': 1}).astype(int)
adult['race'] = adult['race'].map({
'Black': 0,
'Asian-Pac-Islander': 1,
'Other': 2,
'White': 3,
'Amer-Indian-Eskimo': 4
}).astype(int)
adult['marital-status'] = adult['marital-status'].map({
'Never-married':
0,
'Widowed':
1,
'Divorced':
2,
'Separated':
3,
'Married-spouse-absent':
4,
'Married-civ-spouse':
5,
'Married-AF-spouse':
6
})
adult['education'] = adult['education'].map({
'Preschool': 0,
'1st-4th': 1,
'5th-6th': 2,
'7th-8th': 3,
'9th': 4,
'10th': 5,
'11th': 6,
'12th': 7,
'Prof-school': 8,
'HS-grad': 9,
'Some-college': 10,
'Assoc-voc': 11,
'Assoc-acdm': 12,
'Bachelors': 13,
'Masters': 14,
'Doctorate': 15
})
adult['occupation'] = adult['occupation'].map({
'Priv-house-serv': 0,
'Protective-serv': 1,
'Handlers-cleaners': 2,
'Machine-op-inspct': 3,
'Adm-clerical': 4,
'Farming-fishing': 5,
'Transport-moving': 6,
'Craft-repair': 7,
'Other-service': 8,
'Tech-support': 9,
'Sales': 10,
'Exec-managerial': 11,
'Prof-specialty': 12,
'Armed-Forces': 13
})
adult['native-country'] = adult['native-country'].map({
'?':
-1,
'Puerto-Rico':
0,
'Haiti':
1,
'Cuba':
2,
'Iran':
3,
'Honduras':
4,
'Jamaica':
5,
'Vietnam':
6,
'Mexico':
7,
'Dominican-Republic':
8,
'Laos':
9,
'Ecuador':
10,
'El-Salvador':
11,
'Cambodia':
12,
'Columbia':
13,
'Guatemala':
14,
'South':
15,
'India':
16,
'Nicaragua':
17,
'Yugoslavia':
18,
'Philippines':
19,
'Thailand':
20,
'Trinadad&Tobago':
21,
'Peru':
22,
'Poland':
23,
'China':
24,
'Hungary':
25,
'Greece':
26,
'Taiwan':
27,
'Italy':
28,
'Portugal':
29,
'France':
30,
'Hong':
31,
'England':
32,
'Scotland':
33,
'Ireland':
34,
'Holand-Netherlands':
35,
'Canada':
36,
'Germany':
37,
'Japan':
38,
'Outlying-US(Guam-USVI-etc)':
39,
'United-States':
40
})
adult['relationship'] = adult['relationship'].map({
'Unmarried': 0,
'Other-relative': 1,
'Not-in-family': 2,
'Wife': 3,
'Husband': 4,
'Own-child': 5
})
adult = pd.get_dummies(adult)
adult_income_X = adult.drop('income', 1).copy().values
adult_income_Y = adult['income'].copy().values
# wine_data = pd.read_csv('data/wine-red-white-merge.csv')
# wineX = wine_data.drop('quality',1).copy().values
# wineY = wine_data['quality'].copy().values
adult_trgX, adult_tstX, adult_trgY, adult_tstY = ms.train_test_split(
adult_income_X,
adult_income_Y,
test_size=0.3,
random_state=0,
stratify=adult_income_Y)
# wine_trgX, wine_tstX, wine_trgY, wine_tstY = ms.train_test_split(wineX, wineY, test_size=0.3, random_state=0,stratify=wineY)
pipeA = Pipeline([('Scale', StandardScaler()),
('MLP',
MLPClassifier(max_iter=2000,
early_stopping=True,
random_state=55))])
pipeM = Pipeline([('Scale', StandardScaler()),
('Cull1',
SelectFromModel(RandomForestClassifier(random_state=1),
threshold='median')),
('Cull2',
SelectFromModel(RandomForestClassifier(random_state=2),
threshold='median')),
('Cull3',
SelectFromModel(RandomForestClassifier(random_state=3),
threshold='median')),
('Cull4',
SelectFromModel(RandomForestClassifier(random_state=4),
threshold='median')),
('MLP',
MLPClassifier(max_iter=2000,
early_stopping=True,
random_state=55))])
d = adult_income_X.shape[1]
hiddens_adult = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
alphas = [10**-x for x in np.arange(-1, 5.01, 1 / 2)]
alphasM = [10**-x for x in np.arange(-1, 9.01, 1 / 2)]
# d = wineX.shape[1]
hiddens_wine = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
params_adult = {
'MLP__activation': ['relu', 'logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_adult
}
# params_wine = {'MLP__activation':['relu','logistic'],'MLP__alpha':alphas,'MLP__hidden_layer_sizes':hiddens_wine}
#
# wine_clf = basicResults(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,params_wine,'ANN','wine')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX,
adult_tstY, params_adult, 'ANN', 'adult')
#wine_final_params = {'MLP__hidden_layer_sizes': (500,), 'MLP__activation': 'logistic', 'MLP__alpha': 10.0}
#adult_final_params ={'MLP__hidden_layer_sizes': (28, 28, 28), 'MLP__activation': 'logistic', 'MLP__alpha': 0.0031622776601683794}
# wine_final_params = wine_clf.best_params_
adult_final_params = adult_clf.best_params_
adult_OF_params = adult_final_params.copy()
adult_OF_params['MLP__alpha'] = 0
# wine_OF_params =wine_final_params.copy()
# wine_OF_params['MLP__alpha'] = 0
#raise
#
# pipeM.set_params(**wine_final_params)
pipeM.set_params(**{'MLP__early_stopping': False})
# makeTimingCurve(wineX,wineY,pipeM,'ANN','wine')
pipeA.set_params(**adult_final_params)
pipeA.set_params(**{'MLP__early_stopping': False})
makeTimingCurve(adult_income_X, adult_income_Y, pipeA, 'ANN', 'adult')
# pipeM.set_params(**wine_final_params)
pipeM.set_params(**{'MLP__early_stopping': False})
# iterationLC(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,{'MLP__max_iter':[2**x for x in range(12)]+[2100,2200,2300,2400,2500,2600,2700,2800,2900,3000]},'ANN','wine')
pipeA.set_params(**adult_final_params)
pipeA.set_params(**{'MLP__early_stopping': False})
iterationLC(
pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY, {
'MLP__max_iter': [2**x for x in range(12)] +
[2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000]
}, 'ANN', 'adult')
# pipeM.set_params(**wine_OF_params)
pipeM.set_params(**{'MLP__early_stopping': False})
# iterationLC(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,{'MLP__max_iter':[2**x for x in range(12)]+[2100,2200,2300,2400,2500,2600,2700,2800,2900,3000]},'ANN_OF','wine')
pipeA.set_params(**adult_OF_params)
pipeA.set_params(**{'MLP__early_stopping': False})
iterationLC(
pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY, {
'MLP__max_iter': [2**x for x in range(12)] +
[2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000]
}, 'ANN_OF', 'adult')
adult_booster = AdaBoostClassifier(algorithm='SAMME',learning_rate=1,base_estimator=adult_base,random_state=55)
OF_booster = AdaBoostClassifier(algorithm='SAMME',learning_rate=1,base_estimator=OF_base,random_state=55)
#pipeM = Pipeline([('Scale',StandardScaler()),
# ('Cull1',SelectFromModel(RandomForestClassifier(random_state=1),threshold='median')),
# ('Cull2',SelectFromModel(RandomForestClassifier(random_state=2),threshold='median')),
# ('Cull3',SelectFromModel(RandomForestClassifier(random_state=3),threshold='median')),
# ('Cull4',SelectFromModel(RandomForestClassifier(random_state=4),threshold='median')),
# ('Boost',madelon_booster)])
pipeA = Pipeline([('Scale',StandardScaler()),
('Boost',adult_booster)])
#
#madelon_clf = basicResults(pipeM,madelon_trgX,madelon_trgY,madelon_tstX,madelon_tstY,paramsM,'Boost','madelon')
adult_clf = basicResults(pipeA,adult_trgX,adult_trgY,adult_tstX,adult_tstY,paramsA,'Boost','adult')
#
#
#madelon_final_params = {'n_estimators': 20, 'learning_rate': 0.02}
#adult_final_params = {'n_estimators': 10, 'learning_rate': 1}
#OF_params = {'learning_rate':1}
#madelon_final_params = madelon_clf.best_params_
adult_final_params = adult_clf.best_params_
OF_params = {'Boost__base_estimator__alpha':-1, 'Boost__n_estimators':50}
##
#pipeM.set_params(**madelon_final_params)
pipeA.set_params(**adult_final_params)
#makeTimingCurve(madelonX,madelonY,pipeM,'Boost','madelon')
threshold='median')),
('Cull4',
SelectFromModel(RandomForestClassifier(random_state=4),
threshold='median')),
('DT', dtclf_pruned(random_state=55))])
pipeS = Pipeline([('Scale', StandardScaler()),
('DT', dtclf_pruned(random_state=55))])
params = {
'DT__criterion': ['gini', 'entropy'],
'DT__alpha': alphas,
'DT__class_weight': ['balanced']
}
spam_clf_fs = basicResults(pipeS_fs, spam_trgX, spam_trgY, spam_tstX,
spam_tstY, params, 'DT', 'spam_fs')
spam_clf = basicResults(pipeS, spam_trgX, spam_trgY, spam_tstX, spam_tstY,
params, 'DT', 'spam')
#madelon_final_params = {'DT__alpha': -0.00031622776601683794, 'DT__class_weight': 'balanced', 'DT__criterion': 'entropy'}
#adult_final_params = {'class_weight': 'balanced', 'alpha': 0.0031622776601683794, 'criterion': 'entropy'}
spam_fs_final_params = spam_clf_fs.best_params_
spam_final_params = spam_clf.best_params_
pipeS_fs.set_params(**spam_fs_final_params)
makeTimingCurve(spamX, spamY, pipeS_fs, 'DT', 'spam_fs')
pipeS.set_params(**spam_final_params)
makeTimingCurve(spamX, spamY, pipeS, 'DT', 'spam')
DTpruningVSnodes(pipeS_fs, alphas, spam_trgX, spam_trgY, 'spam_fs')
DTpruningVSnodes(pipeS, alphas, spam_trgX, spam_trgY, 'spam')
cancer_booster = AdaBoostClassifier(algorithm='SAMME',learning_rate=1,base_estimator=cancer_base,random_state=55)
adult_booster = AdaBoostClassifier(algorithm='SAMME',learning_rate=1,base_estimator=adult_base,random_state=55)
OF_booster = AdaBoostClassifier(algorithm='SAMME',learning_rate=1,base_estimator=OF_base,random_state=55)
pipeM = Pipeline([('Scale',StandardScaler()),
('Cull1',SelectFromModel(RandomForestClassifier(random_state=1),threshold='median')),
('Cull2',SelectFromModel(RandomForestClassifier(random_state=2),threshold='median')),
('Cull3',SelectFromModel(RandomForestClassifier(random_state=3),threshold='median')),
('Cull4',SelectFromModel(RandomForestClassifier(random_state=4),threshold='median')),
('Boost',cancer_booster)])
pipeA = Pipeline([('Scale',StandardScaler()),
('Boost',adult_booster)])
#
cancer_clf = basicResults(pipeM,cancer_trgX,cancer_trgY,cancer_tstX,cancer_tstY,paramsM,'Boost','cancer')
adult_clf = basicResults(pipeA,adult_trgX,adult_trgY,adult_tstX,adult_tstY,paramsA,'Boost','adult')
#
#madelon_final_params = {'n_estimators': 20, 'learning_rate': 0.02}
#adult_final_params = {'n_estimators': 10, 'learning_rate': 1}
#OF_params = {'learning_rate':1}
cancer_final_params = cancer_clf.best_params_
adult_final_params = adult_clf.best_params_
OF_params = {'Boost__base_estimator__alpha':-1, 'Boost__n_estimators':50}
##
pipeM.set_params(**cancer_final_params)
pipeA.set_params(**adult_final_params)
makeTimingCurve(cancerX,cancerY,pipeM,'Boost','cancer')
paramsA = {
'Boost__n_estimators': [1, 2, 5, 10, 20, 30, 45, 60, 80, 100],
'Boost__base_estimator__alpha': alphas
}
ab_booster = AdaBoostClassifier(algorithm='SAMME',
learning_rate=1,
base_estimator=ab_base,
random_state=55)
OF_booster = AdaBoostClassifier(algorithm='SAMME',
learning_rate=1,
base_estimator=OF_base,
random_state=55)
pipeA = Pipeline([('Scale', StandardScaler()), ('Boost', ab_booster)])
ab_clf = basicResults(pipeA, ab_trgX, ab_trgY, ab_tstX, ab_tstY, paramsA,
'Boost', 'ab')
ab_final_params = ab_clf.best_params_
OF_params = {'Boost__base_estimator__alpha': -1, 'Boost__n_estimators': 50}
pipeA.set_params(**ab_final_params)
makeTimingCurve(abX, abY, pipeA, 'Boost', 'ab')
pipeA.set_params(**ab_final_params)
iterationLC(pipeA, ab_trgX, ab_trgY, ab_tstX, ab_tstY,
{'Boost__n_estimators': [1, 2, 5, 10, 20, 30, 40, 50]}, 'Boost',
'ab')
#pipeM = Pipeline([('Scale',StandardScaler()),
# ('Cull1',SelectFromModel(RandomForestClassifier(random_state=1),threshold='median')),
# ('Cull2',SelectFromModel(RandomForestClassifier(random_state=2),threshold='median')),
# ('Cull3',SelectFromModel(RandomForestClassifier(random_state=3),threshold='median')),
# ('Cull4',SelectFromModel(RandomForestClassifier(random_state=4),threshold='median')),
# ('Boost',madelon_booster)])
# Build pipeline for feature scaling and learner
pipeA = Pipeline([('Scale', StandardScaler()), ('Boost', adult_booster)])
pipeM = Pipeline([('Scale', StandardScaler()), ('Boost', mushrooms_booster)])
pipeR = Pipeline([('Scale', StandardScaler()), ('Boost', redwine_booster)])
# Perform grid search cross validation over the hyperparameter grid
#madelon_clf = basicResults(pipeM,madelon_trgX,madelon_trgY,madelon_tstX,madelon_tstY,paramsM,'Boost','madelon')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
paramsA, 'Boost', 'adult')
mushrooms_clf = basicResults(pipeM, mushrooms_trgX, mushrooms_trgY,
mushrooms_tstX, mushrooms_tstY, paramsM, 'Boost',
'mushrooms')
redwine_clf = basicResults(pipeR, redwine_trgX, redwine_trgY, redwine_tstX,
redwine_tstY, paramsR, 'Boost', 'redwine')
#
#madelon_final_params = {'n_estimators': 20, 'learning_rate': 0.02}
#adult_final_params = {'n_estimators': 10, 'learning_rate': 1}
#OF_params = {'learning_rate':1}
# Save hyperparameters that grid search cross validation has identified as optimal
#madelon_final_params = madelon_clf.best_params_
adult_final_params = adult_clf.best_params_
mushrooms_final_params = mushrooms_clf.best_params_
('SVM', primalSVM_RBF())])
pipeA = Pipeline([('Scale', StandardScaler()), ('SVM', primalSVM_RBF())])
params_adult = {
'SVM__alpha': alphas,
'SVM__n_iter': [int((1e6 / N_adult) / .8) + 1],
'SVM__gamma_frac': gamma_fracsA
}
params_madelon = {
'SVM__alpha': alphas,
'SVM__n_iter': [int((1e6 / N_madelon) / .8) + 1],
'SVM__gamma_frac': gamma_fracsM
}
#
madelon_clf = basicResults(pipeM, madelon_trgX, madelon_trgY, madelon_tstX,
madelon_tstY, params_madelon, 'SVM_RBF', 'madelon')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params_adult, 'SVM_RBF', 'adult')
madelon_final_params = madelon_clf.best_params_
madelon_OF_params = madelon_final_params.copy()
madelon_OF_params['SVM__alpha'] = 1e-16
adult_final_params = adult_clf.best_params_
adult_OF_params = adult_final_params.copy()
adult_OF_params['SVM__alpha'] = 1e-16
pipeM.set_params(**madelon_final_params)
makeTimingCurve(madelonX, madelonY, pipeM, 'SVM_RBF', 'madelon')
pipeA.set_params(**adult_final_params)
makeTimingCurve(adultX, adultY, pipeM, 'SVM_RBF', 'adult')
alphasM = [10**-x for x in np.arange(-1, 9.01, 1 / 2)]
d = madelonX.shape[1]
# d = d//(2**4)
hiddens_madelon = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
params_adult = {
'MLP__activation': ['relu', 'logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_adult
}
params_madelon = {
'MLP__activation': ['relu', 'logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_madelon
}
#
madelon_clf = basicResults(pipeM, madelon_trgX, madelon_trgY, madelon_tstX,
madelon_tstY, params_madelon, 'ANN', 'cancer')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params_adult, 'ANN', 'adult')
#madelon_final_params = {'MLP__hidden_layer_sizes': (500,), 'MLP__activation': 'logistic', 'MLP__alpha': 10.0}
#adult_final_params ={'MLP__hidden_layer_sizes': (28, 28, 28), 'MLP__activation': 'logistic', 'MLP__alpha': 0.0031622776601683794}
madelon_final_params = madelon_clf.best_params_
adult_final_params = adult_clf.best_params_
adult_OF_params = adult_final_params.copy()
adult_OF_params['MLP__alpha'] = 0
madelon_OF_params = madelon_final_params.copy()
madelon_OF_params['MLP__alpha'] = 0
#raise
adultY = adult['income'].copy().values
adult_trgX, adult_tstX, adult_trgY, adult_tstY = ms.train_test_split(adultX, adultY, test_size=0.3, random_state=0,stratify=adultY)
N_adult = adult_trgX.shape[0]
alphas = [10**-x for x in np.arange(1,9.01,1/2)]
#Linear SVM
pipeA = Pipeline([('Scale',StandardScaler()),
('SVM',SGDClassifier(loss='hinge',l1_ratio=0,penalty='l2',class_weight='balanced',random_state=55))])
params_adult = {'SVM__alpha':alphas,'SVM__n_iter':[int((1e6/N_adult)/.8)+1]}
adult_clf = basicResults(pipeA,adult_trgX,adult_trgY,adult_tstX,adult_tstY,params_adult,'SVM_Lin','adult')
adult_final_params =adult_clf.best_params_
#adult_OF_params ={'SVM__n_iter': 55, 'SVM__alpha': 1e-16}
#
#
adult_OF_params = adult_final_params.copy()
adult_OF_params['SVM__alpha'] = 1e-16
pipeA.set_params(**adult_final_params)
makeTimingCurve(adultX,adultY,pipeA,'SVM_Lin','adult')
pipeA.set_params(**adult_final_params)
iterationLC(pipeA,adult_trgX,adult_trgY,adult_tstX,adult_tstY,{'SVM__n_iter':np.arange(1,75,3)},'SVM_Lin','adult')
#
pipeA.set_params(**adult_OF_params)
from sklearn.feature_selection import SelectFromModel
ab = pd.read_hdf('datasets.hdf', 'ab')
abX = ab.drop('rings', 1).copy().values
abY = ab['rings'].copy().values
ab_trgX, ab_tstX, ab_trgY, ab_tstY = ms.train_test_split(abX,
abY,
test_size=0.3,
random_state=0,
stratify=abY)
d = abX.shape[1]
hiddens_ab = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
alphas = [10**-x for x in np.arange(1, 9.01, 1 / 2)]
pipeA = Pipeline([('Scale', StandardScaler()), ('KNN', knnC())])
params_ab = {
'KNN__metric': ['manhattan', 'euclidean', 'chebyshev'],
'KNN__n_neighbors': np.arange(1, 51, 3),
'KNN__weights': ['uniform', 'distance']
}
ab_clf = basicResults(pipeA, ab_trgX, ab_trgY, ab_tstX, ab_tstY, params_ab,
'KNN', 'ab')
ab_final_params = ab_clf.best_params_
pipeA.set_params(**ab_final_params)
makeTimingCurve(abX, abY, pipeA, 'KNN', 'ab')
MLPClassifier(max_iter=2000,
early_stopping=True,
random_state=55))])
d = spamX.shape[1]
hiddens_spam = [(h, ) * l for l in [1, 2, 3] for h in [d, int(d // 2), d * 2]]
alphas = [10**-x for x in np.arange(-1, 8.01, 1 / 2)]
params_spam = {
'MLP__activation': ['relu', 'logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_spam
}
#spam_clf = basicResults(pipeS,spam_trgX,spam_trgY,spam_tstX,spam_tstY,params_spam,'ANN','spam')
spam_clf_fs = basicResults(pipeS_fs, spam_trgX, spam_trgY, spam_tstX,
spam_tstY, params_spam, 'ANN', 'spam_fs')
#spam_final_params = spam_clf.best_params_
#spam_OF_params =spam_final_params.copy()
#spam_OF_params['MLP__alpha'] = 0
spam_fs_final_params = spam_clf_fs.best_params_
spam_fs_OF_params = spam_fs_final_params.copy()
spam_fs_OF_params['MLP__alpha'] = 0
#pipeS.set_params(**spam_final_params)
#pipeS.set_params(**{'MLP__early_stopping':False})
#makeTimingCurve(spamX,spamY,pipeS,'ANN','spam')
pipeS_fs.set_params(**spam_fs_final_params)
pipeS_fs.set_params(**{'MLP__early_stopping': False})
# ('Cull2',SelectFromModel(RandomForestClassifier(random_state=2),threshold='median')),
# ('Cull3',SelectFromModel(RandomForestClassifier(random_state=3),threshold='median')),
# ('Cull4',SelectFromModel(RandomForestClassifier(random_state=4),threshold='median')),
# ('MLP',MLPClassifier(max_iter=2000,early_stopping=True,random_state=55))])
d = spamX.shape[1]
hiddens_spam = [(h, ) * l for l in [3] for h in [d * 2]]
alphas = [10**-x for x in np.arange(-1, 8.01, 1 / 2)]
params_spam = {
'MLP__activation': ['relu'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_spam
}
spam_clf = basicResults(pipeS, spam_trgX, spam_trgY, spam_tstX, spam_tstY,
params_spam, 'ANN', 'spam')
#spam_clf_fs = basicResults(pipeS_fs,spam_trgX,spam_trgY,spam_tstX,spam_tstY,params_spam,'ANN','spam_fs')
spam_final_params = spam_clf.best_params_
spam_OF_params = spam_final_params.copy()
spam_OF_params['MLP__alpha'] = 0
#spam_fs_final_params = spam_clf_fs.best_params_
#spam_fs_OF_params =spam_fs_final_params.copy()
#spam_fs_OF_params['MLP__alpha'] = 0
pipeS.set_params(**spam_final_params)
pipeS.set_params(**{'MLP__early_stopping': False})
makeTimingCurve(spamX, spamY, pipeS, 'ANN', 'spam')
#pipeS_fs.set_params(**spam_fs_final_params)
pipeA = Pipeline([('Scale', StandardScaler()),
('SVM',
SGDClassifier(loss='hinge',
l1_ratio=0,
penalty='l2',
class_weight='balanced',
random_state=55))])
params_adult = {
'SVM__alpha': alphas,
'SVM__n_iter': [int((1e6 / N_adult) / .8) + 1]
}
# print("target",np.unique(adult_trgY))
# print("train",np.unique(adult_tstY))
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params_adult, 'SVM_Lin', 'adult')
adult_final_params = adult_clf.best_params_
#adult_OF_params ={'SVM__n_iter': 55, 'SVM__alpha': 1e-16}
#
#
adult_OF_params = adult_final_params.copy()
adult_OF_params['SVM__alpha'] = 1e-16
pipeA.set_params(**adult_final_params)
makeTimingCurve(adultX, adultY, pipeA, 'SVM_Lin', 'adult')
pipeA.set_params(**adult_final_params)
iterationLC(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
{'SVM__n_iter': np.arange(1, 75, 3)}, 'SVM_Lin', 'adult')
#
# ('Cull1',SelectFromModel(RandomForestClassifier(),threshold='median')),
# ('Cull2',SelectFromModel(RandomForestClassifier(),threshold='median')),
# ('Cull3',SelectFromModel(RandomForestClassifier(),threshold='median')),
# ('Cull4',SelectFromModel(RandomForestClassifier(),threshold='median')),
# ('KNN',knnC())])
pipeA = Pipeline([('Scale',StandardScaler()),
('KNN',knnC())])
#params_madelon= {'KNN__metric':['manhattan','euclidean','chebyshev'],'KNN__n_neighbors':np.arange(1,51,3),'KNN__weights':['uniform','distance']}
params_adult= {'KNN__metric':['manhattan','euclidean','chebyshev'],'KNN__n_neighbors':np.arange(1,51,3),'KNN__weights':['uniform','distance']}
#madelon_clf = basicResults(pipeM,madelon_trgX,madelon_trgY,madelon_tstX,madelon_tstY,params_madelon,'KNN','madelon')
adult_clf = basicResults(pipeA,adult_trgX,adult_trgY,adult_tstX,adult_tstY,params_adult,'KNN','adult')
#madelon_final_params={'KNN__n_neighbors': 43, 'KNN__weights': 'uniform', 'KNN__p': 1}
#adult_final_params={'KNN__n_neighbors': 142, 'KNN__p': 1, 'KNN__weights': 'uniform'}
#madelon_final_params=madelon_clf.best_params_
adult_final_params=adult_clf.best_params_
#pipeM.set_params(**madelon_final_params)
#makeTimingCurve(madelonX,madelonY,pipeM,'KNN','madelon')
pipeA.set_params(**adult_final_params)
makeTimingCurve(adultX,adultY,pipeA,'KNN','adult')
# ('Cull3',SelectFromModel(RandomForestClassifier(random_state=3),threshold='median')),
# ('Cull4',SelectFromModel(RandomForestClassifier(random_state=4),threshold='median')),
# ('DT',dtclf_pruned(random_state=55))])
#
pipeA = Pipeline([('Scale', StandardScaler()),
('DT', dtclf_pruned(random_state=55))])
params = {
'DT__criterion': ['gini', 'entropy'],
'DT__alpha': alphas,
'DT__class_weight': ['balanced']
}
#madelon_clf = basicResults(pipeM,madelon_trgX,madelon_trgY,madelon_tstX,madelon_tstY,params,'DT','madelon')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params, 'DT', 'adult')
#madelon_final_params = {'DT__alpha': -0.00031622776601683794, 'DT__class_weight': 'balanced', 'DT__criterion': 'entropy'}
#adult_final_params = {'class_weight': 'balanced', 'alpha': 0.0031622776601683794, 'criterion': 'entropy'}
#madelon_final_params = madelon_clf.best_params_
adult_final_params = adult_clf.best_params_
#pipeM.set_params(**madelon_final_params)
#makeTimingCurve(madelonX,madelonY,pipeM,'DT','madelon')
pipeA.set_params(**adult_final_params)
makeTimingCurve(adultX, adultY, pipeA, 'DT', 'adult')
#DTpruningVSnodes(pipeM,alphas,madelon_trgX,madelon_trgY,'madelon')
DTpruningVSnodes(pipeA, alphas, adult_trgX, adult_trgY, 'adult')
# SPAM
'SVM__kernel': ['linear', 'poly', 'rbf'],
'SVM__C': [.1, .5, 1],
'SVM__gamma': ['scale']
}
complexity_params = {
'name': 'SVM__C',
'display_name': 'Penalty',
'values': np.arange(0.001, 2.5, 0.1)
}
data_clf = basicResults(pipeM,
data_train_x,
data_train_y,
data_test_x,
data_test_y,
params,
'SVM',
dataset,
scorer='f1',
complexity_curve=True,
complexity_params=complexity_params,
clf_name='SVM')
data_final_params = data_clf.best_params_
pipeM.set_params(**data_final_params)
makeTimingCurve(data_x, data_y, pipeM, 'SVM', dataset)
iterationLC(pipeM,
data_train_x,
data_train_y,
data_test_x,
data_test_y, {'SVM__max_iter': range(1, 250, 10)},
pipeM = Pipeline([ #('Scale',StandardScaler()),
('MLP', MLPClassifier(max_iter=2000, early_stopping=False,
random_state=55))
])
d = data_x.shape[1]
hiddens_data = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
alphas = [10**-x for x in np.arange(-1, 3.01, 1)]
params = {
'MLP__activation': ['relu', 'logistic'],
'MLP__hidden_layer_sizes': hiddens_data,
'MLP__alpha': alphas
}
data_clf = basicResults(pipeM, data_train_x, data_train_y, data_test_x,
data_test_y, params, 'ANN', dataset)
data_final_params = data_clf.best_params_
pipeM.set_params(**data_final_params)
makeTimingCurve(data_x, data_y, pipeM, 'ANN', dataset)
iterationLC(pipeM,
data_train_x,
data_train_y,
data_test_x,
data_test_y, {'MLP__max_iter': [2**x for x in range(8)]},
'ANN',
dataset=dataset)
def main():
cars = pd.read_hdf('data/processed/datasets.hdf', 'cars')
carsX = cars.drop('Class', 1).copy().values
carsY = cars['Class'].copy().values
madelon = pd.read_hdf('data/processed/datasets.hdf', 'madelon')
madelonX = madelon.drop('Class', 1).copy().values
madelonY = madelon['Class'].copy().values
cars_trgX, cars_tstX, cars_trgY, cars_tstY = ms.train_test_split(
carsX, carsY, test_size=0.3, random_state=0, stratify=carsY)
madelon_trgX, madelon_tstX, madelon_trgY, madelon_tstY = ms.train_test_split(
madelonX, madelonY, test_size=0.3, random_state=0, stratify=madelonY)
pipeA = Pipeline([('Scale', StandardScaler()),
('MLP',
MLPClassifier(max_iter=2000,
early_stopping=True,
random_state=55))])
pipeM = Pipeline([('Scale', StandardScaler()),
('Cull1',
SelectFromModel(RandomForestClassifier(random_state=1),
threshold='median')),
('Cull2',
SelectFromModel(RandomForestClassifier(random_state=2),
threshold='median')),
('Cull3',
SelectFromModel(RandomForestClassifier(random_state=3),
threshold='median')),
('Cull4',
SelectFromModel(RandomForestClassifier(random_state=4),
threshold='median')),
('MLP',
MLPClassifier(max_iter=2000,
early_stopping=True,
random_state=55))])
d = carsX.shape[1]
hiddens_cars = [(h, ) * l for l in [1, 2, 3] for h in [d, d // 2, d * 2]]
alphas = [10**-x for x in np.arange(-1, 5.01, 1 / 2)]
alphasM = [10**-x for x in np.arange(-1, 9.01, 1 / 2)]
d = madelonX.shape[1]
d = d // (2**4)
hiddens_madelon = [(h, ) * l for l in [1, 2, 3]
for h in [d, d // 2, d * 2]]
params_cars = {
'MLP__activation': ['relu', 'logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_cars
}
params_madelon = {
'MLP__activation': ['relu', 'logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_madelon
}
#
madelon_clf = basicResults(pipeM, madelon_trgX, madelon_trgY, madelon_tstX,
madelon_tstY, params_madelon, 'ANN', 'madelon')
cars_clf = basicResults(pipeA, cars_trgX, cars_trgY, cars_tstX, cars_tstY,
params_cars, 'ANN', 'cars')
#madelon_final_params = {'MLP__hidden_layer_sizes': (500,), 'MLP__activation': 'logistic', 'MLP__alpha': 10.0}
#cars_final_params ={'MLP__hidden_layer_sizes': (28, 28, 28), 'MLP__activation': 'logistic', 'MLP__alpha': 0.0031622776601683794}
madelon_final_params = madelon_clf.best_params_
cars_final_params = cars_clf.best_params_
cars_OF_params = cars_final_params.copy()
cars_OF_params['MLP__alpha'] = 0
madelon_OF_params = madelon_final_params.copy()
madelon_OF_params['MLP__alpha'] = 0
#raise
#
pipeM.set_params(**madelon_final_params)
pipeM.set_params(**{'MLP__early_stopping': False})
makeTimingCurve(madelonX, madelonY, pipeM, 'ANN', 'madelon')
pipeA.set_params(**cars_final_params)
pipeA.set_params(**{'MLP__early_stopping': False})
makeTimingCurve(carsX, carsY, pipeA, 'ANN', 'cars')
pipeM.set_params(**madelon_final_params)
pipeM.set_params(**{'MLP__early_stopping': False})
iterationLC(
pipeM, madelon_trgX, madelon_trgY, madelon_tstX, madelon_tstY, {
'MLP__max_iter': [2**x for x in range(12)] +
[2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000]
}, 'ANN', 'madelon')
pipeA.set_params(**cars_final_params)
pipeA.set_params(**{'MLP__early_stopping': False})
iterationLC(
pipeA, cars_trgX, cars_trgY, cars_tstX, cars_tstY, {
'MLP__max_iter': [2**x for x in range(12)] +
[2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000]
}, 'ANN', 'cars')
pipeM.set_params(**madelon_OF_params)
pipeM.set_params(**{'MLP__early_stopping': False})
iterationLC(
pipeM, madelon_trgX, madelon_trgY, madelon_tstX, madelon_tstY, {
'MLP__max_iter': [2**x for x in range(12)] +
[2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000]
}, 'ANN_OF', 'madelon')
pipeA.set_params(**cars_OF_params)
pipeA.set_params(**{'MLP__early_stopping': False})
iterationLC(
pipeA, cars_trgX, cars_trgY, cars_tstX, cars_tstY, {
'MLP__max_iter': [2**x for x in range(12)] +
[2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000]
}, 'ANN_OF', 'cars')
def main():
adult = pd.read_csv('data/adult_parsed.csv')
# plt.figure(figsize=(15,12))
# cor_map = adult.corr()
# sns.heatmap(cor_map, annot=True, fmt='.3f', cmap='YlGnBu')
# plt.show()
adult['net_capital'] = adult['capital-gain']-adult['capital-loss']
adult = adult.drop(["fnlwgt","capital-gain","capital-loss","workclass"],axis=1)
adult['income']=adult['income'].map({'<=50K': 0, '>50K': 1})
adult['gender'] = adult['gender'].map({'Male': 0, 'Female': 1}).astype(int)
adult['race'] = adult['race'].map({'Black': 0, 'Asian-Pac-Islander': 1, 'Other': 2, 'White': 3,
'Amer-Indian-Eskimo': 4}).astype(int)
adult['marital-status'] = adult['marital-status'].map({'Never-married':0,'Widowed':1,'Divorced':2, 'Separated':3,
'Married-spouse-absent':4, 'Married-civ-spouse':5, 'Married-AF-spouse':6})
adult['education'] = adult['education'].map({'Preschool':0,'1st-4th':1,'5th-6th':2, '7th-8th':3,
'9th':4, '10th':5, '11th':6, '12th':7, 'Prof-school':8,
'HS-grad':9, 'Some-college':10, 'Assoc-voc':11, 'Assoc-acdm':12,
'Bachelors':13, 'Masters':14, 'Doctorate':15})
adult['occupation'] = adult['occupation'].map({'Priv-house-serv':0,'Protective-serv':1,'Handlers-cleaners':2, 'Machine-op-inspct':3,
'Adm-clerical':4, 'Farming-fishing':5, 'Transport-moving':6, 'Craft-repair':7, 'Other-service':8,
'Tech-support':9, 'Sales':10, 'Exec-managerial':11, 'Prof-specialty':12, 'Armed-Forces':13 })
adult['native-country'] = adult['native-country'].map({'?':-1,'Puerto-Rico':0,'Haiti':1,'Cuba':2, 'Iran':3,
'Honduras':4, 'Jamaica':5, 'Vietnam':6, 'Mexico':7, 'Dominican-Republic':8,
'Laos':9, 'Ecuador':10, 'El-Salvador':11, 'Cambodia':12, 'Columbia':13,
'Guatemala':14, 'South':15, 'India':16, 'Nicaragua':17, 'Yugoslavia':18,
'Philippines':19, 'Thailand':20, 'Trinadad&Tobago':21, 'Peru':22, 'Poland':23,
'China':24, 'Hungary':25, 'Greece':26, 'Taiwan':27, 'Italy':28, 'Portugal':29,
'France':30, 'Hong':31, 'England':32, 'Scotland':33, 'Ireland':34,
'Holand-Netherlands':35, 'Canada':36, 'Germany':37, 'Japan':38,
'Outlying-US(Guam-USVI-etc)':39, 'United-States':40
})
adult['relationship'] = adult['relationship'].map({'Unmarried':0,'Other-relative':1, 'Not-in-family':2,
'Wife':3, 'Husband':4,'Own-child':5})
adult = pd.get_dummies(adult)
adult_income_X = adult.drop('income',1).copy().values
adult_income_Y = adult['income'].copy().values
# wine_data = pd.read_csv('data/wine-red-white-merge.csv')
# wineX = wine_data.drop('quality',1).copy().values
# wineY = wine_data['quality'].copy().values
adult_income_trgX, adult_income_tstX, adult_income_trgY, adult_income_tstY = ms.train_test_split(adult_income_X, adult_income_Y, test_size=0.3, random_state=0,stratify=adult_income_Y)
# wine_trgX, wine_tstX, wine_trgY, wine_tstY = ms.train_test_split(wineX, wineY, test_size=0.3, random_state=0,stratify=wineY)
d = adult_income_X.shape[1]
hiddens_adult_income = [(h,)*l for l in [1,2,3] for h in [d,d//2,d*2]]
alphas = [10**-x for x in np.arange(1,9.01,1/2)]
# d = wineX.shape[1]
# hiddens_wine = [(h,)*l for l in [1,2,3] for h in [d,d//2,d*2]]
pipeM = Pipeline([('Scale',StandardScaler()),
('Cull1',SelectFromModel(RandomForestClassifier(),threshold='median')),
('Cull2',SelectFromModel(RandomForestClassifier(),threshold='median')),
('Cull3',SelectFromModel(RandomForestClassifier(),threshold='median')),
('Cull4',SelectFromModel(RandomForestClassifier(),threshold='median')),
('KNN',knnC())])
pipeA = Pipeline([('Scale',StandardScaler()),
('KNN',knnC())])
params_adult_income= {'KNN__metric':['manhattan','euclidean','chebyshev'],'KNN__n_neighbors':np.arange(1,51,3),'KNN__weights':['uniform','distance']}
# params_wine= {'KNN__metric':['manhattan','euclidean','chebyshev'],'KNN__n_neighbors':np.arange(1,51,3),'KNN__weights':['uniform','distance']}
adult_income_clf = basicResults(pipeA,adult_income_trgX,adult_income_trgY,adult_income_tstX,adult_income_tstY,params_adult_income,'KNN','adult_income')
# wine_clf = basicResults(pipeM,wine_trgX,wine_trgY,wine_tstX,wine_tstY,params_wine,'KNN','wine')
# wine_final_params={'KNN__n_neighbors': 43, 'KNN__weights': 'uniform', 'KNN__p': 1}
#adult_income_final_params={'KNN__n_neighbors': 142, 'KNN__p': 1, 'KNN__weights': 'uniform'}
# wine_final_params=wine_clf.best_params_
adult_income_final_params=adult_income_clf.best_params_
# pipeM.set_params(**wine_final_params)
# makeTimingCurve(wineX,wineY,pipeM,'KNN','wine')
pipeA.set_params(**adult_income_final_params)
makeTimingCurve(adult_income_X,adult_income_Y,pipeA,'KNN','adult_income')
early_stopping=True,
random_state=55))])
d = adultX.shape[1]
#hiddens_adult = [(h,)*l for l in [1,2,3] for h in [d/4,d/2,d,int(round(d*1.2,0))]]
hiddens_adult = [56, 56, 56]
#alphas = [10**-x for x in np.arange(-1, 5.01, 0.5)]
alphas = [0.01]
params_adult = {
'MLP__activation': ['logistic'],
'MLP__alpha': alphas,
'MLP__hidden_layer_sizes': hiddens_adult
}
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params_adult, 'ANN', 'adult')
#
adult_final_params = adult_clf.best_params_
adult_OF_params = adult_final_params.copy()
adult_OF_params['MLP__alpha'] = 0
#raise
# Make timing curve of final model
#pipeA.set_params(**adult_final_params)
#pipeA.set_params(**{'MLP__early_stopping':False})
#makeTimingCurve(adultX,adultY,pipeA,'ANN','adult')
# Find opt number of iterations; in range 1 to 3000
pipeA.set_params(**adult_final_params)
# ('Cull3',SelectFromModel(RandomForestClassifier(random_state=3),threshold='median')),
# ('Cull4',SelectFromModel(RandomForestClassifier(random_state=4),threshold='median')),
# ('DT',dtclf_pruned(random_state=55))])
#
pipeA = Pipeline([('Scale', StandardScaler()),
('DT', dtclf_pruned(random_state=55))])
params = {
'DT__criterion': ['gini', 'entropy'],
'DT__alpha': alphas,
'DT__class_weight': ['balanced']
}
#madelon_clf = basicResults(pipeM,madelon_trgX,madelon_trgY,madelon_tstX,madelon_tstY,params,'DT','madelon')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params, 'DT', 'adult')
#madelon_final_params = {'DT__alpha': -0.00031622776601683794, 'DT__class_weight': 'balanced', 'DT__criterion': 'entropy'}
#adult_final_params = {'class_weight': 'balanced', 'alpha': 0.0031622776601683794, 'criterion': 'entropy'}
#madelon_final_params = madelon_clf.best_params_
adult_final_params = adult_clf.best_params_
#pipeM.set_params(**madelon_final_params)
#makeTimingCurve(madelonX,madelonY,pipeM,'DT','madelon')
pipeA.set_params(**adult_final_params)
makeTimingCurve(adultX, adultY, pipeA, 'DT', 'adult')
#DTpruningVSnodes(pipeM,alphas,madelon_trgX,madelon_trgY,'madelon')
DTpruningVSnodes(pipeA, alphas, adult_trgX, adult_trgY, 'adult')
###################################################################################################
])
pipeA = Pipeline([('Scale', StandardScaler()), ('KNN', knnC())])
params_adult = {
'KNN__metric': ['manhattan', 'euclidean', 'chebyshev'],
'KNN__n_neighbors': np.arange(1, 51, 3),
'KNN__weights': ['uniform', 'distance']
}
params_cancer = {
'KNN__metric': ['manhattan', 'euclidean', 'chebyshev'],
'KNN__n_neighbors': np.arange(1, 51, 3),
'KNN__weights': ['uniform', 'distance']
}
cancer_clf = basicResults(pipeM, cancer_trgX, cancer_trgY, cancer_tstX,
cancer_tstY, params_cancer, 'KNN', 'cancer')
adult_clf = basicResults(pipeA, adult_trgX, adult_trgY, adult_tstX, adult_tstY,
params_adult, 'KNN', 'adult')
adult_final_params = {
'KNN__n_neighbors': 160,
'KNN__p': 1,
'KNN__weights': 'uniform'
}
adult_final_params = adult_clf.best_params_
cancer_final_params = {
'KNN__n_neighbors': 90,
'KNN__p': 1,
'KNN__weights': 'uniform'
}
cancer_final_params = cancer_clf.best_params_